BP920406
Clone id YMU001_000136_G02
Library
Length 527
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000136_G02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
ACATGCAGGCAAACTCCAAATTTGTGCAAACATTTGCAAATGCCTCCGAAGGGCTTGTAC
ATGAGTCTGCAAGCAACAAGTGACGGCACAGAGACAGAAACAAGTGGCAAAAAGTGACAG
CACAGAGACAGAAACGCTGAGTCCGCATTTGCCATTACCATTGAATACTCGCCAAGACTA
CCAAACAACATCCCATACAAGAAGCTTCTATACCATTTGACAGTCCCCCCTTTGCATTGG
ATGAAAACAAGCAAGAGCTTCAGTGGTCATGCGATTATCGCGGGCATCGCACATCTAGAG
AGGACTCTGGTATCATTCCTTTCCTAGTGTAATGTTACCAACAGGTATCCTTCTTTGGAT
TGTGTAATCTTACCAACATGCACTTGGTCACCATCCACCAGGTGTCGTGAATGACTGCAT
TGCATTTGGGTGATGACATAGCCCTTAAACACCCTCCCTCTTGGTGCATCCACTGAAAAC
AGTACAGCCTTTCAAACACCCTCCACTGAATAACAGTCCTTATCTTC
■■Homology search results ■■ -
sp_hit_id P31157
Definition sp|P31157|ISIA_SYNP2 Iron stress-induced chlorophyll-binding protein OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6)
Align length 25
Score (bit) 31.6
E-value 2.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920406|Adiantum capillus-veneris mRNA, clone:
YMU001_000136_G02.
(527 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P31157|ISIA_SYNP2 Iron stress-induced chlorophyll-binding pro... 32 2.4
sp|Q55274|ISIA_SYNY3 Iron stress-induced chlorophyll-binding pro... 31 4.1
sp|Q62ZD8|VGB_BACLD Virginiamycin B lyase OS=Bacillus lichenifor... 30 9.2
sp|Q6IEE6|T132E_MOUSE Transmembrane protein 132E OS=Mus musculus... 30 9.2
sp|Q6IEE7|T132E_HUMAN Transmembrane protein 132E OS=Homo sapiens... 30 9.2
sp|Q12B26|MNMC_POLSJ tRNA 5-methylaminomethyl-2-thiouridine bios... 30 9.2

>sp|P31157|ISIA_SYNP2 Iron stress-induced chlorophyll-binding
protein OS=Synechococcus sp. (strain ATCC 27264 / PCC
7002 / PR-6) GN=isiA PE=2 SV=1
Length = 342

Score = 31.6 bits (70), Expect = 2.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1

Query: 208 LYHLTVPPLHWMKTSKSFSGHAIIA 282
++H+ VPPL W K FSG AI++
Sbjct: 218 IWHILVPPLQWAKKVLLFSGEAILS 242


>sp|Q55274|ISIA_SYNY3 Iron stress-induced chlorophyll-binding
protein OS=Synechocystis sp. (strain PCC 6803) GN=isiA
PE=1 SV=2
Length = 342

Score = 30.8 bits (68), Expect = 4.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1

Query: 208 LYHLTVPPLHWMKTSKSFSGHAIIA 282
++H+ VPPL W K FSG AI++
Sbjct: 219 IWHILVPPLGWAKKVLLFSGEAILS 243


>sp|Q62ZD8|VGB_BACLD Virginiamycin B lyase OS=Bacillus licheniformis
(strain DSM 13 / ATCC 14580) GN=vgb PE=3 SV=1
Length = 295

Score = 29.6 bits (65), Expect = 9.2
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +3

Query: 168 LAKTTKQHPIQEASIPFDSPPFALDENKQELQWSCDYRGHRTSREDS 308
+ K T Q I E ++P + PF + + W D GH+ R S
Sbjct: 80 IGKITPQGKITEYALPPGAAPFGIAAGCDDAMWYTDMAGHQIGRLSS 126


>sp|Q6IEE6|T132E_MOUSE Transmembrane protein 132E OS=Mus musculus
GN=Tmem132e PE=2 SV=1
Length = 982

Score = 29.6 bits (65), Expect = 9.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3

Query: 186 QHPIQEASIPFDSPPFALDENKQELQWSCDYRGH 287
Q P++ + F+ F K+ + W DYRGH
Sbjct: 295 QGPLEILQLDFEMENFTSQSVKRRIMWHIDYRGH 328


>sp|Q6IEE7|T132E_HUMAN Transmembrane protein 132E OS=Homo sapiens
GN=TMEM132E PE=2 SV=1
Length = 984

Score = 29.6 bits (65), Expect = 9.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3

Query: 186 QHPIQEASIPFDSPPFALDENKQELQWSCDYRGH 287
Q P++ + F+ F K+ + W DYRGH
Sbjct: 295 QGPLEILQLDFEMENFTSQSVKRRIMWHIDYRGH 328


>sp|Q12B26|MNMC_POLSJ tRNA 5-methylaminomethyl-2-thiouridine
biosynthesis bifunctional protein mnmC OS=Polaromonas
sp. (strain JS666 / ATCC BAA-500) GN=mnmC PE=3 SV=1
Length = 637

Score = 29.6 bits (65), Expect = 9.2
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = +3

Query: 60 HESASNK*RHRDRNKWQKVTAQRQKR*VRICHYH*ILAKTTKQHPIQEASIPFDSPPFAL 239
H+ AS R + WQ + A V C +LA + EA++P SPP AL
Sbjct: 410 HDHASVGQLIRQPDSWQVLDANGH---VLACAELVVLAAGYASRALAEAAVPPTSPPLAL 466

Query: 240 DENKQELQWS 269
+ ++ W+
Sbjct: 467 QAIRGQVSWA 476


tr_hit_id Q0YEV0
Definition tr|Q0YEV0|Q0YEV0_9DELT Putative uncharacterized protein OS=Geobacter sp. FRC-32
Align length 52
Score (bit) 33.1
E-value 8.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920406|Adiantum capillus-veneris mRNA, clone:
YMU001_000136_G02.
(527 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q0YEV0|Q0YEV0_9DELT Putative uncharacterized protein OS=Geoba... 33 8.8

>tr|Q0YEV0|Q0YEV0_9DELT Putative uncharacterized protein
OS=Geobacter sp. FRC-32 GN=GeobDRAFT_0147 PE=3 SV=1
Length = 379

Score = 33.1 bits (74), Expect = 8.8
Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = +2

Query: 74 QQVTAQRQKQVAKSDSTETETLSP----HLPLPLNTRQDYQTTSHTRSFYTI 217
+Q T Q A T TE LS LP PL T ++ TTSH R Y I
Sbjct: 102 EQTTTIPADQAASKKETSTEHLSKPLLQELPPPLRTAGEFTTTSHERLNYRI 153