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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920415
Clone id YMU001_000136_G11
Library
Length 599
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000136_G11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATGTACAAGAGCTCAAAAAAAAATAAAAAACTTGCCTACCTTCATTAGGTGTTGTCCTAT
GTAAAAAGAGGCCATTATCGCCCAAGCAATTGTCATCCATTCATCAACAATTTCTAATGC
ATTGTCGTAGATGTAGACAATACCCCAGGGTCAATTGTGGGCGTGATCACGTTTCAGTGA
CTCATTAGAGAAGATGTAACCATAAAAACCAAGAGTAATGGGTAAATCCTGTGAGCCAAG
GTTACAAACCAGCAGTAATCATCTACGAGATTGAAGTTCATGTTACCGAGTCATCCACAC
AACAGAATTATGTCAATGTTTGCCGAAACGGTTGTATCAAAGGGGGCAACATCCACAAAG
CCACAACAGCATGGCTGGAAAAAAAATTGCACATTGTAATATATTTGCAAACCAATGCAC
ATAGTAAGATATTCGATGGGCTTGGTCTTCATGTTCATAGCTTTGGCATGACTCGATCAC
AACTATAGAGCGGGCTCTTTGATACACCATGACAATAAAAGGGGGCTCTCCACCAGCACA
GTATAAATGACTTAATTTCCTGTAATAAGGGTTTCTACGAAATTTCAATAGAATCACCT
■■Homology search results ■■ -
sp_hit_id A8FMH0
Definition sp|A8FMH0|PRMA_CAMJ8 Ribosomal protein L11 methyltransferase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828)
Align length 55
Score (bit) 32.3
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920415|Adiantum capillus-veneris mRNA, clone:
YMU001_000136_G11.
         (599 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A8FMH0|PRMA_CAMJ8 Ribosomal protein L11 methyltransferase OS=...    32   1.9  
sp|P19397|CD53_HUMAN Leukocyte surface antigen CD53 OS=Homo sapi...    32   3.2  
sp|Q5HTY7|PRMA_CAMJR Ribosomal protein L11 methyltransferase OS=...    30   7.1  
sp|A1W0A4|PRMA_CAMJJ Ribosomal protein L11 methyltransferase OS=...    30   7.1  
sp|Q9PNH7|PRMA_CAMJE Ribosomal protein L11 methyltransferase OS=...    30   7.1  
sp|O74524|PROD_SCHPO Probable proline dehydrogenase, mitochondri...    30   9.3  

>sp|A8FMH0|PRMA_CAMJ8 Ribosomal protein L11 methyltransferase
           OS=Campylobacter jejuni subsp. jejuni serotype O:6
           (strain 81116 / NCTC 11828) GN=prmA PE=3 SV=1
          Length = 281

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = +3

Query: 204 KNQE*WVNPVSQGYKPAVIIYEIEVHVTESSTQQNYVNVCRNGCIKGGNIHKATT 368
           K  + W+    +G KP +++  + +H T    ++N++N+  N  +  G+ H  +T
Sbjct: 80  KENKDWIQEYKKGIKP-ILVDNVYIHTTWQEEKKNFINIKINPALAFGSGHHEST 133


>sp|P19397|CD53_HUMAN Leukocyte surface antigen CD53 OS=Homo sapiens
           GN=CD53 PE=2 SV=1
          Length = 219

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 7/39 (17%)
 Frame = -3

Query: 402 ILQCAIFFPAMLLWLCGCCPL*Y-------NRFGKH*HN 307
           +L+  +FF  +L W+CGCC L +       N FG   HN
Sbjct: 8   LLKYVLFFFNLLFWICGCCILGFGIYLLIHNNFGVLFHN 46


>sp|Q5HTY7|PRMA_CAMJR Ribosomal protein L11 methyltransferase
           OS=Campylobacter jejuni (strain RM1221) GN=prmA PE=3
           SV=1
          Length = 281

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +3

Query: 204 KNQE*WVNPVSQGYKPAVIIYEIEVHVTESSTQQNYVNVCRNGCIKGGNIHKATT 368
           K  + W+    +G KP +++  + +H T    ++N +N+  N  +  G+ H  +T
Sbjct: 80  KENKDWIQEYKKGIKP-ILVDNVYIHTTWQEEKKNCINIKINPALAFGSGHHEST 133


>sp|A1W0A4|PRMA_CAMJJ Ribosomal protein L11 methyltransferase
           OS=Campylobacter jejuni subsp. jejuni serotype O:23/36
           (strain 81-176) GN=prmA PE=3 SV=1
          Length = 281

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +3

Query: 204 KNQE*WVNPVSQGYKPAVIIYEIEVHVTESSTQQNYVNVCRNGCIKGGNIHKATT 368
           K  + W+    +G KP +++  + +H T    ++N +N+  N  +  G+ H  +T
Sbjct: 80  KENKDWIQEYKKGIKP-ILVDNVYIHTTWQEEKKNCINIKINPALAFGSGHHEST 133


>sp|Q9PNH7|PRMA_CAMJE Ribosomal protein L11 methyltransferase
           OS=Campylobacter jejuni GN=prmA PE=3 SV=1
          Length = 281

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +3

Query: 204 KNQE*WVNPVSQGYKPAVIIYEIEVHVTESSTQQNYVNVCRNGCIKGGNIHKATT 368
           K  + W+    +G KP +++  + +H T    ++N +N+  N  +  G+ H  +T
Sbjct: 80  KENKDWIQEYKKGIKP-ILVDNVYIHTTWQEEKKNCINIKINPALAFGSGHHEST 133


>sp|O74524|PROD_SCHPO Probable proline dehydrogenase, mitochondrial
           OS=Schizosaccharomyces pombe GN=SPCC70.03c PE=2 SV=1
          Length = 492

 Score = 30.0 bits (66), Expect = 9.3
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = -3

Query: 597 VILLKFRRNPYYRKLSHLYCAGGEPPFIVMVYQRARSIVVIESCQSYEHE 448
           V  L F  NP+ R   + +  GGE P  VM          I SC +Y  E
Sbjct: 87  VFHLSFLYNPFCRYTFYKHFCGGETPQAVMATMDTLQAAGITSCLNYSRE 136
tr_hit_id Q4HGR0
Definition tr|Q4HGR0|Q4HGR0_CAMCO Ribosomal protein L11 methyltransferase VC0293 OS=Campylobacter coli RM2228
Align length 55
Score (bit) 34.7
E-value 4.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920415|Adiantum capillus-veneris mRNA, clone:
YMU001_000136_G11.
         (599 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4HGR0|Q4HGR0_CAMCO Ribosomal protein L11 methyltransferase V...    35   4.3  
tr|Q94R36|Q94R36_9SALA NADH-ubiquinone oxidoreductase chain 4 OS...    34   7.4  
tr|Q9V0D4|Q9V0D4_PYRAB Putative uncharacterized protein OS=Pyroc...    34   7.4  

>tr|Q4HGR0|Q4HGR0_CAMCO Ribosomal protein L11 methyltransferase
           VC0293 OS=Campylobacter coli RM2228 GN=prmA PE=4 SV=1
          Length = 282

 Score = 34.7 bits (78), Expect = 4.3
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +3

Query: 204 KNQE*WVNPVSQGYKPAVIIYEIEVHVTESSTQQNYVNVCRNGCIKGGNIHKATT 368
           K  + WV    +G KP ++I  I +H T    ++NY+N+  N  +  G+ H  +T
Sbjct: 80  KENKDWVEEYKKGIKP-ILIDNIYIHTTWQEEKENYLNIKINPALAFGSGHHEST 133


>tr|Q94R36|Q94R36_9SALA NADH-ubiquinone oxidoreductase chain 4
           OS=Lyciasalamandra atifi GN=NADH4 PE=3 SV=1
          Length = 459

 Score = 33.9 bits (76), Expect = 7.4
 Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 3/141 (2%)
 Frame = -1

Query: 533 VESPLLLSWCIKEPAL*L*SSHAKAMNMKTKPIEYLTMCIGLQIYYNVQFFFQPCCCGFV 354
           + SPLL+  C   P + L S +   +N  T+   YLTM I LQ+   + F        ++
Sbjct: 61  ISSPLLVLTCWLLPLMTLASQNHLKLNPLTRQRTYLTMLIILQMSLILAFSSTELILFYI 120

Query: 353 DVAPFDTTVSANIDIILLCG*LGNMNFNL-VDDYCWFVTLAHRIYPLLLVFMVTSSLMSH 177
               F+ T+   I  +++    GN    L    Y  F TLA     L+ + ++  SL S 
Sbjct: 121 S---FEATL---IPTLIIITRWGNQTERLNAGTYFLFYTLAGSFPLLVALLVIKVSLGSL 174

Query: 176 *NVITPTIDPGVLS--TSTTM 120
             ++  T+ P +    TSTT+
Sbjct: 175 SIILINTLQPTLSQDYTSTTL 195


>tr|Q9V0D4|Q9V0D4_PYRAB Putative uncharacterized protein
           OS=Pyrococcus abyssi GN=PYRAB08560 PE=4 SV=1
          Length = 1144

 Score = 33.9 bits (76), Expect = 7.4
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +3

Query: 324 RNGCIKGGNIHKATTAWLEKKLHIVIYLQTNAHSKIFDGLGLHVHSFGMTRSQ 482
           R+  ++G N+ K   AW ++ L+I I     A+ K+  G+G+ V   G T S+
Sbjct: 63  RDSGLQGANLDKLYIAWDDEYLYIAIKTNNTANWKVAYGIGIDVGPGGFTGSE 115