BP920422 |
Clone id |
YMU001_000136_H06 |
Library |
YMU01 |
Length |
373 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000136_H06. |
Accession |
BP920422 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL1934Contig1 |
Sequence |
TTTCAGCCAGCTTGAAGTCTTGCCCTAGATCACAACACTCCTCTATGGCAAGCAATCTTT CCAAAGGCTTCATCTGATAGACTTTCCTTTAGAGGATAGAAAAGATAAGCATGTGCTTCC TTATCTGCTCTTCCAACTCTCCCCCGTAGCTGGTAAATCTGAGCCAATCCAAAAAGGTGG ATATCTTCAACAATAATCGTGTTAACGCGTCTTATGTCAAGACCACTTTCAATTATGTCT GTGCACAAAAGAAGTTGTGACTCGCCTTGATCAAAGCGATCCATGGTCTCTTCAAGTAGA GTTGCACTTTGTTTTCCATATGCAATGCCAATATCTATGCTTGGAAATAATCTTTGCAAA GCGGCCTTCTTGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q55750 |
Definition |
sp|Q55750|MFD_SYNY3 Transcription-repair-coupling factor OS=Synechocystis sp. (strain PCC 6803) |
Align length |
98 |
Score (bit) |
110.0 |
E-value |
3.0e-24 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920422|Adiantum capillus-veneris mRNA, clone: YMU001_000136_H06. (373 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q55750|MFD_SYNY3 Transcription-repair-coupling factor OS=Syne... 110 3e-24 sp|Q49V12|MFD_STAS1 Transcription-repair-coupling factor OS=Stap... 95 1e-20 sp|Q5HRQ2|MFD_STAEQ Transcription-repair-coupling factor OS=Stap... 93 2e-20 sp|O52236|MFD_MYXXA Transcription-repair-coupling factor OS=Myxo... 96 6e-20 sp|Q8CMT1|MFD_STAES Transcription-repair-coupling factor OS=Stap... 93 6e-20 sp|Q8NXZ6|MFD_STAAW Transcription-repair-coupling factor OS=Stap... 93 6e-20 sp|Q6GBY5|MFD_STAAS Transcription-repair-coupling factor OS=Stap... 93 6e-20 sp|Q6GJG8|MFD_STAAR Transcription-repair-coupling factor OS=Stap... 93 6e-20 sp|Q7A7B2|MFD_STAAN Transcription-repair-coupling factor OS=Stap... 93 6e-20 sp|Q99WA0|MFD_STAAM Transcription-repair-coupling factor OS=Stap... 93 6e-20 sp|Q5HIH2|MFD_STAAC Transcription-repair-coupling factor OS=Stap... 93 6e-20 sp|Q2YVY2|MFD_STAAB Transcription-repair-coupling factor OS=Stap... 93 6e-20 sp|Q2G0R8|MFD_STAA8 Transcription-repair-coupling factor OS=Stap... 93 6e-20 sp|Q2FJD8|MFD_STAA3 Transcription-repair-coupling factor OS=Stap... 93 6e-20 sp|Q4L3G0|MFD_STAHJ Transcription-repair-coupling factor OS=Stap... 91 1e-19 sp|P64326|MFD_MYCTU Transcription-repair-coupling factor OS=Myco... 94 2e-19 sp|P64327|MFD_MYCBO Transcription-repair-coupling factor OS=Myco... 94 2e-19 sp|O51568|MFD_BORBU Transcription-repair-coupling factor OS=Borr... 89 7e-19 sp|Q89AK2|MFD_BUCBP Transcription-repair-coupling factor OS=Buch... 91 2e-18 sp|P37474|MFD_BACSU Transcription-repair-coupling factor OS=Baci... 84 3e-17 sp|O26066|MFD_HELPY Transcription-repair-coupling factor OS=Heli... 86 4e-17 sp|Q9ZJ57|MFD_HELPJ Transcription-repair-coupling factor OS=Heli... 86 4e-17 sp|Q1RI82|MFD_RICBR Transcription-repair-coupling factor OS=Rick... 83 5e-16 sp|Q92H58|MFD_RICCN Transcription-repair-coupling factor OS=Rick... 82 6e-16 sp|P30958|MFD_ECOLI Transcription-repair-coupling factor OS=Esch... 82 8e-16 sp|P57381|MFD_BUCAI Transcription-repair-coupling factor OS=Buch... 80 4e-15 sp|Q9AKD5|MFD_RICTY Transcription-repair-coupling factor OS=Rick... 79 5e-15 sp|Q4UMJ0|MFD_RICFE Transcription-repair-coupling factor OS=Rick... 79 7e-15 sp|O05955|MFD_RICPR Transcription-repair-coupling factor OS=Rick... 78 1e-14 sp|P45128|MFD_HAEIN Transcription-repair-coupling factor OS=Haem... 77 3e-14
>sp|Q55750|MFD_SYNY3 Transcription-repair-coupling factor OS=Synechocystis sp. (strain PCC 6803) GN=mfd PE=3 SV=1 Length = 1199
Score = 110 bits (274), Expect = 3e-24 Identities = 54/98 (55%), Positives = 74/98 (75%) Frame = -3
Query: 359 LQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTIIVEDI 180 L+++ PS I I +G+ + LE TM F+ GE+ +L+CT IIE+GLDI RVNTIIVED Sbjct: 875 LRQMVPSARIAIGHGQMEESELESTMLAFNDGEADILVCTTIIEAGLDIPRVNTIIVEDA 934
Query: 179 HLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEA 66 FGLAQ+YQLRGRVGR+ +AHA+L YP ++ L+++A Sbjct: 935 QKFGLAQLYQLRGRVGRSGIQAHAWLLYPNQKQLTEKA 972
>sp|Q49V12|MFD_STAS1 Transcription-repair-coupling factor OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=mfd PE=3 SV=1 Length = 1170
Score = 95.1 bits (235), Expect(2) = 1e-20 Identities = 46/102 (45%), Positives = 68/102 (66%) Frame = -3
Query: 371 KKAALQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTII 192 K+ LQ L P +IG+A+G+ + LEETM F E +++ T IIE+G+D+ NT+I Sbjct: 845 KREQLQMLMPDANIGVAHGQMNERDLEETMLSFINHEYDIIVTTTIIETGVDVPNANTLI 904
Query: 191 VEDIHLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEA 66 +ED FGL+Q+YQLRGRVGR+ + +AY +P + LS+ A Sbjct: 905 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPTNKVLSETA 946
Score = 23.5 bits (49), Expect(2) = 1e-20 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -1
Query: 85 KVYQMKPLERLLAIEECCDLGQDFKLA 5 KV +RL AI+E +LG FK+A Sbjct: 940 KVLSETAEDRLQAIKEFTELGSGFKIA 966
>sp|Q5HRQ2|MFD_STAEQ Transcription-repair-coupling factor OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=mfd PE=3 SV=1 Length = 1169
Score = 93.2 bits (230), Expect(2) = 2e-20 Identities = 45/102 (44%), Positives = 68/102 (66%) Frame = -3
Query: 371 KKAALQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTII 192 K+ LQRL P +I +A+G+ + LEETM F E +L+ T IIE+G+D+ NT+I Sbjct: 844 KREQLQRLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLI 903
Query: 191 VEDIHLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEA 66 +E+ FGL+Q+YQLRGRVGR+ + +AY +P + L++ A Sbjct: 904 IEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETA 945
Score = 24.6 bits (52), Expect(2) = 2e-20 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = -1
Query: 85 KVYQMKPLERLLAIEECCDLGQDFKLA 5 KV ERL AI+E +LG FK+A Sbjct: 939 KVLNETAEERLQAIKEFTELGSGFKIA 965
>sp|O52236|MFD_MYXXA Transcription-repair-coupling factor OS=Myxococcus xanthus GN=mfd PE=3 SV=1 Length = 1201
Score = 95.9 bits (237), Expect = 6e-20 Identities = 47/98 (47%), Positives = 67/98 (68%) Frame = -3
Query: 359 LQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTIIVEDI 180 L+ L P + IG+A+G+ LE+ M F + + Q+LLCT IIESG+DI NT+IV Sbjct: 884 LRALVPQVSIGVAHGQMGEGQLEKVMLAFTEKKYQVLLCTSIIESGIDISSANTMIVNRA 943
Query: 179 HLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEA 66 FGLAQ+YQLRGRVGR+ + A+AYL P + +++ +A Sbjct: 944 DQFGLAQLYQLRGRVGRSKERAYAYLLVPSRRAVTKDA 981
>sp|Q8CMT1|MFD_STAES Transcription-repair-coupling factor OS=Staphylococcus epidermidis (strain ATCC 12228) GN=mfd PE=3 SV=1 Length = 1169
Score = 93.2 bits (230), Expect(2) = 6e-20 Identities = 45/102 (44%), Positives = 68/102 (66%) Frame = -3
Query: 371 KKAALQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTII 192 K+ LQRL P +I +A+G+ + LEETM F E +L+ T IIE+G+D+ NT+I Sbjct: 844 KREQLQRLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLI 903
Query: 191 VEDIHLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEA 66 +E+ FGL+Q+YQLRGRVGR+ + +AY +P + L++ A Sbjct: 904 IEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETA 945
Score = 23.1 bits (48), Expect(2) = 6e-20 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = -1
Query: 85 KVYQMKPLERLLAIEECCDLGQDFKLA 5 KV ERL I+E +LG FK+A Sbjct: 939 KVLNETAEERLQTIKEFTELGSGFKIA 965
>sp|Q8NXZ6|MFD_STAAW Transcription-repair-coupling factor OS=Staphylococcus aureus (strain MW2) GN=mfd PE=3 SV=1 Length = 1168
Score = 93.2 bits (230), Expect(2) = 6e-20 Identities = 45/102 (44%), Positives = 67/102 (65%) Frame = -3
Query: 371 KKAALQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTII 192 K+ LQ L P +I +A+G+ + LEETM F E +L+ T IIE+G+D+ NT+I Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902
Query: 191 VEDIHLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEA 66 +ED FGL+Q+YQLRGRVGR+ + +AY +P + L++ A Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETA 944
Score = 23.1 bits (48), Expect(2) = 6e-20 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = -1
Query: 61 ERLLAIEECCDLGQDFKLA 5 +RL AI+E +LG FK+A Sbjct: 946 DRLQAIKEFTELGSGFKIA 964
>sp|Q6GBY5|MFD_STAAS Transcription-repair-coupling factor OS=Staphylococcus aureus (strain MSSA476) GN=mfd PE=3 SV=1 Length = 1168
Score = 93.2 bits (230), Expect(2) = 6e-20 Identities = 45/102 (44%), Positives = 67/102 (65%) Frame = -3
Query: 371 KKAALQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTII 192 K+ LQ L P +I +A+G+ + LEETM F E +L+ T IIE+G+D+ NT+I Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902
Query: 191 VEDIHLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEA 66 +ED FGL+Q+YQLRGRVGR+ + +AY +P + L++ A Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETA 944
Score = 23.1 bits (48), Expect(2) = 6e-20 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = -1
Query: 61 ERLLAIEECCDLGQDFKLA 5 +RL AI+E +LG FK+A Sbjct: 946 DRLQAIKEFTELGSGFKIA 964
>sp|Q6GJG8|MFD_STAAR Transcription-repair-coupling factor OS=Staphylococcus aureus (strain MRSA252) GN=mfd PE=3 SV=1 Length = 1168
Score = 93.2 bits (230), Expect(2) = 6e-20 Identities = 45/102 (44%), Positives = 67/102 (65%) Frame = -3
Query: 371 KKAALQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTII 192 K+ LQ L P +I +A+G+ + LEETM F E +L+ T IIE+G+D+ NT+I Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902
Query: 191 VEDIHLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEA 66 +ED FGL+Q+YQLRGRVGR+ + +AY +P + L++ A Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETA 944
Score = 23.1 bits (48), Expect(2) = 6e-20 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = -1
Query: 61 ERLLAIEECCDLGQDFKLA 5 +RL AI+E +LG FK+A Sbjct: 946 DRLQAIKEFTELGSGFKIA 964
>sp|Q7A7B2|MFD_STAAN Transcription-repair-coupling factor OS=Staphylococcus aureus (strain N315) GN=mfd PE=1 SV=1 Length = 1168
Score = 93.2 bits (230), Expect(2) = 6e-20 Identities = 45/102 (44%), Positives = 67/102 (65%) Frame = -3
Query: 371 KKAALQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTII 192 K+ LQ L P +I +A+G+ + LEETM F E +L+ T IIE+G+D+ NT+I Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902
Query: 191 VEDIHLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEA 66 +ED FGL+Q+YQLRGRVGR+ + +AY +P + L++ A Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETA 944
Score = 23.1 bits (48), Expect(2) = 6e-20 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = -1
Query: 61 ERLLAIEECCDLGQDFKLA 5 +RL AI+E +LG FK+A Sbjct: 946 DRLQAIKEFTELGSGFKIA 964
>sp|Q99WA0|MFD_STAAM Transcription-repair-coupling factor OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=mfd PE=1 SV=1 Length = 1168
Score = 93.2 bits (230), Expect(2) = 6e-20 Identities = 45/102 (44%), Positives = 67/102 (65%) Frame = -3
Query: 371 KKAALQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTII 192 K+ LQ L P +I +A+G+ + LEETM F E +L+ T IIE+G+D+ NT+I Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902
Query: 191 VEDIHLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEA 66 +ED FGL+Q+YQLRGRVGR+ + +AY +P + L++ A Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETA 944
Score = 23.1 bits (48), Expect(2) = 6e-20 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = -1
Query: 61 ERLLAIEECCDLGQDFKLA 5 +RL AI+E +LG FK+A Sbjct: 946 DRLQAIKEFTELGSGFKIA 964
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S9T2 |
Definition |
tr|A9S9T2|A9S9T2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
105 |
Score (bit) |
149.0 |
E-value |
1.0e-39 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920422|Adiantum capillus-veneris mRNA, clone: YMU001_000136_H06. (373 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9S9T2|A9S9T2_PHYPA Predicted protein OS=Physcomitrella paten... 149 1e-39 tr|Q9SGA4|Q9SGA4_ARATH Putative helicase OS=Arabidopsis thaliana... 139 2e-35 tr|Q94JY9|Q94JY9_ARATH Putative helicase OS=Arabidopsis thaliana... 139 2e-35 tr|Q8H0S6|Q8H0S6_ARATH Putative helicase OS=Arabidopsis thaliana... 139 2e-35 tr|Q2HRX1|Q2HRX1_MEDTR Helicase, C-terminal; Haem peroxidase, pl... 129 1e-32 tr|Q7V7H1|Q7V7H1_PROMM Transcriptional-repair coupling factor OS... 116 5e-25 tr|A2C9M3|A2C9M3_PROM3 Transcriptional-repair coupling factor OS... 116 5e-25 tr|A0YJ76|A0YJ76_9CYAN Transcription-repair coupling factor OS=L... 116 5e-25 tr|B5W2G2|B5W2G2_SPIMA Transcription-repair coupling factor OS=A... 116 6e-25 tr|B2J5R8|B2J5R8_NOSP7 Transcription-repair coupling factor OS=N... 115 8e-25 tr|Q8YLT1|Q8YLT1_ANASP Transcriptional-repair coupling factor OS... 114 2e-24 tr|Q7U709|Q7U709_SYNPX Transcriptional-repair coupling factor OS... 114 2e-24 tr|Q3M9F6|Q3M9F6_ANAVT Transcription-repair coupling factor OS=A... 114 2e-24 tr|Q3AK28|Q3AK28_SYNSC Transcription-repair coupling factor OS=S... 114 2e-24 tr|B4VR37|B4VR37_9CYAN Transcription-repair coupling factor OS=M... 114 2e-24 tr|B0JXS5|B0JXS5_MICAN Transcription-repair coupling factor OS=M... 114 2e-24 tr|A0ZKE2|A0ZKE2_NODSP Transcriptional-repair coupling factor OS... 114 2e-24 tr|A4RX81|A4RX81_OSTLU Predicted protein OS=Ostreococcus lucimar... 101 3e-24 tr|A3ZAV0|A3ZAV0_9SYNE Transcriptional-repair coupling factor OS... 114 3e-24 tr|Q31AS4|Q31AS4_PROM9 Transcription-repair coupling factor OS=P... 113 4e-24 tr|B1XL29|B1XL29_SYNP2 Transcription-repair coupling factor (TRC... 113 4e-24 tr|A2BRA3|A2BRA3_PROMS Transcriptional-repair coupling factor OS... 113 4e-24 tr|Q3AXP6|Q3AXP6_SYNS9 Transcription-repair coupling factor OS=S... 113 5e-24 tr|Q066U1|Q066U1_9SYNE Transcription-repair coupling factor OS=S... 113 5e-24 tr|B5II16|B5II16_9CHRO Transcription-repair coupling factor OS=C... 113 5e-24 tr|A5GLU1|A5GLU1_SYNPW Transcription-repair coupling factor OS=S... 112 7e-24 tr|Q5N5K1|Q5N5K1_SYNP6 Transcription-repair coupling factor OS=S... 112 9e-24 tr|Q31NL3|Q31NL3_SYNE7 Transcription-repair coupling factor OS=S... 112 9e-24 tr|Q05SQ5|Q05SQ5_9SYNE Transcriptional-repair coupling factor OS... 112 9e-24 tr|A8G4Z6|A8G4Z6_PROM2 Transcriptional-repair coupling factor OS... 112 1e-23
>tr|A9S9T2|A9S9T2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_210013 PE=4 SV=1 Length = 792
Score = 149 bits (377), Expect(2) = 1e-39 Identities = 68/105 (64%), Positives = 91/105 (86%) Frame = -3
Query: 368 KAALQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTIIV 189 KA L+ FP + IG+A+G+QSAT+LEE+M++F +G +LLCT I+ESGLDIRRVNTII+ Sbjct: 465 KAILESYFPDVGIGVAHGQQSATVLEESMEQFSEGTYLILLCTSIVESGLDIRRVNTIII 524
Query: 188 EDIHLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEAFGKI 54 ED+ LFGLAQ+YQLRGRVGR+D+EAHAY+F+P KE+LSD+A ++ Sbjct: 525 EDVQLFGLAQLYQLRGRVGRSDREAHAYMFHPSKENLSDDALERL 569
Score = 36.6 bits (83), Expect(2) = 1e-39 Identities = 15/21 (71%), Positives = 19/21 (90%) Frame = -1
Query: 64 LERLLAIEECCDLGQDFKLAE 2 LERL+A+E+CC LGQ F+LAE Sbjct: 566 LERLVALEDCCGLGQGFQLAE 586
>tr|Q9SGA4|Q9SGA4_ARATH Putative helicase OS=Arabidopsis thaliana GN=F1C9.16 PE=4 SV=1 Length = 822
Score = 139 bits (351), Expect(2) = 2e-35 Identities = 65/103 (63%), Positives = 85/103 (82%) Frame = -3
Query: 359 LQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTIIVEDI 180 L+ FP IDI +A+GKQ + LEETM+RF QG+ ++L+CT+I+ESGLDI+ NTII++D+ Sbjct: 499 LEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTIIIQDV 558
Query: 179 HLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEAFGKIA 51 FGLAQ+YQLRGRVGRADKEAHAYLFYP K LSD+A +++ Sbjct: 559 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLS 601
Score = 33.1 bits (74), Expect(2) = 2e-35 Identities = 15/21 (71%), Positives = 18/21 (85%) Frame = -1
Query: 64 LERLLAIEECCDLGQDFKLAE 2 LERL A+EEC +LGQ F+LAE Sbjct: 597 LERLSALEECRELGQGFQLAE 617
>tr|Q94JY9|Q94JY9_ARATH Putative helicase OS=Arabidopsis thaliana GN=F1C9.16 PE=2 SV=1 Length = 823
Score = 139 bits (351), Expect(2) = 2e-35 Identities = 65/103 (63%), Positives = 85/103 (82%) Frame = -3
Query: 359 LQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTIIVEDI 180 L+ FP IDI +A+GKQ + LEETM+RF QG+ ++L+CT+I+ESGLDI+ NTII++D+ Sbjct: 500 LEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTIIIQDV 559
Query: 179 HLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEAFGKIA 51 FGLAQ+YQLRGRVGRADKEAHAYLFYP K LSD+A +++ Sbjct: 560 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLS 602
Score = 33.1 bits (74), Expect(2) = 2e-35 Identities = 15/21 (71%), Positives = 18/21 (85%) Frame = -1
Query: 64 LERLLAIEECCDLGQDFKLAE 2 LERL A+EEC +LGQ F+LAE Sbjct: 598 LERLSALEECRELGQGFQLAE 618
>tr|Q8H0S6|Q8H0S6_ARATH Putative helicase OS=Arabidopsis thaliana GN=At3g02060 PE=2 SV=1 Length = 822
Score = 139 bits (351), Expect(2) = 2e-35 Identities = 65/103 (63%), Positives = 85/103 (82%) Frame = -3
Query: 359 LQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTIIVEDI 180 L+ FP IDI +A+GKQ + LEETM+RF QG+ ++L+CT+I+ESGLDI+ NTII++D+ Sbjct: 499 LEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTIIIQDV 558
Query: 179 HLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEAFGKIA 51 FGLAQ+YQLRGRVGRADKEAHAYLFYP K LSD+A +++ Sbjct: 559 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLS 601
Score = 33.1 bits (74), Expect(2) = 2e-35 Identities = 15/21 (71%), Positives = 18/21 (85%) Frame = -1
Query: 64 LERLLAIEECCDLGQDFKLAE 2 LERL A+EEC +LGQ F+LAE Sbjct: 597 LERLSALEECRELGQGFQLAE 617
>tr|Q2HRX1|Q2HRX1_MEDTR Helicase, C-terminal; Haem peroxidase, plant/fungal/bacterial (Fragment) OS=Medicago truncatula GN=MtrDRAFT_AC157890g1v2 PE=4 SV=1 Length = 494
Score = 129 bits (324), Expect(2) = 1e-32 Identities = 59/103 (57%), Positives = 83/103 (80%) Frame = -3
Query: 359 LQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTIIVEDI 180 L+ FP ++I +A+GKQ + LE+TM++F GE ++L+ T+I+ESGLDI+ NTII++D+ Sbjct: 333 LEEAFPDVEIAVAHGKQFSKQLEDTMEKFTLGEIKILISTNIVESGLDIQNANTIIIQDV 392
Query: 179 HLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEAFGKIA 51 FGLAQ+YQLRGRVGRADKEA+AYLFYP K L+D+A ++A Sbjct: 393 QQFGLAQLYQLRGRVGRADKEAYAYLFYPDKSLLTDQALERLA 435
Score = 33.5 bits (75), Expect(2) = 1e-32 Identities = 15/21 (71%), Positives = 18/21 (85%) Frame = -1
Query: 64 LERLLAIEECCDLGQDFKLAE 2 LERL A+EEC +LGQ F+LAE Sbjct: 431 LERLAALEECRELGQGFQLAE 451
>tr|Q7V7H1|Q7V7H1_PROMM Transcriptional-repair coupling factor OS=Prochlorococcus marinus (strain MIT 9313) GN=PMT0775 PE=4 SV=1 Length = 1193
Score = 116 bits (291), Expect = 5e-25 Identities = 56/98 (57%), Positives = 75/98 (76%) Frame = -3
Query: 359 LQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTIIVEDI 180 LQ++ P + + +A+G+ + LE +M F+ GE+ L+LCT I+ESGLDI RVNTI++ED Sbjct: 851 LQQMLPDLKLLVAHGQMAEGELESSMVAFNAGEADLMLCTTIVESGLDIPRVNTILIEDA 910
Query: 179 HLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEA 66 H FGLAQ+YQLRGRVGR+ +AHA+LFYP SLSD A Sbjct: 911 HKFGLAQLYQLRGRVGRSGVQAHAWLFYPGDASLSDTA 948
>tr|A2C9M3|A2C9M3_PROM3 Transcriptional-repair coupling factor OS=Prochlorococcus marinus (strain MIT 9303) GN=mfd PE=4 SV=1 Length = 1193
Score = 116 bits (291), Expect = 5e-25 Identities = 56/98 (57%), Positives = 75/98 (76%) Frame = -3
Query: 359 LQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTIIVEDI 180 LQ++ P + + +A+G+ + LE +M F+ GE+ L+LCT I+ESGLDI RVNTI++ED Sbjct: 851 LQQMLPDLKLLVAHGQMAEGELESSMVAFNAGEADLMLCTTIVESGLDIPRVNTILIEDA 910
Query: 179 HLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEA 66 H FGLAQ+YQLRGRVGR+ +AHA+LFYP SLSD A Sbjct: 911 HKFGLAQLYQLRGRVGRSGVQAHAWLFYPGDASLSDAA 948
>tr|A0YJ76|A0YJ76_9CYAN Transcription-repair coupling factor OS=Lyngbya sp. PCC 8106 GN=L8106_02142 PE=4 SV=1 Length = 1147
Score = 116 bits (291), Expect = 5e-25 Identities = 57/106 (53%), Positives = 80/106 (75%), Gaps = 4/106 (3%) Frame = -3
Query: 371 KKAALQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTII 192 K + ++ + PS I +A+G+ +A LE M F+ GE+++L+CT IIESGLDI RVNTI+ Sbjct: 813 KSSKIREMVPSARIAVAHGQMNAAELESIMLTFNAGEAEILVCTTIIESGLDIPRVNTIL 872
Query: 191 VEDIHLFGLAQIYQLRGRVGRADKEAHAYLFYPL----KESLSDEA 66 +ED H FGLAQ+YQLRGRVGR+ +AHA+LFYP+ + +LSD+A Sbjct: 873 IEDAHRFGLAQLYQLRGRVGRSGVQAHAWLFYPVNADGRAALSDDA 918
>tr|B5W2G2|B5W2G2_SPIMA Transcription-repair coupling factor OS=Arthrospira maxima CS-328 GN=AmaxDRAFT_2960 PE=4 SV=1 Length = 1167
Score = 116 bits (290), Expect = 6e-25 Identities = 57/95 (60%), Positives = 71/95 (74%) Frame = -3
Query: 371 KKAALQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTII 192 K AA++ + PS + IA+G+ A LE M F GE+ +L+CT IIESGLDI RVNTI+ Sbjct: 843 KSAAIREMVPSARLAIAHGQMEAGELESIMLTFSAGEADILVCTTIIESGLDIPRVNTIL 902
Query: 191 VEDIHLFGLAQIYQLRGRVGRADKEAHAYLFYPLK 87 VED H FGL Q+YQLRGRVGRA +AHA+LFYP+K Sbjct: 903 VEDAHKFGLGQLYQLRGRVGRAGVQAHAWLFYPVK 937
>tr|B2J5R8|B2J5R8_NOSP7 Transcription-repair coupling factor OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=Npun_R5494 PE=4 SV=1 Length = 1170
Score = 115 bits (289), Expect = 8e-25 Identities = 57/100 (57%), Positives = 72/100 (72%) Frame = -3
Query: 365 AALQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTIIVE 186 A L+ + P IA+G+ + LE TM F G++ +L+CT IIESGLDI RVNTI++E Sbjct: 849 ANLREVIPGARFAIAHGQMDESELESTMLTFSNGDADILVCTTIIESGLDIPRVNTILIE 908
Query: 185 DIHLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEA 66 D H FGLAQ+YQLRGRVGRA +AHA+LFYP + LSD A Sbjct: 909 DAHRFGLAQLYQLRGRVGRAGIQAHAWLFYPKQRQLSDAA 948
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