BP920436
Clone id YMU001_000137_A11
Library
Length 588
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000137_A11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CCTCAGAACTTTGAGGGACAAACGTGGAGGAAATATGATGCACTTCTGGAAACAAGGATG
AGGGTGAACAAGCCACAAGGTGGAAGCTATGGAATCTGTAGAAAATGTCTTGCTGAAGTA
CTGCCAGAGGAGTACTAGGATGATAGAGAGCAAATTGTGGAATCATGTGGAAAGAGAAAT
TGCTACAGGCAGACCTGCTGGAGAAAATCTACCCCATCCCAAAGAAGATAGTAAACTTGA
ACAGAAAAGGCAAAAAGAAATACAAACTACAAAAGGCCCCTCAGCCAAAAGATTGACTAT
GCTTTGAAGGGGCACTGCCCAGTGGGTTAGACAATGTGGCTTTAGTCAGAGACTGAGAAA
TGGCATAGAATAAGCAGGAATACACGGCAGCAAACACGATGTAGCACTTCAGCATACAAG
TGGGCTATGCAAATGGCACAGTAAGCTGCGAGAAAGAAGAGCAACAGAGGCAGCAACCAC
ACACCCACATCTTGAACAAGGGACAGTTCGAGACAAACACAAGCGTGCGCGCGTGCGCGC
ACACACACTGAAGCCAATTCGCGGCCGCGAATTCTTCCAGTTGAGTAC
■■Homology search results ■■ -
sp_hit_id Q62000
Definition sp|Q62000|MIME_MOUSE Mimecan OS=Mus musculus
Align length 73
Score (bit) 31.2
E-value 3.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920436|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_A11.
(556 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q62000|MIME_MOUSE Mimecan OS=Mus musculus GN=Ogn PE=2 SV=1 31 3.6
sp|Q54TK0|NED81_DICDI NEDD8-like protein 1 OS=Dictyostelium disc... 31 4.7
sp|Q38890|GUN25_ARATH Endoglucanase 25 OS=Arabidopsis thaliana G... 30 6.0
sp|P35055|HEM6_SOYBN Coproporphyrinogen III oxidase, chloroplast... 30 7.9
sp|Q5V5N9|SYE_HALMA Glutamyl-tRNA synthetase OS=Haloarcula maris... 30 8.0

>sp|Q62000|MIME_MOUSE Mimecan OS=Mus musculus GN=Ogn PE=2 SV=1
Length = 298

Score = 31.2 bits (69), Expect = 3.6
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +2

Query: 89 MESVEN--VLLKYCQRSTRMIESKLWNHVEREIATGRPAGENLPHPKEDSKLEQKRQKEI 262
ME+V + +LL + + + +S+L +HV E ATG ED L+ K KE
Sbjct: 1 METVHSTFLLLLFVPLTQQAPQSQLDSHVNYEYATGNSEETKFSQDYEDKYLDGKSIKEK 60

Query: 263 QTTKGPSAKRLTM 301
+T P K L +
Sbjct: 61 ETMIIPDEKSLQL 73


>sp|Q54TK0|NED81_DICDI NEDD8-like protein 1 OS=Dictyostelium
discoideum GN=nedd8l1 PE=3 SV=1
Length = 96

Score = 30.8 bits (68), Expect = 4.7
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2

Query: 380 IHGSKHDVALQHTSGLCKWHSKLRERRATEAATTHPHLEQGTVRD 514
IHG ++D+ +Q T + + SK+ E T HP++ ++D
Sbjct: 7 IHGQEYDLEVQPTDKIQEIKSKINELNGTPVEQIHPYIAGHAMKD 51


>sp|Q38890|GUN25_ARATH Endoglucanase 25 OS=Arabidopsis thaliana
GN=KOR PE=1 SV=1
Length = 621

Score = 30.4 bits (67), Expect = 6.0
Identities = 23/59 (38%), Positives = 27/59 (45%)
Frame = +3

Query: 216 IPKKIVNLNRKGKKKYKLQKAPQPKD*LCFEGALPSGLDNVALVRD*EMA*NKQEYTAA 392
IPK V N KG K++ K P P EGA+ +G D RD M N E T A
Sbjct: 519 IPKNKVKYNCKGGWKWRDSKKPNPN---TIEGAMVAGPDKRDGYRDVRMNYNYTEPTLA 574


>sp|P35055|HEM6_SOYBN Coproporphyrinogen III oxidase, chloroplastic
OS=Glycine max GN=CPX PE=2 SV=1
Length = 385

Score = 30.0 bits (66), Expect = 7.9
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3

Query: 411 SIQVGYANGTVSCEKEEQQRQQPHTHILNKGQFETNTSVRA 533
S+ G TVS EKE + +P T + + +++TSVRA
Sbjct: 41 SMAKGPVRATVSIEKETPEANRPETFLRGVDEAQSSTSVRA 81


>sp|Q5V5N9|SYE_HALMA Glutamyl-tRNA synthetase OS=Haloarcula
marismortui GN=gltX PE=3 SV=1
Length = 579

Score = 30.0 bits (66), Expect = 8.0
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = +2

Query: 167 VEREIATGRPAGENLPHPKEDSKLEQKRQKEIQTTKGPSAKRLTML*RGTAQWVRQCGFS 346
VER+I G AGE HP E++ ++EI T G + + G W++ G
Sbjct: 435 VERQIVGGPDAGEPPLHP----DYEERGRREIPVTSGVVVEGDDLPDHGDRIWLKGYGCV 490

Query: 347 QRLRNGIE*AG 379
+ R+ E G
Sbjct: 491 RHTRDAFEYTG 501


tr_hit_id B8BU83
Definition tr|B8BU83|B8BU83_THAPS Predicted protein OS=Thalassiosira pseudonana CCMP1335
Align length 102
Score (bit) 33.9
E-value 6.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920436|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_A11.
(556 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B8BU83|B8BU83_THAPS Predicted protein OS=Thalassiosira pseudo... 34 6.1
tr|A8X9E2|A8X9E2_CAEBR CBR-LET-418 protein OS=Caenorhabditis bri... 34 6.1
tr|Q4S0D3|Q4S0D3_TETNG Chromosome 2 SCAF14781, whole genome shot... 33 7.9
tr|Q6EU58|Q6EU58_ORYSJ Os02g0536400 protein OS=Oryza sativa subs... 33 7.9
tr|B8AJ33|B8AJ33_ORYSI Putative uncharacterized protein OS=Oryza... 33 7.9
tr|A3A7P1|A3A7P1_ORYSJ Putative uncharacterized protein OS=Oryza... 33 7.9
tr|Q09QM8|Q09QM8_9ARAC Elongation factor-1 gamma (Fragment) OS=L... 33 7.9

>tr|B8BU83|B8BU83_THAPS Predicted protein OS=Thalassiosira
pseudonana CCMP1335 GN=THAPSDRAFT_2392 PE=4 SV=1
Length = 360

Score = 33.9 bits (76), Expect = 6.1
Identities = 20/102 (19%), Positives = 47/102 (46%)
Frame = +2

Query: 92 ESVENVLLKYCQRSTRMIESKLWNHVEREIATGRPAGENLPHPKEDSKLEQKRQKEIQTT 271
E + + K+ R ++++S + R I T + A ++ + + K+ K+++
Sbjct: 66 EKLRHTSTKHLHREAKVVKSFECQKIVRAIKTAKEAVDSQQTQQIRGDVNDKKAKKLKEN 125

Query: 272 KGPSAKRLTML*RGTAQWVRQCGFSQRLRNGIE*AGIHGSKH 397
+ K+L L + +W ++ ++ G++ GIH KH
Sbjct: 126 SAKALKKLKTLEK-KLEWTKKFDLDVLVQVGLKRLGIHALKH 166


>tr|A8X9E2|A8X9E2_CAEBR CBR-LET-418 protein OS=Caenorhabditis
briggsae GN=Cbr-let-418 PE=4 SV=2
Length = 1863

Score = 33.9 bits (76), Expect = 6.1
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +2

Query: 101 ENVLLKYCQRSTRMIESKLWNHVEREIATGRPAGENLPHPKEDSKLEQKRQK 256
E ++KY Q RM+ + +V++ IA R A + LP +E+S+ +KR+K
Sbjct: 533 EEAIIKYWQHRERMLNDDVPKNVQKMIAKHREA-KGLPPKEEESRRPKKREK 583


>tr|Q4S0D3|Q4S0D3_TETNG Chromosome 2 SCAF14781, whole genome shotgun
sequence. (Fragment) OS=Tetraodon nigroviridis
GN=GSTENG00026075001 PE=4 SV=1
Length = 1731

Score = 33.5 bits (75), Expect = 7.9
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = -2

Query: 186 VAISLST*FHNLLSIILVLLWQYFSKTFSTDSIASTLWL 70
V++ LS HN LSIIL +L F TF T SI+S L+L
Sbjct: 811 VSVDLSACQHNYLSIILYILMTSFILTFFTLSISSHLFL 849


>tr|Q6EU58|Q6EU58_ORYSJ Os02g0536400 protein OS=Oryza sativa subsp.
japonica GN=OJ1112_G07.30 PE=2 SV=1
Length = 656

Score = 33.5 bits (75), Expect = 7.9
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 6/141 (4%)
Frame = +1

Query: 145 REQIVESCGKRNCYRQTCWRKSTPSQRR**T*TEKAKR--NTNYKRPLSQKIDYALKGHC 318
R+ C K+ R WR + Q + + KR + + KR ++D ++ H
Sbjct: 274 RQPDTRDCSKKTDDRFEAWRDALSRQEKG---MVRLKRFGSPSRKRTEEFRVDKVVETHR 330

Query: 319 PVG*TMWL*SE-TEKWHR---ISRNTRQQTRCSTSAYKWXXXXXXXXXRKKSNRGSNHTP 486
V S+ T HR +SR ++ TRCS S + R K +RGS+
Sbjct: 331 MVQDGRKQFSDRTSHAHRLSNVSREDKRHTRCSESIPQ-TPKESRKRSRSKRSRGSS--- 386

Query: 487 TS*TRDSSRQTQACARARTHT 549
S R +S T C+R+R H+
Sbjct: 387 LSSDRSTSHSTSKCSRSRAHS 407


>tr|B8AJ33|B8AJ33_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_07547 PE=4 SV=1
Length = 651

Score = 33.5 bits (75), Expect = 7.9
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 6/141 (4%)
Frame = +1

Query: 145 REQIVESCGKRNCYRQTCWRKSTPSQRR**T*TEKAKR--NTNYKRPLSQKIDYALKGHC 318
R+ C K+ R WR + Q + + KR + + KR ++D ++ H
Sbjct: 269 RQPDTRDCSKKTDDRFEAWRDALSRQEKG---MVRLKRFGSPSRKRTEEFRVDKVVETHR 325

Query: 319 PVG*TMWL*SE-TEKWHR---ISRNTRQQTRCSTSAYKWXXXXXXXXXRKKSNRGSNHTP 486
V S+ T HR +SR ++ TRCS S + R K +RGS+
Sbjct: 326 MVQDGRKQFSDRTSHAHRLSNVSREDKRHTRCSESIPQ-TPKESRKRSRSKRSRGSS--- 381

Query: 487 TS*TRDSSRQTQACARARTHT 549
S R +S T C+R+R H+
Sbjct: 382 LSSDRSTSHSTSKCSRSRAHS 402


>tr|A3A7P1|A3A7P1_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_006813 PE=4 SV=1
Length = 654

Score = 33.5 bits (75), Expect = 7.9
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 6/141 (4%)
Frame = +1

Query: 145 REQIVESCGKRNCYRQTCWRKSTPSQRR**T*TEKAKR--NTNYKRPLSQKIDYALKGHC 318
R+ C K+ R WR + Q + + KR + + KR ++D ++ H
Sbjct: 274 RQPDTRDCSKKTDDRFEAWRDALSRQEKG---MVRLKRFGSPSRKRTEEFRVDKVVETHR 330

Query: 319 PVG*TMWL*SE-TEKWHR---ISRNTRQQTRCSTSAYKWXXXXXXXXXRKKSNRGSNHTP 486
V S+ T HR +SR ++ TRCS S + R K +RGS+
Sbjct: 331 MVQDGRKQFSDRTSHAHRLSNVSREDKRHTRCSESIPQ-TPKESRKRSRSKRSRGSS--- 386

Query: 487 TS*TRDSSRQTQACARARTHT 549
S R +S T C+R+R H+
Sbjct: 387 LSSDRSTSHSTSKCSRSRAHS 407


>tr|Q09QM8|Q09QM8_9ARAC Elongation factor-1 gamma (Fragment)
OS=Latrodectus hesperus PE=2 SV=1
Length = 396

Score = 33.5 bits (75), Expect = 7.9
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +2

Query: 113 LKYCQRSTRMIESKLWNHVEREIATGRPAGENLPHPKEDSK-LEQKRQKEIQTTKGPSAK 289
++ C++ + ++K + +++E++ G+P+ PKED K EQK +KE + P
Sbjct: 179 IELCEKMAQF-DAKKYAEIQKELSQGKPSKPKEEKPKEDKKKKEQKPKKEESPAEEPDET 237

Query: 290 RLTM 301
L +
Sbjct: 238 ELAL 241