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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920423
Clone id YMU001_000136_H07
Library
Length 400
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000136_H07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAAATCGAAAGGTTTGCGCTCTCTTCCTTCACCTCCTTCTCCTGACTATGCGTATGCTCT
TGCTCGACGCCCCATTCAGGAACGCCATCAGTCAAATTCCCGGGGTCAAGAGGCAATGCA
TCCTGAGGCAGAACCAGAAGATGCATCTGTGTATTATGAGGAGACAGATGTGCAAAGCGG
ACCTATCCGCGTGGAGTATTTTCAGAATGAAGAGGAAAGTGAGGAGGGAGGTCAGGAAGA
TGATCTGTATGATGGTATGGAAAGCTTAAGTATTGATGATGGGAGTCCGAGCTCATATGG
CGGGAGCTCCTGTCCACCATATGAACGTGCAGAAGCCCTTGCAAATGCACCTCAAAGGAA
AGGTATACACCTGAAGAGCTCTTCATGCTTGCCTCCTTTG
■■Homology search results ■■ -
sp_hit_id B1ARI9
Definition sp|B1ARI9|CQ072_MOUSE Uncharacterized protein C17orf72 homolog OS=Mus musculus
Align length 46
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920423|Adiantum capillus-veneris mRNA, clone:
YMU001_000136_H07.
         (400 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|B1ARI9|CQ072_MOUSE Uncharacterized protein C17orf72 homolog O...    32   1.3  
sp|Q9ES82|POPD2_MOUSE Popeye domain-containing protein 2 OS=Mus ...    31   2.2  
sp|Q61545|EWS_MOUSE RNA-binding protein EWS OS=Mus musculus GN=E...    30   3.7  
sp|Q01844|EWS_HUMAN RNA-binding protein EWS OS=Homo sapiens GN=E...    30   3.7  
sp|P98160|PGBM_HUMAN Basement membrane-specific heparan sulfate ...    30   4.9  
sp|Q9DB85|HUCE1_MOUSE Cerebral protein 1 homolog OS=Mus musculus...    30   4.9  
sp|Q05793|PGBM_MOUSE Basement membrane-specific heparan sulfate ...    29   6.3  
sp|Q14444|CAPR1_HUMAN Caprin-1 OS=Homo sapiens GN=CAPRIN1 PE=1 SV=2    29   6.3  
sp|Q16WU7|WSCD_AEDAE WSCD family member AAEL009094 OS=Aedes aegy...    29   8.3  

>sp|B1ARI9|CQ072_MOUSE Uncharacterized protein C17orf72 homolog
           OS=Mus musculus PE=2 SV=1
          Length = 187

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -3

Query: 155 NTQMHLLVLPQ-DALPLDPGNLTDGVPEWGVEQEHTHSQEKEVKEE 21
           N QMH L+L Q  A  L+PG      PEW     HT S E++++EE
Sbjct: 55  NAQMHQLLLGQLVADALNPG------PEWPSPPVHTDSHEEQMEEE 94


>sp|Q9ES82|POPD2_MOUSE Popeye domain-containing protein 2 OS=Mus
           musculus GN=Popdc2 PE=2 SV=1
          Length = 367

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 23  LPSPPSPDYAYALARRPIQERHQSNSRGQEAMHPEAEPE 139
           +P  P PD     +RRP+Q   Q  SR Q  + P   PE
Sbjct: 328 MPRMPRPDSGNLASRRPLQNSSQVMSRSQAPLAPIHTPE 366


>sp|Q61545|EWS_MOUSE RNA-binding protein EWS OS=Mus musculus
           GN=Ewsr1 PE=1 SV=1
          Length = 655

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 32  PPS--PDYAYALARRPIQERHQSNSRGQEAMHPEAEPEDASVYYEETDVQSGP 184
           PP+  P    + ++ P Q   QS+S GQ++   +  P    VY +E+   SGP
Sbjct: 236 PPTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGP 288


>sp|Q01844|EWS_HUMAN RNA-binding protein EWS OS=Homo sapiens
           GN=EWSR1 PE=1 SV=1
          Length = 656

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 32  PPS--PDYAYALARRPIQERHQSNSRGQEAMHPEAEPEDASVYYEETDVQSGP 184
           PP+  P    + ++ P Q   QS+S GQ++   +  P    VY +E+   SGP
Sbjct: 236 PPTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGP 288


>sp|P98160|PGBM_HUMAN Basement membrane-specific heparan sulfate
            proteoglycan core protein OS=Homo sapiens GN=HSPG2 PE=1
            SV=3
          Length = 4391

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
 Frame = +2

Query: 5    SKGLRSLPSPPSPDYAYALAR--RPIQERHQSNSRGQEAMHPEAEPEDASVY 154
            S  LR   S   P Y Y      RP+    Q   +G E   P  +P DA VY
Sbjct: 1693 SHSLRCQVSGSPPHYFYWSREDGRPVPSGTQQRHQGSELHFPSVQPSDAGVY 1744


>sp|Q9DB85|HUCE1_MOUSE Cerebral protein 1 homolog OS=Mus musculus
           PE=1 SV=1
          Length = 457

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 15/97 (15%)
 Frame = +2

Query: 20  SLPSPPS--PDYAYALARRPIQERHQSNSRGQEAMHPEAEPEDA--SVYYEETDV----- 172
           S PSP S  P+ ++ L+R+  + R ++  R +    P   PE A      EET+V     
Sbjct: 169 SKPSPESMSPNSSHTLSRKQWRNRQKNKRRHKNKFRPLQTPEQAPPKASIEETEVPPVPK 228

Query: 173 ------QSGPIRVEYFQNXXXXXXXXXXDDLYDGMES 265
                 ++G +R    Q           + LY G  S
Sbjct: 229 SDSQESRAGALRARMTQRLDGARFRYLNEQLYSGPSS 265


>sp|Q05793|PGBM_MOUSE Basement membrane-specific heparan sulfate
            proteoglycan core protein OS=Mus musculus GN=Hspg2 PE=1
            SV=1
          Length = 3707

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +2

Query: 29   SPPSPDYAYALARRPIQERHQSNSRGQEAMHPEAEPEDASVY 154
            SPP   Y      RP+    Q   +G E   P  +P DA VY
Sbjct: 1702 SPPHYFYWSREDGRPLPSSAQQRHQGSELHFPSVQPSDAGVY 1743


>sp|Q14444|CAPR1_HUMAN Caprin-1 OS=Homo sapiens GN=CAPRIN1 PE=1 SV=2
          Length = 709

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 77  QERHQSNSRGQEAMHPEAEPEDASVYYEETDVQS 178
           +E   +++   E   PEAEPE A  Y E+++V+S
Sbjct: 258 EEEEAASAPAVEDQVPEAEPEPAEEYTEQSEVES 291


>sp|Q16WU7|WSCD_AEDAE WSCD family member AAEL009094 OS=Aedes aegypti
           GN=AAEL009094 PE=3 SV=1
          Length = 317

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
 Frame = +2

Query: 14  LRSLPSPPSPDYAYALARR-PIQERHQSNSRGQEAMHPEAEPEDASVY-----YEETDVQ 175
           LR + SPP    AY L +  P+ + HQ +S G+E     + P   + +      + T + 
Sbjct: 69  LRYMDSPPPSPKAYKLLQTFPVNDGHQKSSNGRELTALVSFPGSGNTWLRYLLQQSTGIL 128

Query: 176 SGPIRVEY 199
           +G +  +Y
Sbjct: 129 TGSVYKDY 136
tr_hit_id A7UTV4
Definition tr|A7UTV4|A7UTV4_ANOGA AGAP005741-PA OS=Anopheles gambiae
Align length 61
Score (bit) 33.9
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920423|Adiantum capillus-veneris mRNA, clone:
YMU001_000136_H07.
         (400 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7UTV4|A7UTV4_ANOGA AGAP005741-PA OS=Anopheles gambiae GN=AGA...    34   4.1  

>tr|A7UTV4|A7UTV4_ANOGA AGAP005741-PA OS=Anopheles gambiae
           GN=AGAP005741 PE=4 SV=1
          Length = 666

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = +2

Query: 17  RSLPSPPSPDYAYALARRPIQERHQSNSRGQEAMHPEAEPEDASVYYEETDVQSGPIRVE 196
           R LP PP P       RRP    H     G E + P   P D+S+   ET  Q+ P+  +
Sbjct: 4   RPLPPPPRPTRK---PRRPDGSDHHDLDGGAERIIPLTVPNDSSIDEVETATQTDPVSED 60

Query: 197 Y 199
           +
Sbjct: 61  F 61