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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920446
Clone id YMU001_000137_B11
Library
Length 409
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000137_B11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAAATATGTCCCAAATCCAATCACTTCTCACCATCTCCCCTGCAAAAGGCCTGGACCAAG
CCACCTTCAGTTCCCTGCCTAGATGGCTAAGCTACCTCCTGACTCTCTTGTTCCTCATCC
ACTCTCCCCTGCCACAGTGTGTCTGCACTGCAACAAGCATATCTGAGAGCATAAGCCTCA
TCATTCCATTCCCTGCCGAAAACACACCAGTGGCTTCCCAGTGAAATTAGAGTAAAATCC
ATACTCCTCATACTTCTTCCCATGGCCTCCGGAGCCTCTGGTGGTCTGGCCCCAGCTGCC
TCTCAGCCATCCTCTCCACCACTCTCTGGACTGTCCTCCCCACTGTACATCATAGCCAAG
CTTGCTTCTGCCACAGGCCTTTACACTTGCTTGCTCAGCAGCCTGGAAC
■■Homology search results ■■ -
sp_hit_id P97879
Definition sp|P97879|GRIP1_RAT Glutamate receptor-interacting protein 1 OS=Rattus norvegicus
Align length 62
Score (bit) 33.5
E-value 0.34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920446|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_B11.
         (409 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P97879|GRIP1_RAT Glutamate receptor-interacting protein 1 OS=...    33   0.34 
sp|P97260|SCAP_CRIGR Sterol regulatory element-binding protein c...    32   1.3  
sp|A5DL80|DBP2_PICGU ATP-dependent RNA helicase DBP2 OS=Pichia g...    32   1.3  
sp|Q9SPL2|CIP8_ARATH E3 ubiquitin-protein ligase CIP8 OS=Arabido...    31   1.7  
sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 O...    31   2.2  
sp|Q0U2J8|ATG18_PHANO Autophagy-related protein 18 OS=Phaeosphae...    30   2.8  
sp|Q38913|EXTN1_ARATH Extensin-1 OS=Arabidopsis thaliana GN=EXT1...    30   2.9  
sp|Q9HGP0|PVG4_SCHPO MADS-box transcription factor pvg4 OS=Schiz...    30   3.8  
sp|Q91V33|KHDR1_RAT KH domain-containing, RNA-binding, signal tr...    30   5.0  
sp|Q8UUW7|KHDR1_CHICK KH domain-containing, RNA-binding, signal ...    30   5.0  
sp|Q91ZR2|SNX18_MOUSE Sorting nexin-18 OS=Mus musculus GN=Snx18 ...    29   6.5  
sp|Q60749|KHDR1_MOUSE KH domain-containing, RNA-binding, signal ...    29   6.5  
sp|Q6RFL5|BSH_CHICK Brain-specific homeobox protein homolog OS=G...    29   6.5  
sp|P17656|COL2_CAEEL Cuticle collagen 2 OS=Caenorhabditis elegan...    29   8.2  
sp|A4F8J0|TATB_SACEN Sec-independent protein translocase protein...    29   8.5  
sp|Q01780|EXOSX_HUMAN Exosome component 10 OS=Homo sapiens GN=EX...    29   8.5  

>sp|P97879|GRIP1_RAT Glutamate receptor-interacting protein 1
           OS=Rattus norvegicus GN=Grip1 PE=1 SV=1
          Length = 1112

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 21/62 (33%), Positives = 27/62 (43%)
 Frame = +2

Query: 53  GPSHLQFPA*MAKLPPDSLVPHPLSPATVCLHCNKHI*EHKPHHSIPCRKHTSGFPVKLE 232
           GP H++      +LP D     P + +   +H N H   H PHH   CR    GFP  L 
Sbjct: 344 GPDHVKIQRSDRQLPWD-----PWASSQCSVHTNHH---HNPHHPDHCRVPALGFPKALT 395

Query: 233 *N 238
            N
Sbjct: 396 PN 397


>sp|P97260|SCAP_CRIGR Sterol regulatory element-binding protein
           cleavage-activating protein OS=Cricetulus griseus
           GN=SCAP PE=1 SV=1
          Length = 1276

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +2

Query: 11  PNPITSHHLPCKRPGPSHLQFPA*MAKLPPDSLVPHPL 124
           P P+ S  LP  RP P+   FP    KLP +  VP  L
Sbjct: 560 PMPVPSGVLPASRPDPAFSIFPPDAPKLPENQTVPGEL 597


>sp|A5DL80|DBP2_PICGU ATP-dependent RNA helicase DBP2 OS=Pichia
           guilliermondii GN=DBP2 PE=3 SV=3
          Length = 554

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 19/51 (37%), Positives = 23/51 (45%)
 Frame = -2

Query: 360 LGYDVQWGGQSREWWRGWLRGSWGQTTRGSGGHGKKYEEYGFYSNFTGKPL 208
           L YD +  G    + RG  RG WG   RG  G G+     GF S   G P+
Sbjct: 503 LRYDRRSFGSHIRYGRGGGRGGWGGRGRGGRGRGRG----GFQSGSNGAPM 549


>sp|Q9SPL2|CIP8_ARATH E3 ubiquitin-protein ligase CIP8
           OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1
          Length = 334

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 140 CLHCNKHI*EHKPHHSIPCRKHTSGFPVKLE*NPYSSYFFPWPPEPL 280
           C HCNK +        + C +   GF   ++  P ++Y  P PP+PL
Sbjct: 17  CYHCNKRVVVETLDDFVVCCECNKGFVESIQPTP-AAYSSPAPPQPL 62


>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0
           OS=Rattus norvegicus GN=Hnrnpd PE=2 SV=1
          Length = 353

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 13/51 (25%)
 Frame = -2

Query: 339 GGQSREWWRGWLR------GSWGQTTRGSGGHG-------KKYEEYGFYSN 226
           GG S+ W +G+        GS+G  ++G GG+G         Y  YG YSN
Sbjct: 282 GGPSQNWNQGYSNYWNQGYGSYGYNSQGYGGYGGYDYTGYNSYYGYGDYSN 332


>sp|Q0U2J8|ATG18_PHANO Autophagy-related protein 18 OS=Phaeosphaeria
           nodorum GN=ATG18 PE=3 SV=2
          Length = 414

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +3

Query: 123 SPLPQCVCTATSISESISLIIPFPAENTPVASQ*N*SKIHTPHTSSH 263
           SP P  +C  ++ SE+  LI P P +  P   Q      H P  S H
Sbjct: 118 SPNPNAICALSASSENNYLIYPLPTKAAPATFQ---PPSHAPPKSDH 161


>sp|Q38913|EXTN1_ARATH Extensin-1 OS=Arabidopsis thaliana GN=EXT1
           PE=2 SV=2
          Length = 373

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 29/99 (29%), Positives = 35/99 (35%), Gaps = 8/99 (8%)
 Frame = +2

Query: 5   YVPNPITSHHLPCKRPGPSHLQFPA*MAKLPPDSLVPHPLSPATVCLHC----NKHI*EH 172
           Y P P+  H      P P H   P  +   PP    P   SP  V  H      KH    
Sbjct: 280 YSPPPVVYH----SPPPPVHYSPPPVVYHSPPP---PVHYSPPPVVYHSPPPPKKHYEYK 332

Query: 173 KP----HHSIPCRKHTSGFPVKLE*NPYSSYFFPWPPEP 277
            P    H+S P   H+   PV     P+  Y +  PP P
Sbjct: 333 SPPPPVHYSPPTVYHSPPPPVHHYSPPHQPYLYKSPPPP 371


>sp|Q9HGP0|PVG4_SCHPO MADS-box transcription factor pvg4
           OS=Schizosaccharomyces pombe GN=pvg4 PE=2 SV=1
          Length = 372

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
 Frame = +2

Query: 11  PNPITSHHLPCKRP--GPSHLQFPA*MAKLPPDSLVPHPLSP-ATVCLHCNKHI*EHKPH 181
           P P T HH P  RP   P H  F       PP      P+SP ATV L        H P+
Sbjct: 162 PFPPTQHHHPHTRPPHHPPHPHFH--NNNYPPPYCFQSPVSPGATVPLQ------HHSPY 213

Query: 182 HSIPCRKHTSGFPVKLE*NPYSSYFFP 262
            S       +GFP       ++ Y++P
Sbjct: 214 PS------DNGFPGHRRQTHFAPYYYP 234


>sp|Q91V33|KHDR1_RAT KH domain-containing, RNA-binding, signal
           transduction-associated protein 1 OS=Rattus norvegicus
           GN=Khdrbs1 PE=1 SV=1
          Length = 443

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -2

Query: 357 GYDVQWGGQSREWWRGWLRGSWGQTTRGSGGHGK---KYEEYG 238
           GYD  +  QS E + G+   S G++     GHG+    YE YG
Sbjct: 370 GYDDSYAEQSYEGYEGYYSQSQGESEYYDYGHGELQDSYEAYG 412


>sp|Q8UUW7|KHDR1_CHICK KH domain-containing, RNA-binding, signal
           transduction-associated protein 1 OS=Gallus gallus
           GN=KHDRBS1 PE=2 SV=1
          Length = 433

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -2

Query: 357 GYDVQWGGQSREWWRGWLRGSWGQTTRGSGGHGKKYEEYGFY 232
           GYD  +  QS E + G+     G T     GHG+  E Y  Y
Sbjct: 360 GYDDAYADQSYEGYEGYYSQGQGDTEYYDYGHGEAQETYEAY 401
tr_hit_id A9HEP8
Definition tr|A9HEP8|A9HEP8_GLUDA Putative membrane protein OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5)
Align length 45
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920446|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_B11.
         (409 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9HEP8|A9HEP8_GLUDA Putative membrane protein OS=Gluconacetob...    35   1.4  
tr|B6TWU6|B6TWU6_MAIZE RNA-binding protein-like OS=Zea mays PE=2...    34   3.2  
tr|B4FWN0|B4FWN0_MAIZE Putative uncharacterized protein OS=Zea m...    34   3.2  
tr|Q6B8G6|Q6B8G6_9ACAR NPL-2 OS=Ixodes pacificus PE=4 SV=1             34   3.2  
tr|Q2GMM6|Q2GMM6_CHAGB Putative uncharacterized protein OS=Chaet...    34   3.2  
tr|A7SEB0|A7SEB0_NEMVE Predicted protein OS=Nematostella vectens...    34   4.2  
tr|Q76C71|Q76C71_EMENI Putative transcription factor RlmA (Putat...    34   4.2  
tr|Q159M1|Q159M1_MEHV1 Putative uncharacterized protein OS=Melea...    33   5.5  
tr|Q159G2|Q159G2_MEHV1 Putative uncharacterized protein OS=Melea...    33   5.5  
tr|B8LKP1|B8LKP1_PICSI Putative uncharacterized protein OS=Picea...    33   5.5  
tr|B6KXI5|B6KXI5_BRAFL Putative uncharacterized protein OS=Branc...    33   7.1  
tr|Q9SV10|Q9SV10_ARATH Putative uncharacterized protein F4F15.50...    33   9.3  
tr|Q7Y233|Q7Y233_ARATH At3g51940 OS=Arabidopsis thaliana GN=At3g...    33   9.3  
tr|Q4H3A0|Q4H3A0_CIOIN Zinc finger protein OS=Ciona intestinalis...    33   9.3  
tr|B4J8Q6|B4J8Q6_DROGR GH19946 OS=Drosophila grimshawi GN=GH1994...    33   9.3  
tr|B3CU18|B3CU18_ORITI Excinuclease ABC subunit A OS=Orientia ts...    33   9.4  

>tr|A9HEP8|A9HEP8_GLUDA Putative membrane protein
           OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 /
           DSM 5601 / PAl5) GN=GDI1320 PE=4 SV=1
          Length = 187

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 19/45 (42%), Positives = 22/45 (48%)
 Frame = -2

Query: 357 GYDVQWGGQSREWWRGWLRGSWGQTTRGSGGHGKKYEEYGFYSNF 223
           GY   WGG     WRG   G WG   RG GG G  Y  +G+Y  +
Sbjct: 62  GYRGGWGGGG---WRGGWGGGWG---RGWGGWGWGYPGWGYYGGW 100


>tr|B6TWU6|B6TWU6_MAIZE RNA-binding protein-like OS=Zea mays PE=2
           SV=1
          Length = 586

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -2

Query: 357 GYDVQWGGQSREWWRGW--LRGSWGQTTRGSGGHGKKYEEYGFYSNFTG 217
           GY  QWGGQ+  ++ G   +R  +    RG  G+G     +G++ N  G
Sbjct: 503 GYKRQWGGQNNGYYNGADNMRNDYSGRVRGPQGNGHPQNGHGYHQNGHG 551


>tr|B4FWN0|B4FWN0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 586

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -2

Query: 357 GYDVQWGGQSREWWRGW--LRGSWGQTTRGSGGHGKKYEEYGFYSNFTG 217
           GY  QWGGQ+  ++ G   +R  +    RG  G+G     +G++ N  G
Sbjct: 503 GYKRQWGGQNNGYYNGADNMRNDYSGRVRGPQGNGHPQNGHGYHQNGHG 551


>tr|Q6B8G6|Q6B8G6_9ACAR NPL-2 OS=Ixodes pacificus PE=4 SV=1
          Length = 78

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 23/60 (38%), Positives = 29/60 (48%)
 Frame = -2

Query: 402 AAEQASVKACGRSKLGYDVQWGGQSREWWRGWLRGSWGQTTRGSGGHGKKYEEYGFYSNF 223
           AA Q      GR   GY   +GG  R  + G+  G +G   RG GG+G+ Y  YG Y  F
Sbjct: 21  AAAQYGYGGYGRGYGGYGRGYGGYGR-GYGGY--GGYGGYGRGFGGYGRGYGGYGRYGYF 77


>tr|Q2GMM6|Q2GMM6_CHAGB Putative uncharacterized protein
           OS=Chaetomium globosum GN=CHGG_10778 PE=4 SV=1
          Length = 317

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -2

Query: 351 DVQWGGQSREWWRGWLRGSWGQTTRGSGGHGKKYEEYGFYSNFTGKPL 208
           ++Q  G SR WW G L    G +  GSGG+G   EE    +    +PL
Sbjct: 216 EMQRRGGSRRWWWGGLVNGGGGSGGGSGGNGGPREEIAVGAPTAAQPL 263


>tr|A7SEB0|A7SEB0_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g244664 PE=4 SV=1
          Length = 299

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 50  PGPSHLQFPA*MAKLPPDSLVPH-PLSPATVCLHCNKHI*EHKPHHSIPCRKH 205
           P P H Q P      P     PH PL  A +CLHCNK   E + +H   CR H
Sbjct: 242 PHPGHWQPPRSRVSTPGR---PHSPLDTAKLCLHCNKLFLE-EANHDEACRWH 290


>tr|Q76C71|Q76C71_EMENI Putative transcription factor RlmA (Putative
           uncharacterized protein) OS=Emericella nidulans GN=rlmA
           PE=2 SV=1
          Length = 605

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 23/91 (25%), Positives = 35/91 (38%)
 Frame = +2

Query: 11  PNPITSHHLPCKRPGPSHLQFPA*MAKLPPDSLVPHPLSPATVCLHCNKHI*EHKPHHSI 190
           P P    H      GP H        ++PP S+ P  ++P  + LH + H  +H P H  
Sbjct: 210 PRPPQFAHYGHHPQGPQHQPPHPQHHQMPPHSVPPQSMTPQPMPLHPHAHPQQHHPQHH- 268

Query: 191 PCRKHTSGFPVKLE*NPYSSYFFPWPPEPLV 283
              +H    P      P ++     PP P +
Sbjct: 269 --PQHHPQHPPHALAQPPTTMAMSQPPHPSI 297


>tr|Q159M1|Q159M1_MEHV1 Putative uncharacterized protein
           OS=Meleagrid herpesvirus 1 GN=MDV077.6 PE=4 SV=1
          Length = 52

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -2

Query: 351 DVQWGGQSREW----WRGWLRGSWGQTTRGSGGHG 259
           D  WGGQ REW      G +  SW Q++  SGG G
Sbjct: 5   DGGWGGQKREWGVQMGGGGVEQSWAQSSSASGGAG 39


>tr|Q159G2|Q159G2_MEHV1 Putative uncharacterized protein
           OS=Meleagrid herpesvirus 1 GN=MDV077.6 PE=4 SV=1
          Length = 52

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -2

Query: 351 DVQWGGQSREW----WRGWLRGSWGQTTRGSGGHG 259
           D  WGGQ REW      G +  SW Q++  SGG G
Sbjct: 5   DGGWGGQKREWGVQMGGGGVEQSWAQSSSASGGGG 39


>tr|B8LKP1|B8LKP1_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 546

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
 Frame = -2

Query: 372 GRSKLGYDVQWGGQSREWW----RGWLRGSWGQTTRG---SGGHGKKYEEYGFY 232
           G    GY  Q GG+   +     RG++ G  G+T RG   SGG G+ YE+  +Y
Sbjct: 458 GGMSRGYQGQRGGRGMGYGSGRGRGYMNGRGGRTGRGGSYSGGRGQYYEQGNYY 511