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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920441
Clone id YMU001_000137_B06
Library
Length 465
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000137_B06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACAGCCCAGAGCTTGTCCAAACAGGGTCGTATTGAGCTTCTGAGATTGTCCAGTTCATGG
CACTGTATCAACAGGTGCGTAAGTGACCTTGAACCTTCTTCCATTCCGCACAACGGGCAA
GTCCTCGACTGTGCCCGTTCAATCTTATCCTTAAGCATTAAGCCATCCACTCTTGCTAAT
AACAAGACTTTCTCCTTCATCCCACCGGGGTTCTTCCCGATGCTCTGCCTAAAGAGGTAT
CCACGCGTAGTCCTCATACTTCCTCTCGATATAAGGATCAAGGGAGACACATTGATGTGA
ATGTTCCCAAAGCTTCCAGCTCTCCTGTCTTGCGGTTTCAACAGAAGCGCCGTTGATATA
CCTCTCCCCCCAAAACTTTGTCCTTATACACCAAGTCCACTTCTTGAATTGGTTCCAGTC
TGGTATATTGTTAACCAAATCTGCAATCCAAGTCTTTAGACCTGC
■■Homology search results ■■ -
sp_hit_id A9WLY4
Definition sp|A9WLY4|SYC_RENSM Cysteinyl-tRNA synthetase OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589)
Align length 81
Score (bit) 33.1
E-value 0.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920441|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_B06.
         (465 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A9WLY4|SYC_RENSM Cysteinyl-tRNA synthetase OS=Renibacterium s...    33   0.60 
sp|Q8TGN9|YG031_YEAST Uncharacterized protein YGR031C-A OS=Sacch...    32   1.1  
sp|Q7XR91|COBL7_ORYSJ COBRA-like protein 7 OS=Oryza sativa subsp...    32   1.8  
sp|Q5XHZ2|SYCE1_RAT Synaptonemal complex central element protein...    31   3.0  
sp|P25298|RNA14_YEAST mRNA 3'-end-processing protein RNA14 OS=Sa...    30   3.9  
sp|Q24742|TRX_DROVI Histone-lysine N-methyltransferase trithorax...    30   4.0  
sp|P33527|MRP1_HUMAN Multidrug resistance-associated protein 1 O...    30   5.1  
sp|Q5F364|MRP1_CHICK Multidrug resistance-associated protein 1 O...    30   5.1  
sp|Q864R9|MRP1_MACFA Multidrug resistance-associated protein 1 O...    30   6.7  
sp|Q6UR05|MRP1_CANFA Multidrug resistance-associated protein 1 O...    30   6.7  
sp|Q8HXQ5|MRP1_BOVIN Multidrug resistance-associated protein 1 O...    30   6.7  
sp|Q97KE6|ASSY_CLOAB Argininosuccinate synthase OS=Clostridium a...    30   6.8  
sp|Q8U1C4|SYP_PYRFU Prolyl-tRNA synthetase OS=Pyrococcus furiosu...    29   8.7  
sp|Q1MTN3|PIC1_SCHPO Inner centromere protein-related protein pi...    29   8.7  
sp|Q9G2W8|NU5M_MYXGL NADH-ubiquinone oxidoreductase chain 5 OS=M...    29   8.9  

>sp|A9WLY4|SYC_RENSM Cysteinyl-tRNA synthetase OS=Renibacterium
           salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589)
           GN=cysS PE=3 SV=1
          Length = 493

 Score = 33.1 bits (74), Expect = 0.60
 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
 Frame = -2

Query: 383 GQSFGGRGISTALLLKPQDRRAGSFGNIHINVSPLILISRGSMRTTRGYL----FRQSIG 216
           G+ F    +   L+    ++ + S GN+   + P  L ++ S R  R YL    +R  + 
Sbjct: 251 GRPFANFWMHNGLVAYQGEKMSKSIGNV---IGPGELFAQASPRVVRYYLGQAHYRSVLD 307

Query: 215 KNPGGMKEKVLLLARVDGLML 153
            +P  ++E    LAR+DG ++
Sbjct: 308 YSPESLEEAAAALARIDGFLV 328


>sp|Q8TGN9|YG031_YEAST Uncharacterized protein YGR031C-A
           OS=Saccharomyces cerevisiae GN=YGR031C-A PE=2 SV=1
          Length = 163

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 39/149 (26%), Positives = 56/149 (37%), Gaps = 18/149 (12%)
 Frame = +1

Query: 13  LSKQGRIELLRLSSSWHCINRCVSDLEPSSIP-----HNGQVLDCARSILSLSIKPSTLA 177
           ++  GR+   R  S  H     +S L  +S        +  V D     LS+    S + 
Sbjct: 1   MNSAGRVHRSRAGSRGHA---AISPLTMASFSVARGIRSSNVYDDTDDELSILTFFSAVR 57

Query: 178 NNKTFSFIPPGFFPMLCLKRYPRVVLILPLDIRIKGDTLM*-----MFPKLPALLS---- 330
            N+  S +PP      C      V ++LPL + I    LM      +  KL    S    
Sbjct: 58  RNRLTSSLPP-ILSARCSSACFSVRIVLPLSLTISISALMYSTNSALGRKLTGAFSIQTN 116

Query: 331 ----CGFNRSAVDIPLPPKLCPYTPSPLL 405
               CGF R+++   LPP  CP    P L
Sbjct: 117 IEQSCGFFRTSIMATLPPIECPIIIGPPL 145


>sp|Q7XR91|COBL7_ORYSJ COBRA-like protein 7 OS=Oryza sativa subsp.
           japonica GN=BC1LP1 PE=3 SV=2
          Length = 439

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +1

Query: 1   TAQSLSKQGRIELLRLSSSWHCINR--CVSDLEPSSIPHNGQVLDCARSILSLSIKPSTL 174
           T    ++QG    +R ++  HC  +   + DL P + P+N QV  C R  +  S+  +  
Sbjct: 81  TGAEATEQGDCHRIRGATRPHCCEKQPVIVDLPPGT-PYNNQVSSCCRGGVLSSLTQNNR 139

Query: 175 ANNKTFSFIPPGF 213
            +   F  +  GF
Sbjct: 140 TSTAAFQMVVGGF 152


>sp|Q5XHZ2|SYCE1_RAT Synaptonemal complex central element protein 1
           OS=Rattus norvegicus GN=Syce1 PE=2 SV=2
          Length = 329

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 158 MLKDKIERAQSRTCPLCGMEEGSRSLTHLLIQCHE 54
           ++K K+E  Q R C LCG E  S     L ++ HE
Sbjct: 203 LIKAKLEDVQHRLCALCGPEGSSTFSDGLFLRSHE 237


>sp|P25298|RNA14_YEAST mRNA 3'-end-processing protein RNA14
           OS=Saccharomyces cerevisiae GN=RNA14 PE=1 SV=2
          Length = 677

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -2

Query: 92  SRSLTHLLIQCHELDNLRSSIRPCLDK 12
           S SLT  L +C+ELDN   S+  C DK
Sbjct: 348 SPSLTFKLSECYELDNDSESVSNCFDK 374


>sp|Q24742|TRX_DROVI Histone-lysine N-methyltransferase trithorax
            OS=Drosophila virilis GN=trx PE=3 SV=1
          Length = 3828

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 11/37 (29%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = -1

Query: 315  KLWEHSHQCVSLDPYIER-KYEDYAWIPL*AEHREEP 208
            +L E++++C   +PY+ R +Y+ ++W+   + HR++P
Sbjct: 3619 ELQENAYECARCEPYVSRSEYDMFSWLA--SRHRKQP 3653


>sp|P33527|MRP1_HUMAN Multidrug resistance-associated protein 1
           OS=Homo sapiens GN=ABCC1 PE=1 SV=2
          Length = 1531

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -3

Query: 397 DLVYKDKVLGGEVYQRRFC*NRKTGELEALGTFTSMCLP 281
           +L +KDKVL   + Q      +K+  L A+GTFT +C P
Sbjct: 521 ELAFKDKVLA--IRQEELKVLKKSAYLSAVGTFTWVCTP 557


>sp|Q5F364|MRP1_CHICK Multidrug resistance-associated protein 1
           OS=Gallus gallus GN=ABCC1 PE=2 SV=1
          Length = 1525

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = -3

Query: 397 DLVYKDKVLGGEVYQRRFC*NRKTGELEALGTFTSMCLP 281
           +L +++KVL  E+ Q+     +K+  L A+GTFT +C P
Sbjct: 520 ELAFREKVL--EIRQKELKVLKKSAYLAAMGTFTWVCAP 556


>sp|Q864R9|MRP1_MACFA Multidrug resistance-associated protein 1
           OS=Macaca fascicularis GN=ABCC1 PE=2 SV=1
          Length = 1531

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -3

Query: 397 DLVYKDKVLGGEVYQRRFC*NRKTGELEALGTFTSMCLP 281
           +L +KDKVL   + Q      +K+  L A+GTFT +C P
Sbjct: 521 ELAFKDKVLA--IRQEELKVLKKSAYLAAVGTFTWVCTP 557


>sp|Q6UR05|MRP1_CANFA Multidrug resistance-associated protein 1
           OS=Canis familiaris GN=ABCC1 PE=2 SV=1
          Length = 1531

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -3

Query: 397 DLVYKDKVLGGEVYQRRFC*NRKTGELEALGTFTSMCLP 281
           +L +KDKVL   + Q      +K+  L A+GTFT +C P
Sbjct: 521 ELAFKDKVLA--IRQEELKVLKKSAYLAAVGTFTWVCTP 557
tr_hit_id B8NK15
Definition tr|B8NK15|B8NK15_ASPFL Putative uncharacterized protein OS=Aspergillus flavus NRRL3357
Align length 110
Score (bit) 34.7
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920441|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_B06.
         (465 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8NK15|B8NK15_ASPFL Putative uncharacterized protein OS=Asper...    35   2.5  
tr|Q5V7S1|Q5V7S1_HALMA Putative transposase OS=Haloarcula marism...    34   4.1  
tr|Q18IJ4|Q18IJ4_HALWD IS1341-type transposase OS=Haloquadratum ...    33   5.4  
tr|A5YSQ6|A5YSQ6_9EURY IS1341-type transposase OS=uncultured hal...    33   5.4  
tr|Q7S5Y4|Q7S5Y4_NEUCR Putative uncharacterized protein OS=Neuro...    33   5.5  
tr|Q6NE94|Q6NE94_NEUCR Putative uncharacterized protein 45B12.01...    33   5.5  
tr|A7D4C7|A7D4C7_9EURY Transposase, IS605 OrfB family OS=Halorub...    33   9.1  
tr|A7D438|A7D438_9EURY Transposase, IS605 OrfB family OS=Halorub...    33   9.1  

>tr|B8NK15|B8NK15_ASPFL Putative uncharacterized protein
           OS=Aspergillus flavus NRRL3357 GN=AFLA_070640 PE=4 SV=1
          Length = 229

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 17/110 (15%)
 Frame = -1

Query: 465 AGLKTWIADLVNNIPDWNQFKKWTWCIRTKFWGERYINGASVETAR-----QESWKLWEH 301
           A  ++  A ++ N  D++Q  +W     T FWG ++     +  A        ++ + E 
Sbjct: 61  AACESVAAGMLGNGWDYSQILRWA----TTFWGNKWSEKVRLSVANALKDLNSAFSITER 116

Query: 300 SHQCV------------SLDPYIERKYEDYAWIPL*AEHREEPRWDEGES 187
            H+C             +   ++E++      +P+  EH +E  WD  ES
Sbjct: 117 VHRCAHALTSEDNEVMATYRTFVEQRRRLLVQLPVPDEHEDEDEWDSYES 166


>tr|Q5V7S1|Q5V7S1_HALMA Putative transposase OS=Haloarcula
           marismortui GN=tnp PE=4 SV=1
          Length = 438

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -2

Query: 176 ARVDGLMLKDKIERAQSRTCPLCGMEEGSRSLTHLLIQCHELD 48
           A+V+G+ + +  ER  S+TC +CG E+ S+ +   L  C   D
Sbjct: 333 AKVEGIEVMEVSERDTSKTCCVCGREDDSQRVERGLYVCESCD 375


>tr|Q18IJ4|Q18IJ4_HALWD IS1341-type transposase OS=Haloquadratum
           walsbyi (strain DSM 16790) GN=HQ2051A PE=4 SV=1
          Length = 441

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = -2

Query: 176 ARVDGLMLKDKIERAQSRTCPLCGMEEGSRSLTHLLIQCHELDN 45
           A+V+G+ + +  ER  S+TC +CG ++ S+ +   L  C E D+
Sbjct: 336 AKVEGIEVGEVSERDTSKTCCVCGRKDDSQRVERGLYVCEEHDD 379


>tr|A5YSQ6|A5YSQ6_9EURY IS1341-type transposase OS=uncultured
           haloarchaeon PE=4 SV=1
          Length = 439

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = -2

Query: 176 ARVDGLMLKDKIERAQSRTCPLCGMEEGSRSLTHLLIQCHELDN 45
           A+V+G+ + +  ER  S+TC +CG ++ S+ +   L  C E D+
Sbjct: 334 AKVEGIEVGEVSERDTSKTCCVCGRKDDSQRVERGLYVCEEHDD 377


>tr|Q7S5Y4|Q7S5Y4_NEUCR Putative uncharacterized protein
           OS=Neurospora crassa GN=NCU05622 PE=4 SV=2
          Length = 1088

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -1

Query: 378 KFWGERYINGASVETARQESWKLWEHSHQCVSLDPYIERKYEDYAWI 238
           KF+  R + G S     ++ + L   +   + +DPY   KY  Y W+
Sbjct: 338 KFFDSRAVGGTSTPRRTEDYYSLIPRAETVLEVDPYAIEKYAHYGWV 384


>tr|Q6NE94|Q6NE94_NEUCR Putative uncharacterized protein 45B12.010
           OS=Neurospora crassa GN=45B12.010 PE=4 SV=1
          Length = 957

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -1

Query: 378 KFWGERYINGASVETARQESWKLWEHSHQCVSLDPYIERKYEDYAWI 238
           KF+  R + G S     ++ + L   +   + +DPY   KY  Y W+
Sbjct: 207 KFFDSRAVGGTSTPRRTEDYYSLIPRAETVLEVDPYAIEKYAHYGWV 253


>tr|A7D4C7|A7D4C7_9EURY Transposase, IS605 OrfB family OS=Halorubrum
           lacusprofundi ATCC 49239 GN=HlacDRAFT_0181 PE=4 SV=1
          Length = 444

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -2

Query: 176 ARVDGLMLKDKIERAQSRTCPLCGMEEGSRSLTHLLIQCHELD 48
           ARV+G+ + +  ER  S+TC  CG  + S+ +   L  C E D
Sbjct: 340 ARVEGIEVLEVSERDTSKTCCTCGKTDDSQRVHRGLYVCDECD 382


>tr|A7D438|A7D438_9EURY Transposase, IS605 OrfB family OS=Halorubrum
           lacusprofundi ATCC 49239 GN=HlacDRAFT_2716 PE=4 SV=1
          Length = 444

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -2

Query: 176 ARVDGLMLKDKIERAQSRTCPLCGMEEGSRSLTHLLIQCHELD 48
           ARV+G+ + +  ER  S+TC  CG  + S+ +   L  C E D
Sbjct: 340 ARVEGIEVLEVSERDTSKTCCTCGKTDDSQRVHRGLYVCDECD 382