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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920426
Clone id YMU001_000136_H10
Library
Length 438
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000136_H10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGGTACTCGAGTACCTGCTGGGCTGGGAAATGAAGCTTTACTCATGCCAAATCTGCTATC
TTTGGGAGTGGTTCAAACCATTTGAGATCACACATCAAAGTGCTTGCTTTGGTGAAAGTG
CTCTTGTATTGGGCTCAAAGGACAGCTGGAGGTTGAATTCGAGATGTGGAGATCATCCTT
TGGCCAGTTGTTGGCCAAGAGAAAGCGCAAGGACTACCTAGTTCAGCAGATGTCAGCTCA
ATGAAAGCGATGGATGTTGACCCATGGGTCGACAACATGGCATAACTCAATTTCTGAGCC
AAAGTCTCATTTCTTGAGAGTTATGAAGTGCTACGGATTATGGTTAAAAACATCATTTGT
GATGAGTAATTAATCTGATTGCAGAGCTGGTGTTCAATGGCACTTCCAAATTGTTATTAC
CCCTTGAACTCTATTTTA
■■Homology search results ■■ -
sp_hit_id Q5H9K5
Definition sp|Q5H9K5|ZMAT1_HUMAN Zinc finger matrin-type protein 1 OS=Homo sapiens
Align length 65
Score (bit) 30.4
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920426|Adiantum capillus-veneris mRNA, clone:
YMU001_000136_H10.
         (438 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5H9K5|ZMAT1_HUMAN Zinc finger matrin-type protein 1 OS=Homo ...    30   3.4  
sp|Q3KQE5|T38BA_XENLA Trimeric intracellular cation channel type...    30   4.4  
sp|Q9HDB5|NRX3B_HUMAN Neurexin-3-beta OS=Homo sapiens GN=NRXN3 P...    30   4.4  
sp|Q9AY27|YS1_MAIZE Iron-phytosiderophore transporter yellow str...    30   5.7  
sp|O13652|SFI1_SCHPO Protein sfi1 OS=Schizosaccharomyces pombe G...    30   5.7  
sp|O13992|MUG56_SCHPO Meiotically up-regulated gene 56 protein O...    30   5.7  
sp|Q28FA9|TM38B_XENTR Trimeric intracellular cation channel type...    29   7.5  
sp|Q6GN30|T38BB_XENLA Trimeric intracellular cation channel type...    29   7.5  
sp|Q2LR98|SYY_SYNAS Tyrosyl-tRNA synthetase OS=Syntrophus acidit...    29   7.5  
sp|Q6AXJ7|CX039_DANRE Uncharacterized protein CXorf39 homolog OS...    29   9.8  

>sp|Q5H9K5|ZMAT1_HUMAN Zinc finger matrin-type protein 1 OS=Homo
           sapiens GN=ZMAT1 PE=2 SV=1
          Length = 638

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +2

Query: 164 MWRSSFGQLLAKRKRKDYLVQQMSAQ*KRWMLTHGSTTWHNSISEPKSHFLRVMKCYGLW 343
           M    F    ++  ++ Y +  + +Q  +W+ TH   T ++S  +    +++V K  GL 
Sbjct: 351 MCEQRFSHEASQTYQRPYHISPVESQLPQWLPTHSKRT-YDSFQDELEDYIKVQKARGLE 409

Query: 344 LKTSF 358
            KT F
Sbjct: 410 PKTCF 414


>sp|Q3KQE5|T38BA_XENLA Trimeric intracellular cation channel type
           B-A OS=Xenopus laevis GN=tmem38b-A PE=2 SV=1
          Length = 284

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +1

Query: 67  SGSNHLRSHIKVLALVKVLLYWAQRTAGG*IRDVEIILWPVVGQEKAQGLPSSADV 234
           SG  H  SH K   LV + + WA+   GG I + E ++  V   E  + L  S  V
Sbjct: 127 SGVTHAHSHYKDALLVMITIGWARGAGGGLISNFEQLVRGVWKPESNEFLKMSYPV 182


>sp|Q9HDB5|NRX3B_HUMAN Neurexin-3-beta OS=Homo sapiens GN=NRXN3 PE=1
           SV=4
          Length = 637

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -1

Query: 201 LLANNWPKDDLHISNSTSSCPLSPIQE--HFHQSKHFDV 91
           ++++ W   ++  S+STSS P S  Q   HFH SKH  V
Sbjct: 29  IVSSVWSSSNVASSSSTSSSPGSHSQHEHHFHGSKHHSV 67


>sp|Q9AY27|YS1_MAIZE Iron-phytosiderophore transporter yellow stripe
           1 OS=Zea mays GN=YS1 PE=2 SV=1
          Length = 682

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 70  GSNHLRSH-IKVLALVKVLLYWAQRTAGG*IRDVEIILWPVVGQEKAQGLPSSADVSSMK 246
           G+  + SH + +  L+  +L W              ILWP++ ++K +  P++   SSMK
Sbjct: 280 GAGMICSHLVNISTLLGAILSWG-------------ILWPLISKQKGEWYPANIPESSMK 326

Query: 247 AM 252
           ++
Sbjct: 327 SL 328


>sp|O13652|SFI1_SCHPO Protein sfi1 OS=Schizosaccharomyces pombe
           GN=sfi1 PE=2 SV=3
          Length = 840

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 15/60 (25%), Positives = 31/60 (51%)
 Frame = +2

Query: 116 KCSCIGLKGQLEVEFEMWRSSFGQLLAKRKRKDYLVQQMSAQ*KRWMLTHGSTTWHNSIS 295
           K S + +    + E+ + R  F   ++KR+R + L+Q+ +   +  +L H   TW  ++S
Sbjct: 266 KWSALTVNWNRKHEYMLKRRVFTNWMSKRRRNESLIQKANVFFQHSVLAHSFKTWKANLS 325


>sp|O13992|MUG56_SCHPO Meiotically up-regulated gene 56 protein
            OS=Schizosaccharomyces pombe GN=mug56 PE=1 SV=1
          Length = 965

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
 Frame = +2

Query: 98   KCLLW*KCSCIGLKGQLEVEFEMWRSSFGQLLAK-RKRKDYLVQQMSAQ*KRWMLTHGST 274
            K  L+ KC  I + GQL    +  R+ FG+L  K   RK Y +   +A    ++ T  ST
Sbjct: 811  KDALFEKCFAILIPGQLVFFQDATRTKFGKLCTKTHYRKRYSISLKNA----FIYTGLST 866

Query: 275  --TWHNSISEPKSHFLRVMKCY 334
               +    ++P+ H  R+ +CY
Sbjct: 867  MDEFARGPNDPQPHISRLPRCY 888


>sp|Q28FA9|TM38B_XENTR Trimeric intracellular cation channel type B
           OS=Xenopus tropicalis GN=tmem38b PE=2 SV=1
          Length = 284

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +1

Query: 67  SGSNHLRSHIKVLALVKVLLYWAQRTAGG*IRDVEIILWPVVGQEKAQGLPSSADV 234
           SG  H  SH K   LV + + WA+   GG I + E ++  V   E  + L  S  V
Sbjct: 127 SGVAHAHSHYKDAMLVMITIGWARGAGGGLISNFEQLVRGVWKPESNEFLKMSYPV 182


>sp|Q6GN30|T38BB_XENLA Trimeric intracellular cation channel type
           B-B OS=Xenopus laevis GN=tmem38b-B PE=2 SV=1
          Length = 284

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +1

Query: 67  SGSNHLRSHIKVLALVKVLLYWAQRTAGG*IRDVEIILWPVVGQEKAQGLPSSADV 234
           SG  H  SH K   LV + + WA+   GG I + E ++  V   E  + L  S  V
Sbjct: 127 SGITHAHSHYKDAWLVMITIGWARGAGGGLISNFEQLVRGVWKPESNEFLKMSYPV 182


>sp|Q2LR98|SYY_SYNAS Tyrosyl-tRNA synthetase OS=Syntrophus
           aciditrophicus (strain SB) GN=tyrS PE=3 SV=1
          Length = 428

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
 Frame = -2

Query: 275 LSTHGSTSIAFIELTSAELGSPCAFSWPTTGQRMISTSRIQPPAVL----*AQYKSTFTK 108
           L  HG TSIA +   +A +G P   S  T  +++++  +I+  A       A+Y S   K
Sbjct: 60  LQRHGHTSIALVGGGTALIGDP---SGKTEMRQILTREKIELNATCMRRQFARYLSFEDK 116

Query: 107 ASTLMCDLKWFEPLPKIADLA*VKLHFPAQQVL 9
            + ++ +  W   L  I+ L  +  HF   ++L
Sbjct: 117 KAMMINNADWLTKLNYISFLRDIGRHFSVNKML 149


>sp|Q6AXJ7|CX039_DANRE Uncharacterized protein CXorf39 homolog
           OS=Danio rerio GN=zgc:101060 PE=2 SV=1
          Length = 374

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 321 TLKK*DFGSEIELCHVVDPWVNIHRFH 241
           TL   DFG ++  CH  DP   +HRFH
Sbjct: 30  TLDVSDFGCQLSSCHRTDP---LHRFH 53
tr_hit_id Q0WNB7
Definition tr|Q0WNB7|Q0WNB7_ARATH Putative uncharacterized protein At3g50480 OS=Arabidopsis thaliana
Align length 61
Score (bit) 33.5
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920426|Adiantum capillus-veneris mRNA, clone:
YMU001_000136_H10.
         (438 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0WNB7|Q0WNB7_ARATH Putative uncharacterized protein At3g5048...    33   5.4  

>tr|Q0WNB7|Q0WNB7_ARATH Putative uncharacterized protein At3g50480
           OS=Arabidopsis thaliana GN=At3g50480 PE=2 SV=1
          Length = 200

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +1

Query: 91  HIKVLALVKVLLYWAQRTAGG*IRDVEIILWPVVGQEKAQGLPSSADVSSMKAMDVDPWV 270
           +IK L  +++ L W  R       ++++  W  + + KA  +    D+  MKA+ VD W 
Sbjct: 105 YIKKLESIELELVWVAR-------EIQVHQWTDIKEMKAIQVHQWTDIKEMKAIQVDQWT 157

Query: 271 D 273
           D
Sbjct: 158 D 158