BP920422
Clone id YMU001_000136_H06
Library
Length 373
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000136_H06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TTTCAGCCAGCTTGAAGTCTTGCCCTAGATCACAACACTCCTCTATGGCAAGCAATCTTT
CCAAAGGCTTCATCTGATAGACTTTCCTTTAGAGGATAGAAAAGATAAGCATGTGCTTCC
TTATCTGCTCTTCCAACTCTCCCCCGTAGCTGGTAAATCTGAGCCAATCCAAAAAGGTGG
ATATCTTCAACAATAATCGTGTTAACGCGTCTTATGTCAAGACCACTTTCAATTATGTCT
GTGCACAAAAGAAGTTGTGACTCGCCTTGATCAAAGCGATCCATGGTCTCTTCAAGTAGA
GTTGCACTTTGTTTTCCATATGCAATGCCAATATCTATGCTTGGAAATAATCTTTGCAAA
GCGGCCTTCTTGG
■■Homology search results ■■ -
sp_hit_id Q55750
Definition sp|Q55750|MFD_SYNY3 Transcription-repair-coupling factor OS=Synechocystis sp. (strain PCC 6803)
Align length 98
Score (bit) 110.0
E-value 3.0e-24
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920422|Adiantum capillus-veneris mRNA, clone:
YMU001_000136_H06.
(373 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q55750|MFD_SYNY3 Transcription-repair-coupling factor OS=Syne... 110 3e-24
sp|Q49V12|MFD_STAS1 Transcription-repair-coupling factor OS=Stap... 95 1e-20
sp|Q5HRQ2|MFD_STAEQ Transcription-repair-coupling factor OS=Stap... 93 2e-20
sp|O52236|MFD_MYXXA Transcription-repair-coupling factor OS=Myxo... 96 6e-20
sp|Q8CMT1|MFD_STAES Transcription-repair-coupling factor OS=Stap... 93 6e-20
sp|Q8NXZ6|MFD_STAAW Transcription-repair-coupling factor OS=Stap... 93 6e-20
sp|Q6GBY5|MFD_STAAS Transcription-repair-coupling factor OS=Stap... 93 6e-20
sp|Q6GJG8|MFD_STAAR Transcription-repair-coupling factor OS=Stap... 93 6e-20
sp|Q7A7B2|MFD_STAAN Transcription-repair-coupling factor OS=Stap... 93 6e-20
sp|Q99WA0|MFD_STAAM Transcription-repair-coupling factor OS=Stap... 93 6e-20
sp|Q5HIH2|MFD_STAAC Transcription-repair-coupling factor OS=Stap... 93 6e-20
sp|Q2YVY2|MFD_STAAB Transcription-repair-coupling factor OS=Stap... 93 6e-20
sp|Q2G0R8|MFD_STAA8 Transcription-repair-coupling factor OS=Stap... 93 6e-20
sp|Q2FJD8|MFD_STAA3 Transcription-repair-coupling factor OS=Stap... 93 6e-20
sp|Q4L3G0|MFD_STAHJ Transcription-repair-coupling factor OS=Stap... 91 1e-19
sp|P64326|MFD_MYCTU Transcription-repair-coupling factor OS=Myco... 94 2e-19
sp|P64327|MFD_MYCBO Transcription-repair-coupling factor OS=Myco... 94 2e-19
sp|O51568|MFD_BORBU Transcription-repair-coupling factor OS=Borr... 89 7e-19
sp|Q89AK2|MFD_BUCBP Transcription-repair-coupling factor OS=Buch... 91 2e-18
sp|P37474|MFD_BACSU Transcription-repair-coupling factor OS=Baci... 84 3e-17
sp|O26066|MFD_HELPY Transcription-repair-coupling factor OS=Heli... 86 4e-17
sp|Q9ZJ57|MFD_HELPJ Transcription-repair-coupling factor OS=Heli... 86 4e-17
sp|Q1RI82|MFD_RICBR Transcription-repair-coupling factor OS=Rick... 83 5e-16
sp|Q92H58|MFD_RICCN Transcription-repair-coupling factor OS=Rick... 82 6e-16
sp|P30958|MFD_ECOLI Transcription-repair-coupling factor OS=Esch... 82 8e-16
sp|P57381|MFD_BUCAI Transcription-repair-coupling factor OS=Buch... 80 4e-15
sp|Q9AKD5|MFD_RICTY Transcription-repair-coupling factor OS=Rick... 79 5e-15
sp|Q4UMJ0|MFD_RICFE Transcription-repair-coupling factor OS=Rick... 79 7e-15
sp|O05955|MFD_RICPR Transcription-repair-coupling factor OS=Rick... 78 1e-14
sp|P45128|MFD_HAEIN Transcription-repair-coupling factor OS=Haem... 77 3e-14

>sp|Q55750|MFD_SYNY3 Transcription-repair-coupling factor
OS=Synechocystis sp. (strain PCC 6803) GN=mfd PE=3 SV=1
Length = 1199

Score = 110 bits (274), Expect = 3e-24
Identities = 54/98 (55%), Positives = 74/98 (75%)
Frame = -3

Query: 359 LQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTIIVEDI 180
L+++ PS I I +G+ + LE TM F+ GE+ +L+CT IIE+GLDI RVNTIIVED
Sbjct: 875 LRQMVPSARIAIGHGQMEESELESTMLAFNDGEADILVCTTIIEAGLDIPRVNTIIVEDA 934

Query: 179 HLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEA 66
FGLAQ+YQLRGRVGR+ +AHA+L YP ++ L+++A
Sbjct: 935 QKFGLAQLYQLRGRVGRSGIQAHAWLLYPNQKQLTEKA 972


>sp|Q49V12|MFD_STAS1 Transcription-repair-coupling factor
OS=Staphylococcus saprophyticus subsp. saprophyticus
(strain ATCC 15305 / DSM 20229) GN=mfd PE=3 SV=1
Length = 1170

Score = 95.1 bits (235), Expect(2) = 1e-20
Identities = 46/102 (45%), Positives = 68/102 (66%)
Frame = -3

Query: 371 KKAALQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTII 192
K+ LQ L P +IG+A+G+ + LEETM F E +++ T IIE+G+D+ NT+I
Sbjct: 845 KREQLQMLMPDANIGVAHGQMNERDLEETMLSFINHEYDIIVTTTIIETGVDVPNANTLI 904

Query: 191 VEDIHLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEA 66
+ED FGL+Q+YQLRGRVGR+ + +AY +P + LS+ A
Sbjct: 905 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPTNKVLSETA 946



Score = 23.5 bits (49), Expect(2) = 1e-20
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1

Query: 85 KVYQMKPLERLLAIEECCDLGQDFKLA 5
KV +RL AI+E +LG FK+A
Sbjct: 940 KVLSETAEDRLQAIKEFTELGSGFKIA 966


>sp|Q5HRQ2|MFD_STAEQ Transcription-repair-coupling factor
OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A)
GN=mfd PE=3 SV=1
Length = 1169

Score = 93.2 bits (230), Expect(2) = 2e-20
Identities = 45/102 (44%), Positives = 68/102 (66%)
Frame = -3

Query: 371 KKAALQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTII 192
K+ LQRL P +I +A+G+ + LEETM F E +L+ T IIE+G+D+ NT+I
Sbjct: 844 KREQLQRLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLI 903

Query: 191 VEDIHLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEA 66
+E+ FGL+Q+YQLRGRVGR+ + +AY +P + L++ A
Sbjct: 904 IEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETA 945



Score = 24.6 bits (52), Expect(2) = 2e-20
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1

Query: 85 KVYQMKPLERLLAIEECCDLGQDFKLA 5
KV ERL AI+E +LG FK+A
Sbjct: 939 KVLNETAEERLQAIKEFTELGSGFKIA 965


>sp|O52236|MFD_MYXXA Transcription-repair-coupling factor
OS=Myxococcus xanthus GN=mfd PE=3 SV=1
Length = 1201

Score = 95.9 bits (237), Expect = 6e-20
Identities = 47/98 (47%), Positives = 67/98 (68%)
Frame = -3

Query: 359 LQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTIIVEDI 180
L+ L P + IG+A+G+ LE+ M F + + Q+LLCT IIESG+DI NT+IV
Sbjct: 884 LRALVPQVSIGVAHGQMGEGQLEKVMLAFTEKKYQVLLCTSIIESGIDISSANTMIVNRA 943

Query: 179 HLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEA 66
FGLAQ+YQLRGRVGR+ + A+AYL P + +++ +A
Sbjct: 944 DQFGLAQLYQLRGRVGRSKERAYAYLLVPSRRAVTKDA 981


>sp|Q8CMT1|MFD_STAES Transcription-repair-coupling factor
OS=Staphylococcus epidermidis (strain ATCC 12228) GN=mfd
PE=3 SV=1
Length = 1169

Score = 93.2 bits (230), Expect(2) = 6e-20
Identities = 45/102 (44%), Positives = 68/102 (66%)
Frame = -3

Query: 371 KKAALQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTII 192
K+ LQRL P +I +A+G+ + LEETM F E +L+ T IIE+G+D+ NT+I
Sbjct: 844 KREQLQRLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLI 903

Query: 191 VEDIHLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEA 66
+E+ FGL+Q+YQLRGRVGR+ + +AY +P + L++ A
Sbjct: 904 IEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETA 945



Score = 23.1 bits (48), Expect(2) = 6e-20
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1

Query: 85 KVYQMKPLERLLAIEECCDLGQDFKLA 5
KV ERL I+E +LG FK+A
Sbjct: 939 KVLNETAEERLQTIKEFTELGSGFKIA 965


>sp|Q8NXZ6|MFD_STAAW Transcription-repair-coupling factor
OS=Staphylococcus aureus (strain MW2) GN=mfd PE=3 SV=1
Length = 1168

Score = 93.2 bits (230), Expect(2) = 6e-20
Identities = 45/102 (44%), Positives = 67/102 (65%)
Frame = -3

Query: 371 KKAALQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTII 192
K+ LQ L P +I +A+G+ + LEETM F E +L+ T IIE+G+D+ NT+I
Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902

Query: 191 VEDIHLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEA 66
+ED FGL+Q+YQLRGRVGR+ + +AY +P + L++ A
Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETA 944



Score = 23.1 bits (48), Expect(2) = 6e-20
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1

Query: 61 ERLLAIEECCDLGQDFKLA 5
+RL AI+E +LG FK+A
Sbjct: 946 DRLQAIKEFTELGSGFKIA 964


>sp|Q6GBY5|MFD_STAAS Transcription-repair-coupling factor
OS=Staphylococcus aureus (strain MSSA476) GN=mfd PE=3
SV=1
Length = 1168

Score = 93.2 bits (230), Expect(2) = 6e-20
Identities = 45/102 (44%), Positives = 67/102 (65%)
Frame = -3

Query: 371 KKAALQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTII 192
K+ LQ L P +I +A+G+ + LEETM F E +L+ T IIE+G+D+ NT+I
Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902

Query: 191 VEDIHLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEA 66
+ED FGL+Q+YQLRGRVGR+ + +AY +P + L++ A
Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETA 944



Score = 23.1 bits (48), Expect(2) = 6e-20
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1

Query: 61 ERLLAIEECCDLGQDFKLA 5
+RL AI+E +LG FK+A
Sbjct: 946 DRLQAIKEFTELGSGFKIA 964


>sp|Q6GJG8|MFD_STAAR Transcription-repair-coupling factor
OS=Staphylococcus aureus (strain MRSA252) GN=mfd PE=3
SV=1
Length = 1168

Score = 93.2 bits (230), Expect(2) = 6e-20
Identities = 45/102 (44%), Positives = 67/102 (65%)
Frame = -3

Query: 371 KKAALQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTII 192
K+ LQ L P +I +A+G+ + LEETM F E +L+ T IIE+G+D+ NT+I
Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902

Query: 191 VEDIHLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEA 66
+ED FGL+Q+YQLRGRVGR+ + +AY +P + L++ A
Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETA 944



Score = 23.1 bits (48), Expect(2) = 6e-20
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1

Query: 61 ERLLAIEECCDLGQDFKLA 5
+RL AI+E +LG FK+A
Sbjct: 946 DRLQAIKEFTELGSGFKIA 964


>sp|Q7A7B2|MFD_STAAN Transcription-repair-coupling factor
OS=Staphylococcus aureus (strain N315) GN=mfd PE=1 SV=1
Length = 1168

Score = 93.2 bits (230), Expect(2) = 6e-20
Identities = 45/102 (44%), Positives = 67/102 (65%)
Frame = -3

Query: 371 KKAALQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTII 192
K+ LQ L P +I +A+G+ + LEETM F E +L+ T IIE+G+D+ NT+I
Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902

Query: 191 VEDIHLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEA 66
+ED FGL+Q+YQLRGRVGR+ + +AY +P + L++ A
Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETA 944



Score = 23.1 bits (48), Expect(2) = 6e-20
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1

Query: 61 ERLLAIEECCDLGQDFKLA 5
+RL AI+E +LG FK+A
Sbjct: 946 DRLQAIKEFTELGSGFKIA 964


>sp|Q99WA0|MFD_STAAM Transcription-repair-coupling factor
OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=mfd PE=1 SV=1
Length = 1168

Score = 93.2 bits (230), Expect(2) = 6e-20
Identities = 45/102 (44%), Positives = 67/102 (65%)
Frame = -3

Query: 371 KKAALQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTII 192
K+ LQ L P +I +A+G+ + LEETM F E +L+ T IIE+G+D+ NT+I
Sbjct: 843 KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLI 902

Query: 191 VEDIHLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEA 66
+ED FGL+Q+YQLRGRVGR+ + +AY +P + L++ A
Sbjct: 903 IEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETA 944



Score = 23.1 bits (48), Expect(2) = 6e-20
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1

Query: 61 ERLLAIEECCDLGQDFKLA 5
+RL AI+E +LG FK+A
Sbjct: 946 DRLQAIKEFTELGSGFKIA 964


tr_hit_id A9S9T2
Definition tr|A9S9T2|A9S9T2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 105
Score (bit) 149.0
E-value 1.0e-39
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920422|Adiantum capillus-veneris mRNA, clone:
YMU001_000136_H06.
(373 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9S9T2|A9S9T2_PHYPA Predicted protein OS=Physcomitrella paten... 149 1e-39
tr|Q9SGA4|Q9SGA4_ARATH Putative helicase OS=Arabidopsis thaliana... 139 2e-35
tr|Q94JY9|Q94JY9_ARATH Putative helicase OS=Arabidopsis thaliana... 139 2e-35
tr|Q8H0S6|Q8H0S6_ARATH Putative helicase OS=Arabidopsis thaliana... 139 2e-35
tr|Q2HRX1|Q2HRX1_MEDTR Helicase, C-terminal; Haem peroxidase, pl... 129 1e-32
tr|Q7V7H1|Q7V7H1_PROMM Transcriptional-repair coupling factor OS... 116 5e-25
tr|A2C9M3|A2C9M3_PROM3 Transcriptional-repair coupling factor OS... 116 5e-25
tr|A0YJ76|A0YJ76_9CYAN Transcription-repair coupling factor OS=L... 116 5e-25
tr|B5W2G2|B5W2G2_SPIMA Transcription-repair coupling factor OS=A... 116 6e-25
tr|B2J5R8|B2J5R8_NOSP7 Transcription-repair coupling factor OS=N... 115 8e-25
tr|Q8YLT1|Q8YLT1_ANASP Transcriptional-repair coupling factor OS... 114 2e-24
tr|Q7U709|Q7U709_SYNPX Transcriptional-repair coupling factor OS... 114 2e-24
tr|Q3M9F6|Q3M9F6_ANAVT Transcription-repair coupling factor OS=A... 114 2e-24
tr|Q3AK28|Q3AK28_SYNSC Transcription-repair coupling factor OS=S... 114 2e-24
tr|B4VR37|B4VR37_9CYAN Transcription-repair coupling factor OS=M... 114 2e-24
tr|B0JXS5|B0JXS5_MICAN Transcription-repair coupling factor OS=M... 114 2e-24
tr|A0ZKE2|A0ZKE2_NODSP Transcriptional-repair coupling factor OS... 114 2e-24
tr|A4RX81|A4RX81_OSTLU Predicted protein OS=Ostreococcus lucimar... 101 3e-24
tr|A3ZAV0|A3ZAV0_9SYNE Transcriptional-repair coupling factor OS... 114 3e-24
tr|Q31AS4|Q31AS4_PROM9 Transcription-repair coupling factor OS=P... 113 4e-24
tr|B1XL29|B1XL29_SYNP2 Transcription-repair coupling factor (TRC... 113 4e-24
tr|A2BRA3|A2BRA3_PROMS Transcriptional-repair coupling factor OS... 113 4e-24
tr|Q3AXP6|Q3AXP6_SYNS9 Transcription-repair coupling factor OS=S... 113 5e-24
tr|Q066U1|Q066U1_9SYNE Transcription-repair coupling factor OS=S... 113 5e-24
tr|B5II16|B5II16_9CHRO Transcription-repair coupling factor OS=C... 113 5e-24
tr|A5GLU1|A5GLU1_SYNPW Transcription-repair coupling factor OS=S... 112 7e-24
tr|Q5N5K1|Q5N5K1_SYNP6 Transcription-repair coupling factor OS=S... 112 9e-24
tr|Q31NL3|Q31NL3_SYNE7 Transcription-repair coupling factor OS=S... 112 9e-24
tr|Q05SQ5|Q05SQ5_9SYNE Transcriptional-repair coupling factor OS... 112 9e-24
tr|A8G4Z6|A8G4Z6_PROM2 Transcriptional-repair coupling factor OS... 112 1e-23

>tr|A9S9T2|A9S9T2_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_210013 PE=4 SV=1
Length = 792

Score = 149 bits (377), Expect(2) = 1e-39
Identities = 68/105 (64%), Positives = 91/105 (86%)
Frame = -3

Query: 368 KAALQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTIIV 189
KA L+ FP + IG+A+G+QSAT+LEE+M++F +G +LLCT I+ESGLDIRRVNTII+
Sbjct: 465 KAILESYFPDVGIGVAHGQQSATVLEESMEQFSEGTYLILLCTSIVESGLDIRRVNTIII 524

Query: 188 EDIHLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEAFGKI 54
ED+ LFGLAQ+YQLRGRVGR+D+EAHAY+F+P KE+LSD+A ++
Sbjct: 525 EDVQLFGLAQLYQLRGRVGRSDREAHAYMFHPSKENLSDDALERL 569



Score = 36.6 bits (83), Expect(2) = 1e-39
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = -1

Query: 64 LERLLAIEECCDLGQDFKLAE 2
LERL+A+E+CC LGQ F+LAE
Sbjct: 566 LERLVALEDCCGLGQGFQLAE 586


>tr|Q9SGA4|Q9SGA4_ARATH Putative helicase OS=Arabidopsis thaliana
GN=F1C9.16 PE=4 SV=1
Length = 822

Score = 139 bits (351), Expect(2) = 2e-35
Identities = 65/103 (63%), Positives = 85/103 (82%)
Frame = -3

Query: 359 LQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTIIVEDI 180
L+ FP IDI +A+GKQ + LEETM+RF QG+ ++L+CT+I+ESGLDI+ NTII++D+
Sbjct: 499 LEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTIIIQDV 558

Query: 179 HLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEAFGKIA 51
FGLAQ+YQLRGRVGRADKEAHAYLFYP K LSD+A +++
Sbjct: 559 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLS 601



Score = 33.1 bits (74), Expect(2) = 2e-35
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = -1

Query: 64 LERLLAIEECCDLGQDFKLAE 2
LERL A+EEC +LGQ F+LAE
Sbjct: 597 LERLSALEECRELGQGFQLAE 617


>tr|Q94JY9|Q94JY9_ARATH Putative helicase OS=Arabidopsis thaliana
GN=F1C9.16 PE=2 SV=1
Length = 823

Score = 139 bits (351), Expect(2) = 2e-35
Identities = 65/103 (63%), Positives = 85/103 (82%)
Frame = -3

Query: 359 LQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTIIVEDI 180
L+ FP IDI +A+GKQ + LEETM+RF QG+ ++L+CT+I+ESGLDI+ NTII++D+
Sbjct: 500 LEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTIIIQDV 559

Query: 179 HLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEAFGKIA 51
FGLAQ+YQLRGRVGRADKEAHAYLFYP K LSD+A +++
Sbjct: 560 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLS 602



Score = 33.1 bits (74), Expect(2) = 2e-35
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = -1

Query: 64 LERLLAIEECCDLGQDFKLAE 2
LERL A+EEC +LGQ F+LAE
Sbjct: 598 LERLSALEECRELGQGFQLAE 618


>tr|Q8H0S6|Q8H0S6_ARATH Putative helicase OS=Arabidopsis thaliana
GN=At3g02060 PE=2 SV=1
Length = 822

Score = 139 bits (351), Expect(2) = 2e-35
Identities = 65/103 (63%), Positives = 85/103 (82%)
Frame = -3

Query: 359 LQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTIIVEDI 180
L+ FP IDI +A+GKQ + LEETM+RF QG+ ++L+CT+I+ESGLDI+ NTII++D+
Sbjct: 499 LEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTIIIQDV 558

Query: 179 HLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEAFGKIA 51
FGLAQ+YQLRGRVGRADKEAHAYLFYP K LSD+A +++
Sbjct: 559 QQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLS 601



Score = 33.1 bits (74), Expect(2) = 2e-35
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = -1

Query: 64 LERLLAIEECCDLGQDFKLAE 2
LERL A+EEC +LGQ F+LAE
Sbjct: 597 LERLSALEECRELGQGFQLAE 617


>tr|Q2HRX1|Q2HRX1_MEDTR Helicase, C-terminal; Haem peroxidase,
plant/fungal/bacterial (Fragment) OS=Medicago truncatula
GN=MtrDRAFT_AC157890g1v2 PE=4 SV=1
Length = 494

Score = 129 bits (324), Expect(2) = 1e-32
Identities = 59/103 (57%), Positives = 83/103 (80%)
Frame = -3

Query: 359 LQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTIIVEDI 180
L+ FP ++I +A+GKQ + LE+TM++F GE ++L+ T+I+ESGLDI+ NTII++D+
Sbjct: 333 LEEAFPDVEIAVAHGKQFSKQLEDTMEKFTLGEIKILISTNIVESGLDIQNANTIIIQDV 392

Query: 179 HLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEAFGKIA 51
FGLAQ+YQLRGRVGRADKEA+AYLFYP K L+D+A ++A
Sbjct: 393 QQFGLAQLYQLRGRVGRADKEAYAYLFYPDKSLLTDQALERLA 435



Score = 33.5 bits (75), Expect(2) = 1e-32
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = -1

Query: 64 LERLLAIEECCDLGQDFKLAE 2
LERL A+EEC +LGQ F+LAE
Sbjct: 431 LERLAALEECRELGQGFQLAE 451


>tr|Q7V7H1|Q7V7H1_PROMM Transcriptional-repair coupling factor
OS=Prochlorococcus marinus (strain MIT 9313) GN=PMT0775
PE=4 SV=1
Length = 1193

Score = 116 bits (291), Expect = 5e-25
Identities = 56/98 (57%), Positives = 75/98 (76%)
Frame = -3

Query: 359 LQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTIIVEDI 180
LQ++ P + + +A+G+ + LE +M F+ GE+ L+LCT I+ESGLDI RVNTI++ED
Sbjct: 851 LQQMLPDLKLLVAHGQMAEGELESSMVAFNAGEADLMLCTTIVESGLDIPRVNTILIEDA 910

Query: 179 HLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEA 66
H FGLAQ+YQLRGRVGR+ +AHA+LFYP SLSD A
Sbjct: 911 HKFGLAQLYQLRGRVGRSGVQAHAWLFYPGDASLSDTA 948


>tr|A2C9M3|A2C9M3_PROM3 Transcriptional-repair coupling factor
OS=Prochlorococcus marinus (strain MIT 9303) GN=mfd PE=4
SV=1
Length = 1193

Score = 116 bits (291), Expect = 5e-25
Identities = 56/98 (57%), Positives = 75/98 (76%)
Frame = -3

Query: 359 LQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTIIVEDI 180
LQ++ P + + +A+G+ + LE +M F+ GE+ L+LCT I+ESGLDI RVNTI++ED
Sbjct: 851 LQQMLPDLKLLVAHGQMAEGELESSMVAFNAGEADLMLCTTIVESGLDIPRVNTILIEDA 910

Query: 179 HLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEA 66
H FGLAQ+YQLRGRVGR+ +AHA+LFYP SLSD A
Sbjct: 911 HKFGLAQLYQLRGRVGRSGVQAHAWLFYPGDASLSDAA 948


>tr|A0YJ76|A0YJ76_9CYAN Transcription-repair coupling factor
OS=Lyngbya sp. PCC 8106 GN=L8106_02142 PE=4 SV=1
Length = 1147

Score = 116 bits (291), Expect = 5e-25
Identities = 57/106 (53%), Positives = 80/106 (75%), Gaps = 4/106 (3%)
Frame = -3

Query: 371 KKAALQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTII 192
K + ++ + PS I +A+G+ +A LE M F+ GE+++L+CT IIESGLDI RVNTI+
Sbjct: 813 KSSKIREMVPSARIAVAHGQMNAAELESIMLTFNAGEAEILVCTTIIESGLDIPRVNTIL 872

Query: 191 VEDIHLFGLAQIYQLRGRVGRADKEAHAYLFYPL----KESLSDEA 66
+ED H FGLAQ+YQLRGRVGR+ +AHA+LFYP+ + +LSD+A
Sbjct: 873 IEDAHRFGLAQLYQLRGRVGRSGVQAHAWLFYPVNADGRAALSDDA 918


>tr|B5W2G2|B5W2G2_SPIMA Transcription-repair coupling factor
OS=Arthrospira maxima CS-328 GN=AmaxDRAFT_2960 PE=4 SV=1
Length = 1167

Score = 116 bits (290), Expect = 6e-25
Identities = 57/95 (60%), Positives = 71/95 (74%)
Frame = -3

Query: 371 KKAALQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTII 192
K AA++ + PS + IA+G+ A LE M F GE+ +L+CT IIESGLDI RVNTI+
Sbjct: 843 KSAAIREMVPSARLAIAHGQMEAGELESIMLTFSAGEADILVCTTIIESGLDIPRVNTIL 902

Query: 191 VEDIHLFGLAQIYQLRGRVGRADKEAHAYLFYPLK 87
VED H FGL Q+YQLRGRVGRA +AHA+LFYP+K
Sbjct: 903 VEDAHKFGLGQLYQLRGRVGRAGVQAHAWLFYPVK 937


>tr|B2J5R8|B2J5R8_NOSP7 Transcription-repair coupling factor OS=Nostoc
punctiforme (strain ATCC 29133 / PCC 73102) GN=Npun_R5494
PE=4 SV=1
Length = 1170

Score = 115 bits (289), Expect = 8e-25
Identities = 57/100 (57%), Positives = 72/100 (72%)
Frame = -3

Query: 365 AALQRLFPSIDIGIAYGKQSATLLEETMDRFDQGESQLLLCTDIIESGLDIRRVNTIIVE 186
A L+ + P IA+G+ + LE TM F G++ +L+CT IIESGLDI RVNTI++E
Sbjct: 849 ANLREVIPGARFAIAHGQMDESELESTMLTFSNGDADILVCTTIIESGLDIPRVNTILIE 908

Query: 185 DIHLFGLAQIYQLRGRVGRADKEAHAYLFYPLKESLSDEA 66
D H FGLAQ+YQLRGRVGRA +AHA+LFYP + LSD A
Sbjct: 909 DAHRFGLAQLYQLRGRVGRAGIQAHAWLFYPKQRQLSDAA 948