BP920414 [AcEST]

BP920414
Clone id	YMU001_000136_G10
Library	YMU01
Length	484
Definition	Adiantum capillus-veneris mRNA. clone: YMU001_000136_G10.
Accession	BP920414
Tissue type	prothallium
Developmental stage	-
Contig ID	CL1Contig3
Sequence	GGGTATAGTTTAGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGATAGTTGAGGGAT CGTATCTCGGCTAAATTAACTGAAAGAAAAAACTTTATCTTCGCAGAAAATATGTGTTTT CTTATTATTTCTCCAAAATTAGAGGTAGATTAATCAATCTCGTCACTCATTCATTTCAAG AACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTATCCCAAGAAATACTTGGTTTA ATTTCTACTTCCGGGGAGATAAATAAAGAAAAAAATCTATGGGTAGACGTCTAAGATAGC TGACTCATCGTCACTAAACCTCAGAGAATGAATCTGGGAAAGAAAGTTGGAATAAATAAA TCCGGGTTTGTCAAGATTATTGAACATCTATTTGGTTGAACGGGATCCCTCGTTTCAACA ACTCGGTGAGATATATTTCCCTAAGGGTTTTTTCCTGAAAAAAAAAAAAAAAAAAAAAAA AAAA
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	O43114
Definition	sp\|O43114\|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe
Align length	57
Score (bit)	30.0
E-value	5.0
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BP920414\|Adiantum capillus-veneris mRNA, clone: YMU001_000136_G10. (457 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|O43114\|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch... 30 5.0 sp\|O51578\|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrel... 29 8.6 >sp\|O43114\|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe GN=orc5 PE=1 SV=2 Length = 455 Score = 30.0 bits (66), Expect = 5.0 Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 8/57 (14%) Frame = +1 Query: 238 LISTSGEINKEKNLWVDVDSLIVTKPQRM--------NLGKKVGINKSGFVKIIE 384 L+ T+ +++KE+N+W+++ D + R+ ++ K GIN SGF+ ++E Sbjct: 51 LLRTAFDLSKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLLE 107 >sp\|O51578\|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia burgdorferi GN=recB PE=3 SV=1 Length = 1169 Score = 29.3 bits (64), Expect = 8.6 Identities = 18/55 (32%), Positives = 30/55 (54%) Frame = +1 Query: 208 IVLVSQEILGLISTSGEINKEKNLWVDVDSLIVTKPQRMNLGKKVGINKSGFV 372 IVL+ + + LI+ +I EKNLW+ + + +TK Q++ K IN G + Sbjct: 624 IVLLEKNEITLINAINKITFEKNLWIKIAN----ITKDQKIIEWAKNKINYKGLL 674
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	A6D2J9
Definition	tr\|A6D2J9\|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1
Align length	50
Score (bit)	35.0
E-value	1.9
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BP920414\|Adiantum capillus-veneris mRNA, clone: YMU001_000136_G10. (457 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|A6D2J9\|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibri... 35 1.9 >tr\|A6D2J9\|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1 GN=VSAK1_01567 PE=4 SV=1 Length = 319 Score = 35.0 bits (79), Expect = 1.9 Identities = 16/50 (32%), Positives = 31/50 (62%) Frame = -3 Query: 179 LKMSDEIDSTSNFGEIIRKHIFSAKIKFFLSVNLAEIRSLNYQNHCET 30 LK +++E+D ST + ++++F A +F+L VNL + R++ Q C + Sbjct: 234 LKQIANELDISTKSINLFFKEYLFIAPKRFYLLVNLFKFRNILIQGKCSS 283