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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920444
Clone id YMU001_000137_B09
Library
Length 345
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000137_B09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCAAGCGCAAAAACGCAGGAAGCCGCCGATCGTTTGACCCTGTAATGGCCCCTCAATGTT
CTACATACCAGCCCGCTTTTTCATGGTTTTTAAACAAAAACATCAGACTCAGCTTGCACC
ACTCTTCATCTTGGTTATTTGCTCTAGCAAGTATTTGCTTTCTTCCTCCCAATTTACACT
TGAAATGGACCTTACTGTGATGCGTAGTCTCTTCTCGTTCATGTACTCCGATTGAACGAC
ACTAACCCTTAGCACATAAGGCACCCACACAGCCTTTTTCAGCTCATCGCTGTAAGCTTT
CATTTCTCCATCCTATGACCTTATCTCAGCTAGCTTATCTGCTGG
■■Homology search results ■■ -
sp_hit_id Q92372
Definition sp|Q92372|RFA1_SCHPO Replication factor A protein 1 OS=Schizosaccharomyces pombe
Align length 69
Score (bit) 46.2
E-value 5.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920444|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_B09.
         (345 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q92372|RFA1_SCHPO Replication factor A protein 1 OS=Schizosac...    46   5e-05
sp|Q30NX0|TIG_SULDN Trigger factor OS=Sulfurimonas denitrificans...    33   0.44 
sp|P56342|PSAB_CHLVU Photosystem I P700 chlorophyll a apoprotein...    30   4.9  
sp|Q3ZIZ3|PSAB_PSEAK Photosystem I P700 chlorophyll a apoprotein...    29   6.4  
sp|Q20EW7|PSAB_OLTVI Photosystem I P700 chlorophyll a apoprotein...    29   6.4  
sp|Q19V90|PSAB_CHLAT Photosystem I P700 chlorophyll a apoprotein...    29   6.4  
sp|Q8R4V1|NFAM1_MOUSE NFAT activation molecule 1 OS=Mus musculus...    29   6.4  
sp|Q96EZ4|MYEOV_HUMAN Myeloma-overexpressed gene protein OS=Homo...    29   6.4  
sp|Q04487|YM07_YEAST Putative succinate dehydrogenase [ubiquinon...    29   8.3  

>sp|Q92372|RFA1_SCHPO Replication factor A protein 1
           OS=Schizosaccharomyces pombe GN=ssb1 PE=1 SV=1
          Length = 609

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 22/69 (31%), Positives = 43/69 (62%)
 Frame = -1

Query: 342 ADKLAEIRS*DGEMKAYSDELKKAVWVPYVLRVSVVQSEYMNEKRLRITVRSISSVNWEE 163
           AD+L +++  + +  A+ + + +A ++PY+ +    Q  +  E R+R TV SI+ ++W+E
Sbjct: 539 ADELNDLQ--ENDENAFMNCMAEACYMPYIFQCRAKQDNFKGEMRVRYTVMSINQMDWKE 596

Query: 162 ESKYLLEQI 136
           ESK L+  I
Sbjct: 597 ESKRLINFI 605


>sp|Q30NX0|TIG_SULDN Trigger factor OS=Sulfurimonas denitrificans
           (strain ATCC 33889 / DSM 1251) GN=tig PE=3 SV=1
          Length = 433

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 17/59 (28%), Positives = 34/59 (57%)
 Frame = -1

Query: 300 KAYSDELKKAVWVPYVLRVSVVQSEYMNEKRLRITVRSISSVNWEEESKYLLEQITKMK 124
           K Y++ELK A+   YV +++    E++ E+ + +++   +S   E+E K L E   K++
Sbjct: 287 KLYNEELKSALLETYVEKINFDLPEFVVEQEIDVSLNRKASTMSEDEIKELRENADKLQ 345


>sp|P56342|PSAB_CHLVU Photosystem I P700 chlorophyll a apoprotein A2
           OS=Chlorella vulgaris GN=psaB PE=3 SV=1
          Length = 734

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 63  TYQPAFSWFLNKNIRLSLHHSSSWLFALASICFLPPNLHL 182
           ++QPA SWF  KN    L+H  + LF ++S+ +    +H+
Sbjct: 160 SFQPALSWF--KNAESRLNHHLAGLFGVSSLAWTGHLVHV 197


>sp|Q3ZIZ3|PSAB_PSEAK Photosystem I P700 chlorophyll a apoprotein A2
           OS=Pseudendoclonium akinetum GN=psaB PE=3 SV=1
          Length = 735

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 66  YQPAFSWFLNKNIRLSLHHSSSWLFALASICFLPPNLHL 182
           +QP  SWF  KN    L+H  S LF ++S+ +    +H+
Sbjct: 162 FQPGLSWF--KNAESRLNHHLSGLFGVSSLAWTGHLIHV 198


>sp|Q20EW7|PSAB_OLTVI Photosystem I P700 chlorophyll a apoprotein A2
           OS=Oltmannsiellopsis viridis GN=psaB PE=3 SV=1
          Length = 734

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 66  YQPAFSWFLNKNIRLSLHHSSSWLFALASICFLPPNLHL 182
           +QP+ SWF  KN    L+H  S LF ++S+ +    +H+
Sbjct: 161 FQPSLSWF--KNAESRLNHHLSGLFGVSSLAWTGHLVHV 197


>sp|Q19V90|PSAB_CHLAT Photosystem I P700 chlorophyll a apoprotein A2
           OS=Chlorokybus atmophyticus GN=psaB PE=3 SV=1
          Length = 734

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 66  YQPAFSWFLNKNIRLSLHHSSSWLFALASICFLPPNLHL 182
           +QP+ SWF  KN    L+H  S LF ++S+ +    +H+
Sbjct: 161 FQPSLSWF--KNAESRLNHHLSGLFGVSSLAWTGHLVHV 197


>sp|Q8R4V1|NFAM1_MOUSE NFAT activation molecule 1 OS=Mus musculus
           GN=Nfam1 PE=1 SV=1
          Length = 264

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 81  SWFLNKNIRLSLHHSSSWLFALASICFLP 167
           SW L +  R+   H  SWL A   +C LP
Sbjct: 3   SWLLRRGARVRCLHPPSWLPAWCFLCLLP 31


>sp|Q96EZ4|MYEOV_HUMAN Myeloma-overexpressed gene protein OS=Homo
           sapiens GN=MYEOV PE=2 SV=1
          Length = 313

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +3

Query: 57  CSTYQPAFSWFLNKNIRLSLHHSSSWLFALASICFLPPNLH 179
           C TY PA    L     L L  S SW   L  + FL  +LH
Sbjct: 6   CVTYTPALPIGLCTRCCLCLEQSPSWCHCLRGVSFLTFHLH 46


>sp|Q04487|YM07_YEAST Putative succinate dehydrogenase [ubiquinone]
           cytochrome b subunit, mitochondrial OS=Saccharomyces
           cerevisiae GN=YMR118C PE=2 SV=1
          Length = 196

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 21  SRRSFDPVMAPQCSTYQPAFSWFLNKNIRLSLHHSSSWLFALASICF 161
           S+R   P+ +P  + Y+P  SW+L+     SLH  S  L AL    F
Sbjct: 68  SQRKKRPI-SPHLTVYEPEMSWYLS-----SLHRISGVLLALGFYAF 108
tr_hit_id A7PD95
Definition tr|A7PD95|A7PD95_VITVI Chromosome chr17 scaffold_12, whole genome shotgun sequence OS=Vitis vinifera
Align length 74
Score (bit) 81.6
E-value 2.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920444|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_B09.
         (345 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PD95|A7PD95_VITVI Chromosome chr17 scaffold_12, whole genom...    82   2e-14
tr|A5AJR8|A5AJR8_VITVI Putative uncharacterized protein OS=Vitis...    82   2e-14
tr|A6BLP0|A6BLP0_IPONI 70 kDa subunit of replication protein A O...    81   3e-14
tr|A7R6H1|A7R6H1_VITVI Chromosome undetermined scaffold_1277, wh...    77   6e-13
tr|A7R2H8|A7R2H8_VITVI Chromosome undetermined scaffold_430, who...    77   6e-13
tr|B4FWF2|B4FWF2_MAIZE Putative uncharacterized protein OS=Zea m...    76   1e-12
tr|B6U4N2|B6U4N2_MAIZE Replication protein A 70 kDa DNA-binding ...    75   1e-12
tr|A9TL82|A9TL82_PHYPA Predicted protein OS=Physcomitrella paten...    75   1e-12
tr|Q7Y069|Q7Y069_ORYSJ Replication protein A 70b OS=Oryza sativa...    75   2e-12
tr|Q10Q08|Q10Q08_ORYSJ Os03g0214100 protein OS=Oryza sativa subs...    75   2e-12
tr|O24183|O24183_ORYSA Replication protein A1 OS=Oryza sativa GN...    75   2e-12
tr|A2XDX4|A2XDX4_ORYSI Putative uncharacterized protein OS=Oryza...    75   2e-12
tr|A5AF61|A5AF61_VITVI Putative uncharacterized protein OS=Vitis...    75   2e-12
tr|B6SL03|B6SL03_MAIZE Replication protein A 70 kDa DNA-binding ...    74   3e-12
tr|A5B4L5|A5B4L5_VITVI Putative uncharacterized protein OS=Vitis...    71   3e-11
tr|A7PJ81|A7PJ81_VITVI Chromosome chr12 scaffold_18, whole genom...    69   9e-11
tr|Q9SD82|Q9SD82_ARATH Replication factor A-like protein OS=Arab...    68   3e-10
tr|Q9FME0|Q9FME0_ARATH Replication protein A1 (Putative RNA heli...    65   2e-09
tr|Q570B6|Q570B6_ARATH RNA helicase (Fragment) OS=Arabidopsis th...    65   2e-09
tr|Q9SKI4|Q9SKI4_ARATH Putative replication protein A1 (At2g0651...    42   0.015
tr|Q3E6P3|Q3E6P3_ARATH Uncharacterized protein At2g06510.2 OS=Ar...    42   0.015
tr|B6K586|B6K586_SCHJP Replication factor-A protein OS=Schizosac...    42   0.015
tr|Q00SK8|Q00SK8_OSTTA Replication protein, putative (ISS) OS=Os...    41   0.026
tr|Q6WG36|Q6WG36_PEA RPA 70kDa subunit OS=Pisum sativum PE=2 SV=1      40   0.075
tr|A8J9G7|A8J9G7_CHLRE Replication protein A, 70 kDa DNA-binding...    38   0.29 
tr|Q9AVL8|Q9AVL8_ORYSJ Replication protein A 70kDa OS=Oryza sati...    37   0.64 
tr|Q6YZ49|Q6YZ49_ORYSJ Os02g0776800 protein OS=Oryza sativa subs...    37   0.64 
tr|A2XA72|A2XA72_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.64 
tr|A4S9Y0|A4S9Y0_OSTLU Predicted protein OS=Ostreococcus lucimar...    36   0.83 
tr|Q6CXF1|Q6CXF1_KLULA KLLA0A08844p OS=Kluyveromyces lactis GN=K...    36   1.1  

>tr|A7PD95|A7PD95_VITVI Chromosome chr17 scaffold_12, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016187001
           PE=4 SV=1
          Length = 604

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 37/74 (50%), Positives = 57/74 (77%)
 Frame = -1

Query: 342 ADKLAEIRS*DGEMKAYSDELKKAVWVPYVLRVSVVQSEYMNEKRLRITVRSISSVNWEE 163
           AD+L +++S +GE   +  +LK+A+WVP++ R+SV Q EYMNEKR RIT R++  V++  
Sbjct: 529 ADELDKLKSQEGEENLFQQKLKEAIWVPHLFRISVAQHEYMNEKRQRITARAVVPVDFAA 588

Query: 162 ESKYLLEQITKMKS 121
           ES+ LLE+I+KMK+
Sbjct: 589 ESRLLLEEISKMKT 602


>tr|A5AJR8|A5AJR8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_006284 PE=4 SV=1
          Length = 634

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 37/74 (50%), Positives = 57/74 (77%)
 Frame = -1

Query: 342 ADKLAEIRS*DGEMKAYSDELKKAVWVPYVLRVSVVQSEYMNEKRLRITVRSISSVNWEE 163
           AD+L +++S +GE   +  +LK+A+WVP++ R+SV Q EYMNEKR RIT R++  V++  
Sbjct: 559 ADELDKLKSQEGEENLFQQKLKEAIWVPHLFRISVAQHEYMNEKRQRITARAVVPVDFAA 618

Query: 162 ESKYLLEQITKMKS 121
           ES+ LLE+I+KMK+
Sbjct: 619 ESRLLLEEISKMKT 632


>tr|A6BLP0|A6BLP0_IPONI 70 kDa subunit of replication protein A
           OS=Ipomoea nil GN=RPA70 PE=2 SV=1
          Length = 604

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 39/72 (54%), Positives = 52/72 (72%)
 Frame = -1

Query: 342 ADKLAEIRS*DGEMKAYSDELKKAVWVPYVLRVSVVQSEYMNEKRLRITVRSISSVNWEE 163
           AD+L  +RS DG+  AY  +LK+A WVPY+ RVSV   EY NEKR RITVR+ + V++  
Sbjct: 529 ADELDRLRSQDGDSSAYQMKLKEATWVPYLFRVSVTPQEYNNEKRQRITVRAAAPVDFAA 588

Query: 162 ESKYLLEQITKM 127
           ES+Y LE++ KM
Sbjct: 589 ESRYFLEEMAKM 600


>tr|A7R6H1|A7R6H1_VITVI Chromosome undetermined scaffold_1277, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00008184001 PE=4 SV=1
          Length = 251

 Score = 76.6 bits (187), Expect = 6e-13
 Identities = 34/74 (45%), Positives = 57/74 (77%)
 Frame = -1

Query: 342 ADKLAEIRS*DGEMKAYSDELKKAVWVPYVLRVSVVQSEYMNEKRLRITVRSISSVNWEE 163
           AD+L +++S +GE   +  +LK+A+WVP++ R+SV Q EYMNEKR  IT +++ +V++  
Sbjct: 176 ADELDKLKSQEGEENRFQQKLKEAIWVPHLFRISVAQHEYMNEKRQWITAKAVVAVDFAA 235

Query: 162 ESKYLLEQITKMKS 121
           +S+ LLE+I+KMK+
Sbjct: 236 KSRLLLEEISKMKT 249


>tr|A7R2H8|A7R2H8_VITVI Chromosome undetermined scaffold_430, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00013048001 PE=4 SV=1
          Length = 104

 Score = 76.6 bits (187), Expect = 6e-13
 Identities = 34/74 (45%), Positives = 57/74 (77%)
 Frame = -1

Query: 342 ADKLAEIRS*DGEMKAYSDELKKAVWVPYVLRVSVVQSEYMNEKRLRITVRSISSVNWEE 163
           AD+L +++S +GE   +  +LK+A+WVP++ R+SV Q EYMNEKR  IT +++ +V++  
Sbjct: 29  ADELDKLKSQEGEENRFQQKLKEAIWVPHLFRISVAQHEYMNEKRQWITAKAVVAVDFAA 88

Query: 162 ESKYLLEQITKMKS 121
           +S+ LLE+I+KMK+
Sbjct: 89  KSRLLLEEISKMKT 102


>tr|B4FWF2|B4FWF2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 623

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 40/72 (55%), Positives = 53/72 (73%)
 Frame = -1

Query: 342 ADKLAEIRS*DGEMKAYSDELKKAVWVPYVLRVSVVQSEYMNEKRLRITVRSISSVNWEE 163
           AD+L  IR  +G+  +Y  +LK+A WVP++ RVSV Q EYMNEKR RITVR  + V++  
Sbjct: 550 ADELDRIRKEEGD-DSYVLKLKEATWVPHLFRVSVTQHEYMNEKRQRITVRGEAPVDFAA 608

Query: 162 ESKYLLEQITKM 127
           ESKYLLE+I K+
Sbjct: 609 ESKYLLEEIAKL 620


>tr|B6U4N2|B6U4N2_MAIZE Replication protein A 70 kDa DNA-binding
           subunit OS=Zea mays PE=2 SV=1
          Length = 618

 Score = 75.5 bits (184), Expect = 1e-12
 Identities = 41/72 (56%), Positives = 52/72 (72%)
 Frame = -1

Query: 342 ADKLAEIRS*DGEMKAYSDELKKAVWVPYVLRVSVVQSEYMNEKRLRITVRSISSVNWEE 163
           AD+L  IR  +G+  +Y+ +LK+A WVP++ RVSV Q EY NEKR RITVRS + V    
Sbjct: 545 ADELDRIRKEEGD-DSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRITVRSEAPVEHAA 603

Query: 162 ESKYLLEQITKM 127
           ESKYLLEQI K+
Sbjct: 604 ESKYLLEQIAKL 615


>tr|A9TL82|A9TL82_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_223341 PE=4 SV=1
          Length = 451

 Score = 75.5 bits (184), Expect = 1e-12
 Identities = 35/71 (49%), Positives = 52/71 (73%)
 Frame = -1

Query: 342 ADKLAEIRS*DGEMKAYSDELKKAVWVPYVLRVSVVQSEYMNEKRLRITVRSISSVNWEE 163
           AD L+E+R+  G+   Y + ++KA+W P V R+S  Q+EYM+EKR R+TVR++  V+W  
Sbjct: 380 ADNLSEMRNQAGDDNQYQNAVRKAMWQPCVYRISAAQTEYMSEKRQRLTVRTVVPVDWVA 439

Query: 162 ESKYLLEQITK 130
           ESK+LL +ITK
Sbjct: 440 ESKHLLAKITK 450


>tr|Q7Y069|Q7Y069_ORYSJ Replication protein A 70b OS=Oryza sativa
           subsp. japonica GN=OsRPA70b PE=2 SV=1
          Length = 630

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/72 (54%), Positives = 54/72 (75%)
 Frame = -1

Query: 342 ADKLAEIRS*DGEMKAYSDELKKAVWVPYVLRVSVVQSEYMNEKRLRITVRSISSVNWEE 163
           AD+L  IR  +G+  +Y  +LK+A WVP++ RVSV Q+EYMNEKR RITVRS + V+   
Sbjct: 557 ADELDRIRKEEGD-DSYLLKLKEATWVPHLFRVSVTQNEYMNEKRQRITVRSEAPVDHAA 615

Query: 162 ESKYLLEQITKM 127
           E+KY+LE+I K+
Sbjct: 616 EAKYMLEEIAKL 627


>tr|Q10Q08|Q10Q08_ORYSJ Os03g0214100 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0214100 PE=4 SV=1
          Length = 630

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/72 (54%), Positives = 54/72 (75%)
 Frame = -1

Query: 342 ADKLAEIRS*DGEMKAYSDELKKAVWVPYVLRVSVVQSEYMNEKRLRITVRSISSVNWEE 163
           AD+L  IR  +G+  +Y  +LK+A WVP++ RVSV Q+EYMNEKR RITVRS + V+   
Sbjct: 557 ADELDRIRKEEGD-DSYLLKLKEATWVPHLFRVSVTQNEYMNEKRQRITVRSEAPVDHAA 615

Query: 162 ESKYLLEQITKM 127
           E+KY+LE+I K+
Sbjct: 616 EAKYMLEEIAKL 627