BP920407 |
Clone id |
YMU001_000136_G03 |
Library |
YMU01 |
Length |
558 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000136_G03. |
Accession |
BP920407 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL1355Contig1 |
Sequence |
GGGCTCTGCTTTTTATGGTCTGAAACCAATTGTGGAGTTTATGACTTTCAATTTTGCCAT GCAGGCAATTGATCACATTATCAACTCTGCTGCAAAGACGAACTATATGTCTGCGGGGCA AATCTCGGTCCCCATTGTATTTAGAGGCCCAAATGGAGCTGCTGCTGGTGTCGCTGCTCA GCATTCACAGTGCTTTGCTGCATGGTATGGTTCATGTCCAGGGCTCAAAGTTCTCACTCC TTACTCAGCAGAGGATGCACGCGGGTTGATGAAAGCAGCAATTCGGGATCCTGATCCAGT GGTTTTTCTAGAAAATGAGTTATTATATGGAGAATCATTCCCTGTGTCAGCTGAAGTTCT TGATCCAAGTTTTGTTCTCCCGATTGGAAAAGCTAAGGTTGAACGTGTGGGGTCTGATGT AACTGTGACAGCTTTTTCCAAAATGGTTGGGTATGCTCTAAAGGCTGCAGAGCTTTTGGA AAAGGATGGTATCAATGTTGAGGTTATAAACTTGCGGTCAATTAGGCCACTGGACAGAGA AACTATCAACCAATCTGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P52904 |
Definition |
sp|P52904|ODPB_PEA Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum |
Align length |
185 |
Score (bit) |
321.0 |
E-value |
1.0e-87 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920407|Adiantum capillus-veneris mRNA, clone: YMU001_000136_G03. (558 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P52904|ODPB_PEA Pyruvate dehydrogenase E1 component subunit b... 321 1e-87 sp|Q38799|ODPB_ARATH Pyruvate dehydrogenase E1 component subunit... 310 4e-84 sp|O44451|ODPB_CAEEL Pyruvate dehydrogenase E1 component subunit... 267 2e-71 sp|P11966|ODPB_BOVIN Pyruvate dehydrogenase E1 component subunit... 253 3e-67 sp|Q9D051|ODPB_MOUSE Pyruvate dehydrogenase E1 component subunit... 253 6e-67 sp|P32473|ODPB_YEAST Pyruvate dehydrogenase E1 component subunit... 252 8e-67 sp|P49432|ODPB_RAT Pyruvate dehydrogenase E1 component subunit b... 251 1e-66 sp|Q09171|ODPB_SCHPO Pyruvate dehydrogenase E1 component subunit... 248 1e-65 sp|Q5RE79|ODPB_PONAB Pyruvate dehydrogenase E1 component subunit... 248 2e-65 sp|P11177|ODPB_HUMAN Pyruvate dehydrogenase E1 component subunit... 248 2e-65 sp|Q86HX0|ODPB_DICDI Pyruvate dehydrogenase E1 component subunit... 244 2e-64 sp|Q9R9N4|ODPB_RHIME Pyruvate dehydrogenase E1 component subunit... 243 6e-64 sp|P26269|ODPB_ASCSU Pyruvate dehydrogenase E1 component subunit... 235 1e-61 sp|O66113|ODPB_ZYMMO Pyruvate dehydrogenase E1 component subunit... 231 1e-60 sp|Q1RJX3|OPDB_RICBR Pyruvate dehydrogenase E1 component subunit... 229 7e-60 sp|Q4UKQ7|OPDB_RICFE Pyruvate dehydrogenase E1 component subunit... 226 6e-59 sp|Q92IS2|ODPB_RICCN Pyruvate dehydrogenase E1 component subunit... 226 6e-59 sp|Q9ZDR3|ODPB_RICPR Pyruvate dehydrogenase E1 component subunit... 221 2e-57 sp|Q68XA8|OPDB_RICTY Pyruvate dehydrogenase E1 component subunit... 219 7e-57 sp|P37941|ODBB_BACSU 2-oxoisovalerate dehydrogenase subunit beta... 158 1e-38 sp|Q85FX1|ODPB_CYAME Pyruvate dehydrogenase E1 component subunit... 152 8e-37 sp|P35488|ODPB_ACHLA Pyruvate dehydrogenase E1 component subunit... 147 4e-35 sp|P27746|ACOB_RALEH Acetoin:2,6-dichlorophenolindophenol oxidor... 145 2e-34 sp|P51266|ODPB_PORPU Pyruvate dehydrogenase E1 component subunit... 143 5e-34 sp|Q6B8T1|ODPB_GRATL Pyruvate dehydrogenase E1 component subunit... 142 1e-33 sp|P21874|ODPB_BACST Pyruvate dehydrogenase E1 component subunit... 140 3e-33 sp|Q9TLS3|ODPB_CYACA Pyruvate dehydrogenase E1 component subunit... 140 5e-33 sp|Q1XDM1|ODPB_PORYE Pyruvate dehydrogenase E1 component subunit... 139 7e-33 sp|Q8MA03|ODPB_CHAGL Pyruvate dehydrogenase E1 component subunit... 137 3e-32 sp|O34591|ACOB_BACSU Acetoin:2,6-dichlorophenolindophenol oxidor... 137 4e-32
>sp|P52904|ODPB_PEA Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum PE=2 SV=1 Length = 359
Score = 321 bits (823), Expect = 1e-87 Identities = 158/185 (85%), Positives = 173/185 (93%) Frame = +2
Query: 2 GSAFYGLKPIVEFMTFNFAMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVAAQ 181 G+A+YGLKP+VEFMTFNF+MQAIDHIINSAAK+NYMSAGQISVPIVFRG NG AAGV AQ Sbjct: 91 GAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGLNGDAAGVGAQ 150
Query: 182 HSQCFAAWYGSCPGLKVLTPYSAEDARGLMKAAIRDPDPVVFLENELLYGESFPVSAEVL 361 HS C+A+WYGSCPGLKVL P+SAEDARGL+KAAIRDPDPVVFLENELLYGESFPVSAEVL Sbjct: 151 HSHCYASWYGSCPGLKVLVPHSAEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVL 210
Query: 362 DPSFVLPIGKAKVERVGSDVTVTAFSKMVGYALKAAELLEKDGINVEVINLRSIRPLDRE 541 D SF LPIGKAK+ER G DVT+TAFSKMVG+ALKAAE+LEK+GI+ EVINLRSIRPLDR Sbjct: 211 DSSFWLPIGKAKIEREGKDVTITAFSKMVGFALKAAEILEKEGISAEVINLRSIRPLDRP 270
Query: 542 TINQS 556 TIN S Sbjct: 271 TINAS 275
>sp|Q38799|ODPB_ARATH Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2 Length = 363
Score = 310 bits (793), Expect = 4e-84 Identities = 152/185 (82%), Positives = 167/185 (90%) Frame = +2
Query: 2 GSAFYGLKPIVEFMTFNFAMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVAAQ 181 G+A+ GLKP+VEFMTFNF+MQAIDHIINSAAK+NYMSAGQI+VPIVFRGPNGAAAGV AQ Sbjct: 101 GAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQ 160
Query: 182 HSQCFAAWYGSCPGLKVLTPYSAEDARGLMKAAIRDPDPVVFLENELLYGESFPVSAEVL 361 HSQC+AAWY S PGLKVL PYSAEDARGL+KAAIRDPDPVVFLENELLYGESFP+S E L Sbjct: 161 HSQCYAAWYASVPGLKVLAPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISEEAL 220
Query: 362 DPSFVLPIGKAKVERVGSDVTVTAFSKMVGYALKAAELLEKDGINVEVINLRSIRPLDRE 541 D SF LPIGKAK+ER G DVT+ FSKMVG+ALKAAE L ++GI+ EVINLRSIRPLDR Sbjct: 221 DSSFCLPIGKAKIEREGKDVTIVTFSKMVGFALKAAEKLAEEGISAEVINLRSIRPLDRA 280
Query: 542 TINQS 556 TIN S Sbjct: 281 TINAS 285
>sp|O44451|ODPB_CAEEL Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C04C3.3 PE=1 SV=2 Length = 352
Score = 267 bits (683), Expect = 2e-71 Identities = 131/185 (70%), Positives = 157/185 (84%) Frame = +2
Query: 2 GSAFYGLKPIVEFMTFNFAMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVAAQ 181 G+AF GL+PI EFMTFNF+MQAID IINSAAKT YMSAG++ VPIVFRGPNGAAAGVAAQ Sbjct: 90 GAAFAGLRPICEFMTFNFSMQAIDQIINSAAKTYYMSAGRVPVPIVFRGPNGAAAGVAAQ 149
Query: 182 HSQCFAAWYGSCPGLKVLTPYSAEDARGLMKAAIRDPDPVVFLENELLYGESFPVSAEVL 361 HSQ F+AWY CPGLKV+ PYSAEDA+GL+KAAIRD +PVVFLENE+LYG+SFPV EVL Sbjct: 150 HSQDFSAWYAHCPGLKVVCPYSAEDAKGLLKAAIRDDNPVVFLENEILYGQSFPVGDEVL 209
Query: 362 DPSFVLPIGKAKVERVGSDVTVTAFSKMVGYALKAAELLEKDGINVEVINLRSIRPLDRE 541 FV+PIGKAK+ER G VT+ ++S+ V ++L+AA+ LE G++ EVINLRS+RP D E Sbjct: 210 SDDFVVPIGKAKIERAGDHVTIVSYSRGVEFSLEAAKQLEAIGVSAEVINLRSLRPFDFE 269
Query: 542 TINQS 556 +I QS Sbjct: 270 SIRQS 274
>sp|P11966|ODPB_BOVIN Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Bos taurus GN=PDHB PE=1 SV=2 Length = 359
Score = 253 bits (647), Expect = 3e-67 Identities = 124/185 (67%), Positives = 152/185 (82%) Frame = +2
Query: 2 GSAFYGLKPIVEFMTFNFAMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVAAQ 181 G+A GL+PI EFMTFNF+MQAID +INSAAKT YMS G SVPIVFRGPNGA+AGVAAQ Sbjct: 98 GAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQSVPIVFRGPNGASAGVAAQ 157
Query: 182 HSQCFAAWYGSCPGLKVLTPYSAEDARGLMKAAIRDPDPVVFLENELLYGESFPVSAEVL 361 HSQCFAAWYG CPGLKV++P+S+EDA+GL+K+AIRD +PVV LENEL+YG F + +E Sbjct: 158 HSQCFAAWYGHCPGLKVVSPWSSEDAKGLIKSAIRDNNPVVVLENELMYGVPFELPSEAQ 217
Query: 362 DPSFVLPIGKAKVERVGSDVTVTAFSKMVGYALKAAELLEKDGINVEVINLRSIRPLDRE 541 F++PIGKAK+ER G+ VT+ A S+ VG+ L+AA +L K+GI EVINLR+IRP+D E Sbjct: 218 SKDFLIPIGKAKIERQGTHVTIVAHSRPVGHCLEAATVLSKEGIECEVINLRTIRPMDIE 277
Query: 542 TINQS 556 TI S Sbjct: 278 TIEGS 282
>sp|Q9D051|ODPB_MOUSE Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Mus musculus GN=Pdhb PE=1 SV=1 Length = 359
Score = 253 bits (645), Expect = 6e-67 Identities = 123/185 (66%), Positives = 152/185 (82%) Frame = +2
Query: 2 GSAFYGLKPIVEFMTFNFAMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVAAQ 181 G+A GL+PI EFMTFNF+MQAID +INSAAKT YMSAG VPIVFRGPNGA+AGVAAQ Sbjct: 98 GAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSAGLQPVPIVFRGPNGASAGVAAQ 157
Query: 182 HSQCFAAWYGSCPGLKVLTPYSAEDARGLMKAAIRDPDPVVFLENELLYGESFPVSAEVL 361 HSQCFAAWYG CPGLKV++P+++EDA+GL+K+AIRD +PVV LENEL+YG +F + AE Sbjct: 158 HSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVMLENELMYGVAFELPAEAQ 217
Query: 362 DPSFVLPIGKAKVERVGSDVTVTAFSKMVGYALKAAELLEKDGINVEVINLRSIRPLDRE 541 F++PIGKAK+ER G+ +TV A S+ VG+ L+AA +L K+GI EVINLR+IRP+D E Sbjct: 218 SKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAAAVLSKEGIECEVINLRTIRPMDIE 277
Query: 542 TINQS 556 I S Sbjct: 278 AIEAS 282
>sp|P32473|ODPB_YEAST Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Saccharomyces cerevisiae GN=PDB1 PE=1 SV=2 Length = 366
Score = 252 bits (644), Expect = 8e-67 Identities = 125/183 (68%), Positives = 151/183 (82%), Gaps = 1/183 (0%) Frame = +2
Query: 2 GSAFYGLKPIVEFMTFNFAMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVAAQ 181 G+A GLKPIVEFM+FNF+MQAIDH++NSAAKT+YMS G +VFRGPNGAA GV AQ Sbjct: 104 GAALKGLKPIVEFMSFNFSMQAIDHVVNSAAKTHYMSGGTQKCQMVFRGPNGAAVGVGAQ 163
Query: 182 HSQCFAAWYGSCPGLKVLTPYSAEDARGLMKAAIRDPDPVVFLENELLYGESFPVSAEVL 361 HSQ F+ WYGS PGLKVL PYSAEDARGL+KAAIRDP+PVVFLENELLYGESF +S E L Sbjct: 164 HSQDFSPWYGSIPGLKVLVPYSAEDARGLLKAAIRDPNPVVFLENELLYGESFEISEEAL 223
Query: 362 DPSFVLPIGKAKVERVGSDVTVTAFSKMVGYALKAAELLEKD-GINVEVINLRSIRPLDR 538 P F LP KAK+ER G+D+++ +++ V ++L+AAE+L+K G++ EVINLRSIRPLD Sbjct: 224 SPEFTLPY-KAKIEREGTDISIVTYTRNVQFSLEAAEILQKKYGVSAEVINLRSIRPLDT 282
Query: 539 ETI 547 E I Sbjct: 283 EAI 285
>sp|P49432|ODPB_RAT Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Rattus norvegicus GN=Pdhb PE=1 SV=2 Length = 359
Score = 251 bits (642), Expect = 1e-66 Identities = 122/185 (65%), Positives = 151/185 (81%) Frame = +2
Query: 2 GSAFYGLKPIVEFMTFNFAMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVAAQ 181 G+A GL+PI EFMTFNF+MQAID +INSAAKT YMSAG VPIVFRGPNGA+AGVAAQ Sbjct: 98 GAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSAGLQPVPIVFRGPNGASAGVAAQ 157
Query: 182 HSQCFAAWYGSCPGLKVLTPYSAEDARGLMKAAIRDPDPVVFLENELLYGESFPVSAEVL 361 HSQCFAAWYG CPGLKV++P+++EDA+GL+K+AIRD +PVV LENEL+YG +F + E Sbjct: 158 HSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDDNPVVMLENELMYGVAFELPTEAQ 217
Query: 362 DPSFVLPIGKAKVERVGSDVTVTAFSKMVGYALKAAELLEKDGINVEVINLRSIRPLDRE 541 F++PIGKAK+ER G+ +TV A S+ VG+ L+AA +L K+GI EVINLR+IRP+D E Sbjct: 218 SKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAAAVLSKEGIECEVINLRTIRPMDIE 277
Query: 542 TINQS 556 I S Sbjct: 278 AIEAS 282
>sp|Q09171|ODPB_SCHPO Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Schizosaccharomyces pombe GN=pdb1 PE=2 SV=1 Length = 366
Score = 248 bits (633), Expect = 1e-65 Identities = 128/186 (68%), Positives = 148/186 (79%), Gaps = 1/186 (0%) Frame = +2
Query: 2 GSAFYGLKPIVEFMTFNFAMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVAAQ 181 G+AF GL+PI EFMTFNF+MQAIDHI+NSAA+T YMS G + PIVFRGPNG AA VAAQ Sbjct: 103 GAAFAGLRPICEFMTFNFSMQAIDHIVNSAARTLYMSGGIQACPIVFRGPNGPAAAVAAQ 162
Query: 182 HSQCFAAWYGSCPGLKVLTPYSAEDARGLMKAAIRDPDPVVFLENELLYGESFPVSAEVL 361 HSQ FA WYGS PGLKV++PYSAEDARGL+KAAIRDP+PVV LENE+LYG++FP+S E L Sbjct: 163 HSQHFAPWYGSIPGLKVVSPYSAEDARGLLKAAIRDPNPVVVLENEILYGKTFPISKEAL 222
Query: 362 DPSFVLPIGKAKVERVGSDVTVTAFSKMVGYALKAAELLEKD-GINVEVINLRSIRPLDR 538 FVLP G AKVER G D+T+ S V AL+AA+ L+ D G+ EVINLRSIRPLD Sbjct: 223 SEDFVLPFGLAKVERPGKDITIVGESISVVTALEAADKLKADYGVEAEVINLRSIRPLDI 282
Query: 539 ETINQS 556 TI S Sbjct: 283 NTIAAS 288
>sp|Q5RE79|ODPB_PONAB Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pongo abelii GN=PDHB PE=2 SV=1 Length = 359
Score = 248 bits (632), Expect = 2e-65 Identities = 119/185 (64%), Positives = 149/185 (80%) Frame = +2
Query: 2 GSAFYGLKPIVEFMTFNFAMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVAAQ 181 G+A GL+PI EFMTFNF+MQAID +INSAAKT YMS G VPIVFRGPNGA+AGVAAQ Sbjct: 98 GAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQ 157
Query: 182 HSQCFAAWYGSCPGLKVLTPYSAEDARGLMKAAIRDPDPVVFLENELLYGESFPVSAEVL 361 HSQCFAAWYG CPGLKV++P+++EDA+GL+K+AIRD +PVV LENEL+YG F E Sbjct: 158 HSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQ 217
Query: 362 DPSFVLPIGKAKVERVGSDVTVTAFSKMVGYALKAAELLEKDGINVEVINLRSIRPLDRE 541 F++PIGKAK+ER G+ +TV + S+ VG+ L+AA +L K+G+ EVIN+R+IRP+D E Sbjct: 218 SKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDME 277
Query: 542 TINQS 556 TI S Sbjct: 278 TIEAS 282
>sp|P11177|ODPB_HUMAN Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Homo sapiens GN=PDHB PE=1 SV=3 Length = 359
Score = 248 bits (632), Expect = 2e-65 Identities = 119/185 (64%), Positives = 149/185 (80%) Frame = +2
Query: 2 GSAFYGLKPIVEFMTFNFAMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVAAQ 181 G+A GL+PI EFMTFNF+MQAID +INSAAKT YMS G VPIVFRGPNGA+AGVAAQ Sbjct: 98 GAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQ 157
Query: 182 HSQCFAAWYGSCPGLKVLTPYSAEDARGLMKAAIRDPDPVVFLENELLYGESFPVSAEVL 361 HSQCFAAWYG CPGLKV++P+++EDA+GL+K+AIRD +PVV LENEL+YG F E Sbjct: 158 HSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQ 217
Query: 362 DPSFVLPIGKAKVERVGSDVTVTAFSKMVGYALKAAELLEKDGINVEVINLRSIRPLDRE 541 F++PIGKAK+ER G+ +TV + S+ VG+ L+AA +L K+G+ EVIN+R+IRP+D E Sbjct: 218 SKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDME 277
Query: 542 TINQS 556 TI S Sbjct: 278 TIEAS 282
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8LPU2 |
Definition |
tr|B8LPU2|B8LPU2_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
185 |
Score (bit) |
330.0 |
E-value |
4.0e-89 |
Report |
|