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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920429
Clone id YMU001_000137_A02
Library
Length 542
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000137_A02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AAGCAGGCCAAGACGACGTTGGGAATGAGGACTTGCAGTAACATCTTATCCTTGACACAA
CCGCTTCACGAGAACTCTCCCGTGTTTCTTGGAGATAAAAGGATAACCTTGTCTTGGAAA
GAAGCTCCCAAGGCAGCCAGAACACCTCATTCAGGGGTAAAACGAGGAACTGCATGCCGA
CAATGGAATGGGAGCAACCAGTGGAGAAAAGAAAGTTCGTGTTAACGAGCCTCTTTCCCG
AGGTGGTGGCAGAGGTTTCAGAGGTGGCTGGCGGGGCAGATCAAGAGGTCGTGGTTATTA
GTACAGCATGTAGAGTTATTGCTTTTTCAGGTTGCTAGTAAGCTGCCTTTGCCAATGGAG
GGGAAGAATCCGATGGATTGAGCCGACTCTGGCTTGCCCTGCCTGTCCAGCAAAGCATGT
GAAGGCGATCTACTCGTGGAGAAAAAAGCACTCTTTGCTCTGGTAACTAGGTCTACCAGC
AAATGAGCTTTCTGAGATATAGGATTCCTTGTTAGGAGAATGTGTTGGCGTTGAAGACTC
TG
■■Homology search results ■■ -
sp_hit_id P35519
Definition sp|P35519|NEU1_ANSAN Neurophysin 1 OS=Anser anser anser
Align length 54
Score (bit) 30.0
E-value 7.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920429|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_A02.
         (542 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P35519|NEU1_ANSAN Neurophysin 1 OS=Anser anser anser PE=1 SV=1      30   7.6  
sp|Q0RAT5|POTA_FRAAA Spermidine/putrescine import ATP-binding pr...    30   9.9  
sp|Q3TMW1|C102A_MOUSE Coiled-coil domain-containing protein 102A...    30   9.9  

>sp|P35519|NEU1_ANSAN Neurophysin 1 OS=Anser anser anser PE=1 SV=1
          Length = 93

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = +1

Query: 313 ELLLFQVASKLPLPME-GKNPM--D*ADSGLP--CLSSKACEGDLLVEKKALFA 459
           E L  Q  S LP P E G+ P   D A    P  C SS+ C  D   E++ALFA
Sbjct: 40  ETLRCQEESFLPTPCESGRKPCGGDGASCAAPGICCSSEGCVADPACEREALFA 93


>sp|Q0RAT5|POTA_FRAAA Spermidine/putrescine import ATP-binding
           protein potA OS=Frankia alni (strain ACN14a) GN=potA
           PE=3 SV=1
          Length = 465

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 24/74 (32%), Positives = 35/74 (47%)
 Frame = -3

Query: 222 TRTFFSPLVAPIPLSACSSSFYP*MRCSGCLGSFFPRQGYPFISKKHGRVLVKRLCQG*D 43
           TR    P V+ + L+     F+  +  SGC  S   R    F     GR+L+    QG D
Sbjct: 41  TRGRAVPAVSRVDLAIRPGEFFSLLGPSGCGKSTTLRMIAGFEEPTRGRILL----QGRD 96

Query: 42  VTASPHSQRRLGLL 1
           VTA P ++R + L+
Sbjct: 97  VTAVPPNRRDVNLV 110


>sp|Q3TMW1|C102A_MOUSE Coiled-coil domain-containing protein 102A
           OS=Mus musculus GN=Ccdc102a PE=2 SV=2
          Length = 549

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 463 PEQRVLFSPRVDRLHMLCWTGRASQSRLNPSDSSPP 356
           P  R+  SP++ +  +L   G  S  R+ P+DS PP
Sbjct: 5   PSPRLAESPQLSKSSLLTILGSPSPERMGPADSLPP 40
tr_hit_id A7QPN4
Definition tr|A7QPN4|A7QPN4_VITVI Chromosome chr10 scaffold_138, whole genome shotgun sequence OS=Vitis vinifera
Align length 44
Score (bit) 67.8
E-value 4.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920429|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_A02.
         (542 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QPN4|A7QPN4_VITVI Chromosome chr10 scaffold_138, whole geno...    68   4e-10
tr|O22957|O22957_ARATH Expressed protein (At2g34040) (Putative u...    65   3e-09
tr|A7P1V9|A7P1V9_VITVI Chromosome chr19 scaffold_4, whole genome...    62   1e-08
tr|Q6Z6S1|Q6Z6S1_ORYSJ Putative fibroblast growth factor 2-inter...    61   4e-08
tr|Q0E1R8|Q0E1R8_ORYSJ Os02g0313400 protein (Fragment) OS=Oryza ...    61   4e-08
tr|A2X3Z4|A2X3Z4_ORYSI Putative uncharacterized protein OS=Oryza...    61   4e-08
tr|Q9SHR1|Q9SHR1_ARATH F1K23.1 OS=Arabidopsis thaliana PE=4 SV=2       58   3e-07
tr|Q8GXH2|Q8GXH2_ARATH Putative uncharacterized protein At1g2903...    58   3e-07
tr|A7QPN1|A7QPN1_VITVI Chromosome chr10 scaffold_138, whole geno...    54   5e-06
tr|Q9LT65|Q9LT65_ARATH Gb|AAB67622.1 OS=Arabidopsis thaliana PE=...    46   0.001
tr|Q680X1|Q680X1_ARATH Putative uncharacterized protein At3g1951...    46   0.001
tr|B7YGQ8|B7YGQ8_VARPD Putative carbohydrate binding OS=Variovor...    34   4.4  
tr|B5S9K8|B5S9K8_RALSO Putative uncharacterized protein OS=Ralst...    34   4.4  
tr|B6MT14|B6MT14_BRAFL Putative uncharacterized protein OS=Branc...    34   4.4  
tr|Q03SD9|Q03SD9_LACBA ABC-type polysaccharide/polyol phosphate ...    34   5.7  
tr|B5SAA5|B5SAA5_RALSO Putative uncharacterized protein OS=Ralst...    34   5.7  
tr|A3RYP5|A3RYP5_RALSO Transcriptional regulators, LysR family O...    34   5.7  

>tr|A7QPN4|A7QPN4_VITVI Chromosome chr10 scaffold_138, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00003009001
           PE=4 SV=1
          Length = 550

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 29/44 (65%), Positives = 36/44 (81%)
 Frame = +1

Query: 1   KQAKTTLGMRTCSNILSLTQPLHENSPVFLGDKRITLSWKEAPK 132
           ++  TT G+RTC+NIL++TQPLH  SP F+GDKRI LSWKEA K
Sbjct: 434 QKQNTTTGLRTCNNILAMTQPLHSKSPSFIGDKRINLSWKEATK 477


>tr|O22957|O22957_ARATH Expressed protein (At2g34040) (Putative
           uncharacterized protein) OS=Arabidopsis thaliana
           GN=At2g34040 PE=2 SV=2
          Length = 553

 Score = 64.7 bits (156), Expect = 3e-09
 Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
 Frame = +1

Query: 1   KQAKTTLGMRTCSNILSLTQPLHENSPVFLGDKRITLSWKEA--PKAARTPHSGVKRGTA 174
           K+  TT G+RTC+NIL++T+PLH   P F+GD  + LSWKEA  P A+ T   G KR   
Sbjct: 433 KRQNTTTGLRTCNNILAMTKPLHAKVPPFIGDTNLNLSWKEATKPLASTTTTIGGKRPAN 492

Query: 175 CRQWNGSN 198
               +G+N
Sbjct: 493 SNNGSGNN 500


>tr|A7P1V9|A7P1V9_VITVI Chromosome chr19 scaffold_4, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00027771001
           PE=4 SV=1
          Length = 564

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 29/51 (56%), Positives = 38/51 (74%), Gaps = 3/51 (5%)
 Frame = +1

Query: 22  GMRTCSNILSLTQPLHENSPVFLGDKRITLSWKEAPKAARTP---HSGVKR 165
           G+RTC+NIL++TQPLH  SP F+GD++I LSWK+A K +  P    SG KR
Sbjct: 441 GLRTCNNILAMTQPLHSKSPSFIGDQKINLSWKKAAKPSAPPTAASSGGKR 491


>tr|Q6Z6S1|Q6Z6S1_ORYSJ Putative fibroblast growth factor
           2-interacting factor (Putative uncharacterized protein)
           OS=Oryza sativa subsp. japonica GN=P0705A04.11 PE=4 SV=1
          Length = 537

 Score = 60.8 bits (146), Expect = 4e-08
 Identities = 29/62 (46%), Positives = 38/62 (61%)
 Frame = +1

Query: 4   QAKTTLGMRTCSNILSLTQPLHENSPVFLGDKRITLSWKEAPKAARTPHSGVKRGTACRQ 183
           Q K+T+ MR  +NIL++ QPL   SP+F+GDK+ITLSW E PK      +G KR      
Sbjct: 428 QQKSTMTMRAYNNILAMAQPLRAKSPLFIGDKKITLSWMEQPKKPAPTTTGGKRSQPATN 487

Query: 184 WN 189
            N
Sbjct: 488 GN 489


>tr|Q0E1R8|Q0E1R8_ORYSJ Os02g0313400 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os02g0313400 PE=4 SV=1
          Length = 271

 Score = 60.8 bits (146), Expect = 4e-08
 Identities = 29/62 (46%), Positives = 38/62 (61%)
 Frame = +1

Query: 4   QAKTTLGMRTCSNILSLTQPLHENSPVFLGDKRITLSWKEAPKAARTPHSGVKRGTACRQ 183
           Q K+T+ MR  +NIL++ QPL   SP+F+GDK+ITLSW E PK      +G KR      
Sbjct: 162 QQKSTMTMRAYNNILAMAQPLRAKSPLFIGDKKITLSWMEQPKKPAPTTTGGKRSQPATN 221

Query: 184 WN 189
            N
Sbjct: 222 GN 223


>tr|A2X3Z4|A2X3Z4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_06927 PE=4 SV=1
          Length = 537

 Score = 60.8 bits (146), Expect = 4e-08
 Identities = 29/62 (46%), Positives = 38/62 (61%)
 Frame = +1

Query: 4   QAKTTLGMRTCSNILSLTQPLHENSPVFLGDKRITLSWKEAPKAARTPHSGVKRGTACRQ 183
           Q K+T+ MR  +NIL++ QPL   SP+F+GDK+ITLSW E PK      +G KR      
Sbjct: 428 QQKSTMTMRAYNNILAMAQPLRAKSPLFIGDKKITLSWMEQPKKPAPTTTGGKRSQPATN 487

Query: 184 WN 189
            N
Sbjct: 488 GN 489


>tr|Q9SHR1|Q9SHR1_ARATH F1K23.1 OS=Arabidopsis thaliana PE=4 SV=2
          Length = 347

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 28/72 (38%), Positives = 42/72 (58%)
 Frame = +1

Query: 1   KQAKTTLGMRTCSNILSLTQPLHENSPVFLGDKRITLSWKEAPKAARTPHSGVKRGTACR 180
           K+  TT G+RTC+NIL++T+ LH  +P F+G+  +TLSWKE  K  +   S    G    
Sbjct: 224 KKQSTTTGLRTCNNILAMTKGLHAKAPSFIGNTSVTLSWKEPTKVTKPLASTTTGGKRPA 283

Query: 181 QWNGSNQWRKES 216
              G+N   K++
Sbjct: 284 NGAGNNVGAKKA 295


>tr|Q8GXH2|Q8GXH2_ARATH Putative uncharacterized protein
           At1g29030/F28N24_25 (Putative uncharacterized protein
           At1g29030) OS=Arabidopsis thaliana
           GN=At1g29030/F28N24_25 PE=2 SV=1
          Length = 556

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 28/72 (38%), Positives = 42/72 (58%)
 Frame = +1

Query: 1   KQAKTTLGMRTCSNILSLTQPLHENSPVFLGDKRITLSWKEAPKAARTPHSGVKRGTACR 180
           K+  TT G+RTC+NIL++T+ LH  +P F+G+  +TLSWKE  K  +   S    G    
Sbjct: 433 KKQSTTTGLRTCNNILAMTKGLHAKAPSFIGNTSVTLSWKEPTKVTKPLASTTTGGKRPA 492

Query: 181 QWNGSNQWRKES 216
              G+N   K++
Sbjct: 493 NGAGNNVGAKKA 504


>tr|A7QPN1|A7QPN1_VITVI Chromosome chr10 scaffold_138, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00003005001
           PE=4 SV=1
          Length = 53

 Score = 53.9 bits (128), Expect = 5e-06
 Identities = 24/34 (70%), Positives = 28/34 (82%)
 Frame = +1

Query: 31  TCSNILSLTQPLHENSPVFLGDKRITLSWKEAPK 132
           TC+NIL++TQPLH  SP F+GDKRI LS KEA K
Sbjct: 12  TCNNILAMTQPLHSKSPSFIGDKRINLSCKEATK 45


>tr|Q9LT65|Q9LT65_ARATH Gb|AAB67622.1 OS=Arabidopsis thaliana PE=4
           SV=1
          Length = 976

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = +1

Query: 1   KQAKTTLGMRTCSNILSLTQPLHENSPVFLGDKRIT-LSWKEAPK 132
           K+  T   +RTC NIL++T+ LH   P F+GD  +  LSWKEA K
Sbjct: 280 KRQDTKTELRTCINILAMTEVLHAEVPSFIGDTNVVKLSWKEATK 324