BP920432
Clone id YMU001_000137_A06
Library
Length 513
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000137_A06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AGATACATATTTACACAACAGTATTCATTCTGCAAGTCAGTAAAGTTTTGACTTCATGAA
AGCTAAGAACGCCTACCTCTGTTGTTACATTTCATTTGTTGTGCTCTGACCTACAAATAA
CCTGCAAAAGATACAACTACAATGGGAAACAGCTACGATTTGGTCCTGCAGAACAACATG
TTAAAGGCCATCTCGAACGGAGTTGCATCCTGCTGACTGGCTCCCACTAAACAAAATCCT
GCAGGTAGCCTGCGCCAAATAGAATTAATGCTTCCACCCGCTTTAGTATCGCCCATTTGC
ATCTTCATATTCTCCAGAGTGCCTTGCTTCACGTTCTCTGTTCCACTGCTCTATCTTTGC
TCTGCGTCCAGCACTCCCTTCCCTGATGGGGCTTCGATCTCTATGCCTTGGTGAGCTTCT
GTGTCGGCTTGAAGGACTATAACCTCTGTTTGAACCTCTTGAATGTGATCTCCAATCATC
ATAATCTCCATATTCATGAGCATACCTTGAATG
■■Homology search results ■■ -
sp_hit_id Q9ZQW8
Definition sp|Q9ZQW8|U2AFA_ORYSJ Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica
Align length 19
Score (bit) 35.0
E-value 0.21
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920432|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_A06.
(513 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9ZQW8|U2AFA_ORYSJ Splicing factor U2af small subunit A OS=Or... 35 0.21
sp|Q6AUG0|U2AFB_ORYSJ Splicing factor U2af small subunit B OS=Or... 34 0.35
sp|P15305|DYHC_ONCMY Dynein heavy chain (Fragment) OS=Oncorhynch... 30 6.5

>sp|Q9ZQW8|U2AFA_ORYSJ Splicing factor U2af small subunit A OS=Oryza
sativa subsp. japonica GN=U2AF35A PE=2 SV=1
Length = 290

Score = 35.0 bits (79), Expect = 0.21
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -1

Query: 381 EGSAGRRAKIEQWNREREA 325
+GS RRA+IEQWNREREA
Sbjct: 269 DGSEERRAQIEQWNREREA 287


>sp|Q6AUG0|U2AFB_ORYSJ Splicing factor U2af small subunit B OS=Oryza
sativa subsp. japonica GN=U2AF35B PE=2 SV=1
Length = 304

Score = 34.3 bits (77), Expect = 0.35
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = -1

Query: 381 EGSAGRRAKIEQWNREREAR 322
E S RRAKIEQWNRERE +
Sbjct: 284 ESSEERRAKIEQWNREREEK 303


>sp|P15305|DYHC_ONCMY Dynein heavy chain (Fragment) OS=Oncorhynchus
mykiss PE=2 SV=1
Length = 515

Score = 30.0 bits (66), Expect = 6.5
Identities = 16/85 (18%), Positives = 46/85 (54%)
Frame = +3

Query: 258 NRINASTRFSIAHLHLHILQSALLHVLCSTALSLLCVQHSLP*WGFDLYALVSFCVGLKD 437
N I ST I + LH++Q ++LHV+ S+ +Q+S+ + + ++ + + +
Sbjct: 73 NVIQYSTLHVIQYSTLHVIQYSILHVI---QYSIHVIQYSIHVTQYSILHVIQYSIHVIQ 129

Query: 438 YNLCLNLLNVISNHHNLHIHEHTLN 512
Y++ + + +++H+ +++++
Sbjct: 130 YSIHVIQYSTHVIQYSIHVIQYSIH 154


tr_hit_id Q2QKB5
Definition tr|Q2QKB5|Q2QKB5_WHEAT U2AF small subunit OS=Triticum aestivum
Align length 58
Score (bit) 48.1
E-value 0.0003
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920432|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_A06.
(513 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q2QKB5|Q2QKB5_WHEAT U2AF small subunit OS=Triticum aestivum P... 48 3e-04
tr|A9TES1|A9TES1_PHYPA Predicted protein OS=Physcomitrella paten... 42 0.014
tr|A9NVR9|A9NVR9_PICSI Putative uncharacterized protein OS=Picea... 40 0.068
tr|A9RKV0|A9RKV0_PHYPA Predicted protein (Fragment) OS=Physcomit... 39 0.20
tr|A7PPK3|A7PPK3_VITVI Chromosome chr8 scaffold_23, whole genome... 39 0.20
tr|B8LNG3|B8LNG3_PICSI Putative uncharacterized protein OS=Picea... 38 0.26
tr|Q9S709|Q9S709_ARATH T22C5.10 (At1g27650/T22C5_2) (Putative U2... 38 0.34
tr|Q945S1|Q945S1_ARATH U2 auxiliary factor small subunit OS=Arab... 38 0.34
tr|B6T7D3|B6T7D3_MAIZE Splicing factor U2af 38 kDa subunit OS=Ze... 38 0.34
tr|B4FQ72|B4FQ72_MAIZE Putative uncharacterized protein OS=Zea m... 38 0.34
tr|A8MRI1|A8MRI1_ARATH Uncharacterized protein At1g27650.2 OS=Ar... 38 0.34
tr|B7E7L8|B7E7L8_ORYSJ cDNA clone:001-044-E06, full insert seque... 35 2.2
tr|B6TX31|B6TX31_MAIZE Putative uncharacterized protein OS=Zea m... 35 2.2
tr|B6T3Q5|B6T3Q5_MAIZE Splicing factor U2af 38 kDa subunit OS=Ze... 35 2.2
tr|A2Z2M2|A2Z2M2_ORYSI Putative uncharacterized protein OS=Oryza... 35 2.2
tr|B6TRJ7|B6TRJ7_MAIZE Splicing factor U2af 38 kDa subunit OS=Ze... 35 2.9
tr|B6TCE1|B6TCE1_MAIZE Splicing factor U2af 38 kDa subunit OS=Ze... 35 2.9
tr|B6SY08|B6SY08_MAIZE Splicing factor U2af 38 kDa subunit OS=Ze... 35 2.9
tr|B4FAF4|B4FAF4_MAIZE Putative uncharacterized protein OS=Zea m... 35 2.9
tr|Q5XH71|Q5XH71_XENLA LOC495052 protein OS=Xenopus laevis GN=LO... 34 3.7
tr|B7EHH7|B7EHH7_ORYSJ cDNA clone:001-039-A01, full insert seque... 34 3.7
tr|Q4X2I8|Q4X2I8_PLACH U2 snRNP auxiliary factor, small subunit,... 34 3.7
tr|Q5U5C1|Q5U5C1_XENLA LOC495304 protein OS=Xenopus laevis GN=LO... 34 4.8
tr|Q9FMY5|Q9FMY5_ARATH U2 snRNP auxiliary factor, small subunit ... 34 4.9
tr|Q945S0|Q945S0_ARATH U2 auxiliary factor small subunit OS=Arab... 34 4.9
tr|A7QPI3|A7QPI3_VITVI Chromosome chr18 scaffold_137, whole geno... 34 4.9
tr|B7FFR4|B7FFR4_MEDTR Putative uncharacterized protein (Fragmen... 33 6.4
tr|Q6PBC7|Q6PBC7_XENTR Inhibitor of growth family, member 5 OS=X... 33 8.1
tr|O36421|O36421_9GAMA Putative immediate early protein OS=Alcel... 33 8.1
tr|B8CV00|B8CV00_9GAMM Putative uncharacterized protein OS=Shewa... 33 8.1

>tr|Q2QKB5|Q2QKB5_WHEAT U2AF small subunit OS=Triticum aestivum PE=2
SV=1
Length = 314

Score = 48.1 bits (113), Expect = 3e-04
Identities = 29/58 (50%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = -1

Query: 489 GDYDDWRSHSRGS---NRGYXXXXXXXXXXXXXXXXXXREGSAGRRAKIEQWNREREA 325
GDY D+ HSR S NR Y REGS RRAKIEQWNREREA
Sbjct: 232 GDYGDYYHHSRRSSERNRNYDSDGSRCRRHRSRTRSPVREGSEERRAKIEQWNREREA 289



Score = 33.9 bits (76), Expect = 4.9
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -1

Query: 381 EGSAGRRAKIEQWNRERE 328
+GS RRAKI+QWNRERE
Sbjct: 293 QGSEERRAKIDQWNRERE 310


>tr|A9TES1|A9TES1_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_194373 PE=4 SV=1
Length = 304

Score = 42.4 bits (98), Expect = 0.014
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = -1

Query: 381 EGSAGRRAKIEQWNREREARHSGE 310
EGSA RRAKIEQWNRERE R + E
Sbjct: 263 EGSAERRAKIEQWNREREVRQAAE 286


>tr|A9NVR9|A9NVR9_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 312

Score = 40.0 bits (92), Expect = 0.068
Identities = 22/43 (51%), Positives = 25/43 (58%), Gaps = 11/43 (25%)
Frame = -1

Query: 381 EGSAGRRAKIEQWNREREARHS-----------GEYEDANGRY 286
EGSA RRAKIEQWNRE+EA+ S G Y + G Y
Sbjct: 268 EGSAERRAKIEQWNREKEAQASSTIANHPMQNGGAYSNPQGYY 310


>tr|A9RKV0|A9RKV0_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_25638 PE=4 SV=1
Length = 283

Score = 38.5 bits (88), Expect = 0.20
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = -1

Query: 381 EGSAGRRAKIEQWNREREAR 322
EGSA RRAKI+QWNRERE R
Sbjct: 263 EGSAERRAKIDQWNREREER 282


>tr|A7PPK3|A7PPK3_VITVI Chromosome chr8 scaffold_23, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00021681001
PE=4 SV=1
Length = 317

Score = 38.5 bits (88), Expect = 0.20
Identities = 18/27 (66%), Positives = 19/27 (70%)
Frame = -1

Query: 381 EGSAGRRAKIEQWNREREARHSGEYED 301
EGSA RRAKIEQWNRERE + D
Sbjct: 250 EGSAERRAKIEQWNREREQAEATNKND 276


>tr|B8LNG3|B8LNG3_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 344

Score = 38.1 bits (87), Expect = 0.26
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = -1

Query: 381 EGSAGRRAKIEQWNRERE 328
EGSA RRAKIEQWNRERE
Sbjct: 296 EGSAERRAKIEQWNRERE 313


>tr|Q9S709|Q9S709_ARATH T22C5.10 (At1g27650/T22C5_2) (Putative U2
snRNP auxiliary factor protein) (T17H3.14 protein)
OS=Arabidopsis thaliana GN=T17H3.14 PE=2 SV=1
Length = 296

Score = 37.7 bits (86), Expect = 0.34
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = -1

Query: 381 EGSAGRRAKIEQWNREREARHSG 313
EGS RRA+IEQWNRERE + G
Sbjct: 272 EGSEERRARIEQWNREREEKEEG 294


>tr|Q945S1|Q945S1_ARATH U2 auxiliary factor small subunit
OS=Arabidopsis thaliana GN=AUSA PE=2 SV=1
Length = 296

Score = 37.7 bits (86), Expect = 0.34
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = -1

Query: 381 EGSAGRRAKIEQWNREREARHSG 313
EGS RRA+IEQWNRERE + G
Sbjct: 272 EGSEERRARIEQWNREREEKEEG 294


>tr|B6T7D3|B6T7D3_MAIZE Splicing factor U2af 38 kDa subunit OS=Zea
mays PE=2 SV=1
Length = 284

Score = 37.7 bits (86), Expect = 0.34
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = -1

Query: 381 EGSAGRRAKIEQWNREREA 325
EGS RRAKIEQWNREREA
Sbjct: 263 EGSEERRAKIEQWNREREA 281


>tr|B4FQ72|B4FQ72_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 287

Score = 37.7 bits (86), Expect = 0.34
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = -1

Query: 381 EGSAGRRAKIEQWNREREA 325
EGS RRAKIEQWNREREA
Sbjct: 266 EGSEERRAKIEQWNREREA 284