BP920447 |
Clone id |
YMU001_000137_B12 |
Library |
YMU01 |
Length |
583 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000137_B12. |
Accession |
BP920447 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL1431Contig1 |
Sequence |
CAGGCTGGGTGGAGAGGCTTTTCCAGTTTCTCGGGAAAAGGCCAGCTTAGCATTCAGTGA TATTCTTGTGGATGAGATCGATAGGCTGAGACAAAGGACAAATGGAGAAGCTCCTCATGC TCAAAGTGATCCTGATGCCATGATTTGGGAGTATGAGCCCTCTGAAGCACTTTCTCAACT AAAAAACGATGATTATGAAGAACTCATGATAGCTATGCAAAATATTCTTTATGACGACCT GCGGACTGAAAATGAGAAAAGAGACAGTGTATTACTGGAAGAGTTTGAGAAATCATGTGA GCAAGAGGATCGTGCTCTTTCAATGATGTTGGAACAACTACAAAATAGCGAGGAGGATGA GGTGATTTGCCCCATATGCAAAGCTGGAAAACTTCAGCAAAATCAGCATTTGATTTTTTG CAGTTGCGGGCATCTTCGGCTTGATGTTCAGCATGAGAAGATAAATTTGCACTTCTTGAG AAAAAGGCTTGAAGAGCTGCTGCAGCAGCATCATGATTCTGGCTGCCAAAGCCAGCCAGT GTTTTGTACAGATCACAGATTTTCTATGACGGCTCTGTATATA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q86UA6 |
Definition |
sp|Q86UA6|RIP_HUMAN RPA-interacting protein OS=Homo sapiens |
Align length |
161 |
Score (bit) |
54.3 |
E-value |
4.0e-07 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RQ50 |
Definition |
tr|A9RQ50|A9RQ50_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
198 |
Score (bit) |
125.0 |
E-value |
2.0e-27 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920447|Adiantum capillus-veneris mRNA, clone: YMU001_000137_B12. (561 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RQ50|A9RQ50_PHYPA Predicted protein OS=Physcomitrella paten... 125 2e-27 tr|Q6AT70|Q6AT70_ORYSJ Os05g0417300 protein OS=Oryza sativa subs... 121 3e-26 tr|A3B432|A3B432_ORYSJ Putative uncharacterized protein OS=Oryza... 121 3e-26 tr|B8AYA9|B8AYA9_ORYSI Putative uncharacterized protein OS=Oryza... 118 2e-25 tr|B4FC79|B4FC79_MAIZE Putative uncharacterized protein OS=Zea m... 108 2e-22 tr|Q9SU10|Q9SU10_ARATH Putative uncharacterized protein T20K18.1... 98 3e-19 tr|A7QB16|A7QB16_VITVI Chromosome chr5 scaffold_72, whole genome... 97 6e-19 tr|A5ALM6|A5ALM6_VITVI Putative uncharacterized protein OS=Vitis... 95 2e-18 tr|A7SU16|A7SU16_NEMVE Predicted protein OS=Nematostella vectens... 77 8e-13 tr|B6LTX0|B6LTX0_BRAFL Putative uncharacterized protein OS=Branc... 70 6e-11 tr|A4S242|A4S242_OSTLU Predicted protein OS=Ostreococcus lucimar... 68 3e-10 tr|Q012K2|Q012K2_OSTTA Homology to unknown gene OS=Ostreococcus ... 68 4e-10 tr|B6PJC2|B6PJC2_BRAFL Putative uncharacterized protein OS=Branc... 65 3e-09 tr|B5X5V6|B5X5V6_SALSA RPA-interacting protein A OS=Salmo salar ... 63 1e-08 tr|A4SC01|A4SC01_OSTLU Predicted protein OS=Ostreococcus lucimar... 61 4e-08 tr|Q5Q0B9|Q5Q0B9_ARATH Putative uncharacterized protein OS=Arabi... 61 5e-08 tr|B4DI36|B4DI36_HUMAN cDNA FLJ55061, highly similar to RPA-inte... 54 4e-06 tr|Q0P498|Q0P498_DANRE Zgc:153251 OS=Danio rerio GN=zgc:153251 P... 53 1e-05 tr|Q4SB95|Q4SB95_TETNG Chromosome undetermined SCAF14676, whole ... 51 4e-05 tr|Q5BW24|Q5BW24_SCHJA SJCHGC04076 protein (Fragment) OS=Schisto... 50 1e-04 tr|A9UZ06|A9UZ06_MONBE Predicted protein OS=Monosiga brevicollis... 50 1e-04 tr|B1H156|B1H156_XENTR LOC100145305 protein OS=Xenopus tropicali... 49 2e-04 tr|Q0PL83|Q0PL83_MOUSE RPA interacting protein alpha OS=Mus musc... 48 3e-04 tr|Q2TBS0|Q2TBS0_BOVIN RPA interacting protein OS=Bos taurus GN=... 48 4e-04 tr|A3QK57|A3QK57_MOUSE RPA interacting protein OS=Mus musculus G... 45 0.003 tr|Q5Q0B8|Q5Q0B8_ARATH Putative uncharacterized protein OS=Arabi... 44 0.005 tr|Q5Q0B7|Q5Q0B7_ARATH Putative uncharacterized protein OS=Arabi... 44 0.005 tr|B8BX13|B8BX13_THAPS Predicted protein OS=Thalassiosira pseudo... 41 0.051 tr|Q7Q1G3|Q7Q1G3_ANOGA AGAP009800-PA OS=Anopheles gambiae GN=AGA... 41 0.051 tr|A2E9E1|A2E9E1_TRIVA Putative uncharacterized protein OS=Trich... 41 0.051
>tr|A9RQ50|A9RQ50_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_117635 PE=4 SV=1 Length = 245
Score = 125 bits (313), Expect = 2e-27 Identities = 71/198 (35%), Positives = 110/198 (55%), Gaps = 11/198 (5%) Frame = +1
Query: 1 PVSREKA------SLAFSDILVDEIDRLRQRTNGEAPH-----AQSDPDAMIWEYEPSEA 147 PVS E A F +I+ DE+ R+RQ + A + ++ + M+WEYE A Sbjct: 47 PVSGESAHDNKYMESTFRNIVTDELKRVRQTSTNSAKNDTRRASEKEDSDMLWEYE---A 103
Query: 148 LSQLKNDDYEELMIAMQNILYDDLRTENEKRDSVLLEEFEKSCEQEDRALSMMLEQLQNS 327 ++L N+DY ELM+AM+ LYDD++ E +D + S + + + Sbjct: 104 PAELANEDYVELMLAMERALYDDMQAELRAQDGSNNSQISSSYCPNQKVIHYV------- 156
Query: 328 EEDEVICPICKAGKLQQNQHLIFCSCGHLRLDVQHEKINLHFLRKRLEELLQQHHDSGCQ 507 +D V+CP+CK +L+Q + +I CSCG RLD + ++I L FL+ RL ++ QQH DSGC Sbjct: 157 -QDGVLCPLCKKTQLKQIKTVIVCSCGDFRLDTKDDQIGLKFLQTRLADVHQQHADSGCL 215
Query: 508 SQPVFCTDHRFSMTALYI 561 QP F + +F + ALY+ Sbjct: 216 LQPTFSIEDQFGIPALYM 233
>tr|Q6AT70|Q6AT70_ORYSJ Os05g0417300 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0084P24.18 PE=2 SV=1 Length = 240
Score = 121 bits (303), Expect = 3e-26 Identities = 64/185 (34%), Positives = 110/185 (59%), Gaps = 3/185 (1%) Frame = +1
Query: 16 KASLAFSDILVDEIDRLRQRTNGEAPHAQSDPDAMIWEYEPSEALSQLKNDDYEELMIAM 195 K A DI+ DE+ +L+Q +G+A + + D MIWEY+ + ++ + E++++ M Sbjct: 55 KVESAVRDIISDELQKLKQHGDGKA---EEEAD-MIWEYQGPQTAKPVETES-EDILLEM 109
Query: 196 QNILYDDLRTENEKRDSVLLEEFEKSCEQEDRALSMMLEQLQNSEED---EVICPICKAG 366 + +LY+D+R D + E E E+++ LE +Q ++++ ++ CP+CK G Sbjct: 110 ERLLYEDMR------DEAIQIEVEALDEEDEYLAQAFLEHMQLTDKEANAKLWCPVCKQG 163
Query: 367 KLQQNQHLIFCSCGHLRLDVQHEKINLHFLRKRLEELLQQHHDSGCQSQPVFCTDHRFSM 546 +L++ +L++C+ LRLD+ +KINL FLR+RL + H D GC+S P FC F + Sbjct: 164 ELRETHNLVYCTMCKLRLDLGEDKINLEFLRERLANVHMDHLDRGCKSAPKFCLQTMFEL 223
Query: 547 TALYI 561 TALYI Sbjct: 224 TALYI 228
>tr|A3B432|A3B432_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_017804 PE=4 SV=1 Length = 209
Score = 121 bits (303), Expect = 3e-26 Identities = 64/185 (34%), Positives = 110/185 (59%), Gaps = 3/185 (1%) Frame = +1
Query: 16 KASLAFSDILVDEIDRLRQRTNGEAPHAQSDPDAMIWEYEPSEALSQLKNDDYEELMIAM 195 K A DI+ DE+ +L+Q +G+A + + D MIWEY+ + ++ + E++++ M Sbjct: 24 KVESAVRDIISDELQKLKQHGDGKA---EEEAD-MIWEYQGPQTAKPVETES-EDILLEM 78
Query: 196 QNILYDDLRTENEKRDSVLLEEFEKSCEQEDRALSMMLEQLQNSEED---EVICPICKAG 366 + +LY+D+R D + E E E+++ LE +Q ++++ ++ CP+CK G Sbjct: 79 ERLLYEDMR------DEAIQIEVEALDEEDEYLAQAFLEHMQLTDKEANAKLWCPVCKQG 132
Query: 367 KLQQNQHLIFCSCGHLRLDVQHEKINLHFLRKRLEELLQQHHDSGCQSQPVFCTDHRFSM 546 +L++ +L++C+ LRLD+ +KINL FLR+RL + H D GC+S P FC F + Sbjct: 133 ELRETHNLVYCTMCKLRLDLGEDKINLEFLRERLANVHMDHLDRGCKSAPKFCLQTMFEL 192
Query: 547 TALYI 561 TALYI Sbjct: 193 TALYI 197
>tr|B8AYA9|B8AYA9_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_19983 PE=4 SV=1 Length = 240
Score = 118 bits (296), Expect = 2e-25 Identities = 64/186 (34%), Positives = 108/186 (58%), Gaps = 4/186 (2%) Frame = +1
Query: 16 KASLAFSDILVDEIDRLRQRTNGEAPHAQSDPDA-MIWEYEPSEALSQLKNDDYEELMIA 192 K A DI+ DE+ +L+Q +G+A D +A MIWEY+ + ++ + E++++ Sbjct: 55 KVESAVKDIISDELQKLKQHGDGKA-----DQEADMIWEYQGPQTAKPVETES-EDILLE 108
Query: 193 MQNILYDDLRTENEKRDSVLLEEFEKSCEQEDRALSMMLEQLQNSEED---EVICPICKA 363 M+ +LY D+R D + E E E+++ LE +Q ++++ ++ CP+CK Sbjct: 109 MERLLYKDMR------DEAIQIEVEALDEEDEYLAQAFLEHMQLTDKEANAKLWCPVCKQ 162
Query: 364 GKLQQNQHLIFCSCGHLRLDVQHEKINLHFLRKRLEELLQQHHDSGCQSQPVFCTDHRFS 543 G+L++ +L++C+ L LD+ +KINL FLR+RL + H D GC+S P FC F Sbjct: 163 GELRETHNLVYCTMCKLHLDLGEDKINLEFLRERLANVHMDHLDRGCKSAPKFCLQTMFE 222
Query: 544 MTALYI 561 +TALYI Sbjct: 223 LTALYI 228
>tr|B4FC79|B4FC79_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 240
Score = 108 bits (271), Expect = 2e-22 Identities = 60/183 (32%), Positives = 105/183 (57%) Frame = +1
Query: 13 EKASLAFSDILVDEIDRLRQRTNGEAPHAQSDPDAMIWEYEPSEALSQLKNDDYEELMIA 192 EK A ++ DE+++L+Q +N E + D +IWEY+ A + + E++++ Sbjct: 52 EKVRSAVRSVISDEVEKLKQ-SNTENEDQEMD---VIWEYQGLHAAKPAEIES-EDILLE 106
Query: 193 MQNILYDDLRTENEKRDSVLLEEFEKSCEQEDRALSMMLEQLQNSEEDEVICPICKAGKL 372 M+ ++ +D+R E ++ L+E E + + M L ++ +E ++ CP+CK G L Sbjct: 107 MERLVCEDIREEVIRKQLEALDE-EDAYLAQSVLDHMQLNDIEAAETAKLWCPVCKQGDL 165
Query: 373 QQNQHLIFCSCGHLRLDVQHEKINLHFLRKRLEELLQQHHDSGCQSQPVFCTDHRFSMTA 552 ++ ++LI+C+ +LRLD+ +K+ L FLR+RL H D GC+S P FC F +TA Sbjct: 166 RETRNLIYCTLCNLRLDLGEDKMTLEFLRERLANAHMDHFDRGCKSAPKFCLQTMFGLTA 225
Query: 553 LYI 561 LYI Sbjct: 226 LYI 228
>tr|Q9SU10|Q9SU10_ARATH Putative uncharacterized protein T20K18.110 (Putative uncharacterized protein AT4g12760) OS=Arabidopsis thaliana GN=T20K18.110 PE=4 SV=1 Length = 227
Score = 98.2 bits (243), Expect = 3e-19 Identities = 64/191 (33%), Positives = 108/191 (56%), Gaps = 7/191 (3%) Frame = +1
Query: 10 REKASLAFSDILVDEIDRLRQRTNGEAPH--AQSDPDAMIWEYEPSEALSQLKNDDYEEL 183 +E + AF DI+ DE+ ++ + + + D D ++WEYE E L + D EE+ Sbjct: 31 KEIINCAFQDIVSDELKKIEDSSRNLSGNKTLTEDCDDILWEYE--EGLKGVYEGDSEEI 88
Query: 184 MIAMQNILYDDLRTENEKRDS-VLLEEFEKSCEQEDRALSMMLEQ--LQNSEEDE--VIC 348 ++ MQ I Y DL +E S V +E +E ++ED L+ ++ Q NSE++E + C Sbjct: 89 LLEMQQIFYKDLLSETNVNGSFVQVETWE---DEEDDYLAALVSQNMCLNSEQEESQIWC 145
Query: 349 PICKAGKLQQNQHLIFCSCGHLRLDVQHEKINLHFLRKRLEELLQQHHDSGCQSQPVFCT 528 PICK G+L +N I C+ ++L+ + E++NL+ L++RL E +H GC+ +P F Sbjct: 146 PICKKGELMENHRHIDCNMCDMQLN-KGEEVNLNILQERLAEAHGEHLQRGCRLKPEFSV 204
Query: 529 DHRFSMTALYI 561 +++ ALYI Sbjct: 205 QSVYNLKALYI 215
>tr|A7QB16|A7QB16_VITVI Chromosome chr5 scaffold_72, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00034766001 PE=4 SV=1 Length = 193
Score = 97.1 bits (240), Expect = 6e-19 Identities = 62/179 (34%), Positives = 93/179 (51%), Gaps = 4/179 (2%) Frame = +1
Query: 37 DILVDEIDRLRQRTNG---EAPHAQSDPDA-MIWEYEPSEALSQLKNDDYEELMIAMQNI 204 +I DE+ R R E P + + D M+WEY+ S + EE+M+ +Q + Sbjct: 7 EIFSDELQRFRTSALSGCSEIPTSTAKVDEDMLWEYDGLHTASHF---ECEEVMLELQRM 63
Query: 205 LYDDLRTENEKRDSVLLEEFEKSCEQEDRALSMMLEQLQNSEEDEVICPICKAGKLQQNQ 384 Y+D+R RD E+ + D A+ L + E+ CPICK GKL+QN Sbjct: 64 FYEDIRMNQTHRDGCNGTTEEEDEDYLDPAIFENLRLEDDKGCKEIWCPICKKGKLRQNN 123
Query: 385 HLIFCSCGHLRLDVQHEKINLHFLRKRLEELLQQHHDSGCQSQPVFCTDHRFSMTALYI 561 HLI+C+ L L+ + +++NL L+ RL E +H D GC+ P F +FS+TALYI Sbjct: 124 HLIYCTLCELGLE-RGDQVNLDCLQVRLGEAYSEHLDRGCRFTPQFHVYTQFSLTALYI 181
>tr|A5ALM6|A5ALM6_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004631 PE=4 SV=1 Length = 262
Score = 95.1 bits (235), Expect = 2e-18 Identities = 62/182 (34%), Positives = 94/182 (51%), Gaps = 7/182 (3%) Frame = +1
Query: 37 DILVDEIDRLRQRTNG---EAPHAQSDPDA-MIWEYEPSEALSQLKNDDYEELMIAMQNI 204 +I DE+ R R E P + + D M+WEY+ S + EE+M+ +Q + Sbjct: 83 EIFSDELQRFRTSALSGCSEIPTSTAKVDEDMLWEYDGLHTASHF---ECEEVMLELQRM 139
Query: 205 LYDDLRTENEKRDSVLLEEFEKSCEQEDRALSMMLEQLQNSEED---EVICPICKAGKLQ 375 Y+D+R R+ E ED + E L+ ++ E+ CPICK GKL+ Sbjct: 140 FYEDIRMNQTHREE----------EDEDYLDPAIFENLRLEDDKGCKEIWCPICKKGKLR 189
Query: 376 QNQHLIFCSCGHLRLDVQHEKINLHFLRKRLEELLQQHHDSGCQSQPVFCTDHRFSMTAL 555 QN HLI+C+ L L+ + +++NL L+ RL E +H D GC+ P F +FS+TAL Sbjct: 190 QNNHLIYCTLCELGLE-RGDQVNLDCLQVRLGEAYSEHLDRGCRFTPQFHVYTQFSLTAL 248
Query: 556 YI 561 YI Sbjct: 249 YI 250
>tr|A7SU16|A7SU16_NEMVE Predicted protein OS=Nematostella vectensis GN=v1g174335 PE=4 SV=1 Length = 245
Score = 76.6 bits (187), Expect = 8e-13 Identities = 40/130 (30%), Positives = 75/130 (57%) Frame = +1
Query: 133 EPSEALSQLKNDDYEELMIAMQNILYDDLRTENEKRDSVLLEEFEKSCEQEDRALSMMLE 312 EPSE D E++ M D+++ E + + ++L +++++ + E+ +L +E Sbjct: 104 EPSEEA------DINEILSVM-----DEIQQELMEEEKLILAQYDENQKFEEESLCAAIE 152
Query: 313 QLQNSEEDEVICPICKAGKLQQNQHLIFCSCGHLRLDVQHEKINLHFLRKRLEELLQQHH 492 L+ D+VICP+CK L QN+ +IFC CG +R+D + + I+L +++ +E + H+ Sbjct: 153 GLKT---DDVICPVCKRNPLHQNKQVIFCCCG-IRIDTETDCISLPYVKAEIESSVATHN 208
Query: 493 DSGCQSQPVF 522 GC S+P F Sbjct: 209 SEGCGSEPTF 218
>tr|B6LTX0|B6LTX0_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_212934 PE=4 SV=1 Length = 227
Score = 70.5 bits (171), Expect = 6e-11 Identities = 34/119 (28%), Positives = 68/119 (57%) Frame = +1
Query: 166 DDYEELMIAMQNILYDDLRTENEKRDSVLLEEFEKSCEQEDRALSMMLEQLQNSEEDEVI 345 DD + ++ M+ D++ E K + +L + + E+ A+ ++ +++D V Sbjct: 91 DDLDSILALME-----DIKQELLKEEHSILAQLDAEMRFEEEAMLATVDHHHGNDDDVVT 145
Query: 346 CPICKAGKLQQNQHLIFCSCGHLRLDVQHEKINLHFLRKRLEELLQQHHDSGCQSQPVF 522 CP+C + L QN+++IFC CG +R++ + + I LH +++RL E + +H + C +QP F Sbjct: 146 CPVCMSNPLLQNKNVIFCQCG-VRINTEQDCIGLHHVKQRLTECVTEHSER-CAAQPGF 202
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