BP920448 |
Clone id |
YMU001_000137_C01 |
Library |
YMU01 |
Length |
519 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000137_C01. |
Accession |
BP920448 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL2622Contig1 |
Sequence |
CTTCCGGGATGAGGATAGGGGCACATCAATGAAGCGCAAAAGGGCAGTACCATATGATGC TAGCACTATCTATGGATTGCAGAAAAAGAGGCGAAGGGGACGATGTGCAACTACTTTGCC TCTTGGTGTTGGTGTGCATGGCTTTTCGGCAAATGTAAATAATACAAGAGTAGAGCCTAT GGGCTACCAAAGTGATTGTGATTCATCCTCTTCTGTCATTTTAGACACAGATGAGGTTTC CCCTCTCGAACTTTATGAAGATCCATTGTGTCGAAGACCATTTTTGGATCTTAACCTTCC TCCCCCTGATGAGGATACAGAAGATGTTAAGCTAACACTCTTTTTGTAGTTGTGGTTTGC CTTGACGTTTCTTCCAGTGCTTTGTTCCTTGTCATCTAGTATGGCATGTGGAACCTTGTT ATGGCTTTCAAAGTGATCCTACTATTGCACAGATGATACTTGTAACTCGGGCATATGTTC AAAATGAATCATGTCTTTGAGATTGAGTGTAATCAAGTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O80339 |
Definition |
sp|O80339|ERF82_ARATH Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana |
Align length |
48 |
Score (bit) |
37.7 |
E-value |
0.032 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920448|Adiantum capillus-veneris mRNA, clone: YMU001_000137_C01. (519 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|O80339|ERF82_ARATH Ethylene-responsive transcription factor 3... 38 0.032 sp|Q9LDE4|ERF83_ARATH Ethylene-responsive transcription factor 7... 37 0.042 sp|Q9SXS8|ERF3_TOBAC Ethylene-responsive transcription factor 3 ... 35 0.21 sp|Q3TI53|SCHI1_MOUSE Schwannomin-interacting protein 1 OS=Mus m... 32 1.8 sp|Q9P0W5|SCHI1_HUMAN Schwannomin-interacting protein 1 OS=Homo ... 32 1.8 sp|Q13018|PLA2R_HUMAN Secretory phospholipase A2 receptor OS=Hom... 31 4.0 sp|P47245|NRDC_RAT Nardilysin OS=Rattus norvegicus GN=Nrd1 PE=2 ... 31 4.0 sp|Q8BHG1|NRDC_MOUSE Nardilysin OS=Mus musculus GN=Nrd1 PE=2 SV=1 31 4.0 sp|Q5R880|PLA2R_PONAB Secretory phospholipase A2 receptor OS=Pon... 30 5.2 sp|Q9ULF5|S39AA_HUMAN Zinc transporter ZIP10 OS=Homo sapiens GN=... 30 6.9 sp|Q60AY5|AROC_METCA Chorismate synthase OS=Methylococcus capsul... 30 8.8
>sp|O80339|ERF82_ARATH Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1 Length = 225
Score = 37.7 bits (86), Expect = 0.032 Identities = 23/48 (47%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Frame = +2
Query: 170 VEPMGYQSDCDSSSSVILDTDEVSPLELYEDPLCRRPF-LDLNLPPPD 310 V P SDCDSSSSVI D D+++ +P PF DLN PP D Sbjct: 164 VVPEDCHSDCDSSSSVIDDDDDIASSSRRRNP----PFQFDLNFPPLD 207
>sp|Q9LDE4|ERF83_ARATH Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1 Length = 244
Score = 37.4 bits (85), Expect = 0.042 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 1/85 (1%) Frame = +2
Query: 59 ASTIYGLQKKRRRGRCATTLPLGVGVHGFSANVNNTRVEPMGYQSDCDSSSSVILDTDEV 238 +ST+ R A + + +H V P SDCDSSSSVI D D++ Sbjct: 145 SSTVKSCSGPRPMEAAAASSSVAKPLHAIKRYPRTPPVAPEDCHSDCDSSSSVIDDGDDI 204
Query: 239 SPLELYEDPLCRRPF-LDLNLPPPD 310 + + PF DLN PP D Sbjct: 205 AS----SSSRRKTPFQFDLNFPPLD 225
>sp|Q9SXS8|ERF3_TOBAC Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1 Length = 225
Score = 35.0 bits (79), Expect = 0.21 Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 5/54 (9%) Frame = +2
Query: 170 VEPMGYQSDCDSSSSVILDTDEVSPLELYEDPLC----RRPFL-DLNLPPPDED 316 V P SDCDSSSSV+ D + D + R+P L DLNLPPP +D Sbjct: 159 VVPDDCHSDCDSSSSVVDHGDCEKENDNDNDNIASSSFRKPLLFDLNLPPPMDD 212
>sp|Q3TI53|SCHI1_MOUSE Schwannomin-interacting protein 1 OS=Mus musculus GN=Schip1 PE=1 SV=1 Length = 456
Score = 32.0 bits (71), Expect = 1.8 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 2/62 (3%) Frame = +2
Query: 146 SANVNNTRVEPMGYQSDCDSSSSVILDTDEVSPLELYED--PLCRRPFLDLNLPPPDEDT 319 S+ N+T+V P S+C SSSS D VS LE YE+ P+ ++ +D P D + Sbjct: 16 SSQSNSTKVTPC---SECKSSSSPGGSLDLVSALEDYEEPFPVYQKKVIDEWAPEEDGEE 72
Query: 320 ED 325 E+ Sbjct: 73 EE 74
>sp|Q9P0W5|SCHI1_HUMAN Schwannomin-interacting protein 1 OS=Homo sapiens GN=SCHIP1 PE=1 SV=1 Length = 487
Score = 32.0 bits (71), Expect = 1.8 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 2/62 (3%) Frame = +2
Query: 146 SANVNNTRVEPMGYQSDCDSSSSVILDTDEVSPLELYED--PLCRRPFLDLNLPPPDEDT 319 S+ N+T+V P S+C SSSS D VS LE YE+ P+ ++ +D P D + Sbjct: 44 SSQSNSTKVTPC---SECKSSSSPGGSLDLVSALEDYEEPFPVYQKKVIDEWAPEEDGEE 100
Query: 320 ED 325 E+ Sbjct: 101 EE 102
>sp|Q13018|PLA2R_HUMAN Secretory phospholipase A2 receptor OS=Homo sapiens GN=PLA2R1 PE=1 SV=2 Length = 1463
Score = 30.8 bits (68), Expect = 4.0 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 9/53 (16%) Frame = -3
Query: 163 IIYICRKAMHTNTKRQSSCTSS---------PSPLFLQSIDSASIIWYCPFAL 32 + YIC+KA H + +S C L+S D AS +YCP AL Sbjct: 497 LFYICKKAGHVLSDAESGCQEGWERHGGFCYKIDTVLRSFDQASSGYYCPPAL 549
>sp|P47245|NRDC_RAT Nardilysin OS=Rattus norvegicus GN=Nrd1 PE=2 SV=1 Length = 1161
Score = 30.8 bits (68), Expect = 4.0 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = +1
Query: 64 HYL-WIAEKEAKGTMCNYFASWCWCAWLFG 150 HY+ W+ E KG++ +Y CW LFG Sbjct: 470 HYISWLVGHEGKGSILSYLRKKCWALALFG 499
>sp|Q8BHG1|NRDC_MOUSE Nardilysin OS=Mus musculus GN=Nrd1 PE=2 SV=1 Length = 1161
Score = 30.8 bits (68), Expect = 4.0 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = +1
Query: 64 HYL-WIAEKEAKGTMCNYFASWCWCAWLFG 150 HY+ W+ E KG++ +Y CW LFG Sbjct: 470 HYISWLVGHEGKGSILSYLRKKCWALALFG 499
>sp|Q5R880|PLA2R_PONAB Secretory phospholipase A2 receptor OS=Pongo abelii GN=PLA2R1 PE=2 SV=2 Length = 1464
Score = 30.4 bits (67), Expect = 5.2 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 9/53 (16%) Frame = -3
Query: 163 IIYICRKAMHTNTKRQSSCTSS---------PSPLFLQSIDSASIIWYCPFAL 32 + Y+C+KA H + +S C L+S D AS +YCP AL Sbjct: 499 LFYVCKKAGHVLSDAESGCQEGWERHGGFCYKIDTVLRSFDQASSGYYCPPAL 551
>sp|Q9ULF5|S39AA_HUMAN Zinc transporter ZIP10 OS=Homo sapiens GN=SLC39A10 PE=1 SV=2 Length = 831
Score = 30.0 bits (66), Expect = 6.9 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%) Frame = -1
Query: 516 LITLNLKDMIHFEHMPELQVSSVQ**DHFESHN-KVPHAILDDKEQS-TGRNVKANH 352 ++ +N +D+ H +H+ L + +VQ HF SHN + H L+ + Q+ T + K NH Sbjct: 96 VVEINHEDLGH-DHVSHLDILAVQEGKHFHSHNHQHSHNHLNSENQTVTSVSTKRNH 151
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9PES8 |
Definition |
tr|A9PES8|A9PES8_POPTR Putative uncharacterized protein OS=Populus trichocarpa |
Align length |
49 |
Score (bit) |
40.4 |
E-value |
0.053 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920448|Adiantum capillus-veneris mRNA, clone: YMU001_000137_C01. (519 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9PES8|A9PES8_POPTR Putative uncharacterized protein OS=Popul... 40 0.053 tr|A7PXA1|A7PXA1_VITVI Chromosome chr12 scaffold_36, whole genom... 37 0.77 tr|Q7XR67|Q7XR67_ORYSJ Os04g0669200 protein OS=Oryza sativa subs... 35 1.7 tr|Q259P7|Q259P7_ORYSA H0818H01.4 protein (B0811B10.20 protein) ... 35 1.7 tr|A2XYS1|A2XYS1_ORYSI Putative uncharacterized protein OS=Oryza... 35 1.7 tr|Q2QDF5|Q2QDF5_GOSHI Ethylene-responsive element-binding facto... 35 2.2 tr|A9SW67|A9SW67_PHYPA Predicted protein OS=Physcomitrella paten... 35 2.2 tr|B6SZ49|B6SZ49_MAIZE Ethylene-responsive transcription factor ... 35 2.9 tr|B6QSX5|B6QSX5_PENMA Ankyrin repeat-containing protein, putati... 35 2.9 tr|Q5MJ54|Q5MJ54_PEA AT-rich element binding factor 2 OS=Pisum s... 34 3.8 tr|B7ZYT2|B7ZYT2_MAIZE Putative uncharacterized protein OS=Zea m... 33 6.5 tr|Q9VTH5|Q9VTH5_DROME CG6175 OS=Drosophila melanogaster GN=CG61... 33 8.5 tr|Q8MS46|Q8MS46_DROME RE07996p OS=Drosophila melanogaster GN=CG... 33 8.5 tr|B6K8R5|B6K8R5_TOXGO Putative uncharacterized protein OS=Toxop... 33 8.5
>tr|A9PES8|A9PES8_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 219
Score = 40.4 bits (93), Expect = 0.053 Identities = 24/49 (48%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = +2
Query: 170 VEPMGYQSDCDSSSSVILDTDEVSPLELYEDPLCRRPF-LDLNLPPPDE 313 V P SDCDSSSSV+ D D S LCR+P DLN PP D+ Sbjct: 159 VVPEDCHSDCDSSSSVVDDRDVASA----ASSLCRKPLPFDLNFPPLDQ 203
>tr|A7PXA1|A7PXA1_VITVI Chromosome chr12 scaffold_36, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00025959001 PE=4 SV=1 Length = 195
Score = 36.6 bits (83), Expect = 0.77 Identities = 24/46 (52%), Positives = 27/46 (58%) Frame = +2
Query: 188 QSDCDSSSSVILDTDEVSPLELYEDPLCRRPFLDLNLPPPDEDTED 325 QSDCDSSSSVI + D +L PF DLNL PP ED +D Sbjct: 145 QSDCDSSSSVIDECDG----DLTSSSRKPLPF-DLNLLPPSEDGDD 185
>tr|Q7XR67|Q7XR67_ORYSJ Os04g0669200 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0043A12.18 PE=4 SV=1 Length = 190
Score = 35.4 bits (80), Expect = 1.7 Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = +2
Query: 182 GYQSDCDSSSSVILDTDEVSPLELYEDPLCRRPFLDLNLPPP-DEDTEDV 328 G SDC SS+SV+ D D+ S + R DLNLPPP D D D+ Sbjct: 141 GCHSDCASSASVVDDADDASTVR------SRVAAFDLNLPPPLDRDHVDL 184
>tr|Q259P7|Q259P7_ORYSA H0818H01.4 protein (B0811B10.20 protein) OS=Oryza sativa GN=H0818H01.4 PE=4 SV=1 Length = 190
Score = 35.4 bits (80), Expect = 1.7 Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = +2
Query: 182 GYQSDCDSSSSVILDTDEVSPLELYEDPLCRRPFLDLNLPPP-DEDTEDV 328 G SDC SS+SV+ D D+ S + R DLNLPPP D D D+ Sbjct: 141 GCHSDCASSASVVDDADDASTVR------SRVAAFDLNLPPPLDRDHVDL 184
>tr|A2XYS1|A2XYS1_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_17852 PE=4 SV=1 Length = 184
Score = 35.4 bits (80), Expect = 1.7 Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = +2
Query: 182 GYQSDCDSSSSVILDTDEVSPLELYEDPLCRRPFLDLNLPPP-DEDTEDV 328 G SDC SS+SV+ D D+ S + R DLNLPPP D D D+ Sbjct: 135 GCHSDCASSASVVDDADDASTVR------SRVAAFDLNLPPPLDRDHVDL 178
>tr|Q2QDF5|Q2QDF5_GOSHI Ethylene-responsive element-binding factor OS=Gossypium hirsutum GN=ERF3 PE=2 SV=1 Length = 225
Score = 35.0 bits (79), Expect = 2.2 Identities = 23/49 (46%), Positives = 28/49 (57%) Frame = +2
Query: 167 RVEPMGYQSDCDSSSSVILDTDEVSPLELYEDPLCRRPFLDLNLPPPDE 313 R+ P +SDCDSSSSV+ D D+ + L PF DLN PP DE Sbjct: 173 RMAPEDCRSDCDSSSSVVDDGDDDNVSSSRRKIL---PF-DLNFPPLDE 217
>tr|A9SW67|A9SW67_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_189022 PE=4 SV=1 Length = 300
Score = 35.0 bits (79), Expect = 2.2 Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 7/64 (10%) Frame = +2
Query: 134 VHGFSANVNNTRVEPMGYQSDCDSSSSVILDTD---EVSPLELYEDPLCRR---PF-LDL 292 V G + + E SDCDSSSSVIL+++ P P+ RR PF LDL Sbjct: 232 VLGMEQHASEITPETRACHSDCDSSSSVILNSEAACATPPTPHDAKPVMRRTPYPFLLDL 291
Query: 293 NLPP 304 N PP Sbjct: 292 NQPP 295
>tr|B6SZ49|B6SZ49_MAIZE Ethylene-responsive transcription factor 3 OS=Zea mays PE=2 SV=1 Length = 172
Score = 34.7 bits (78), Expect = 2.9 Identities = 19/40 (47%), Positives = 24/40 (60%) Frame = +2
Query: 188 QSDCDSSSSVILDTDEVSPLELYEDPLCRRPFLDLNLPPP 307 +SDC SS+SV+ D D+ S + RP LDLNLP P Sbjct: 123 RSDCASSASVVDDGDDASTVR-------SRPALDLNLPAP 155
>tr|B6QSX5|B6QSX5_PENMA Ankyrin repeat-containing protein, putative OS=Penicillium marneffei ATCC 18224 GN=PMAA_003010 PE=4 SV=1 Length = 1431
Score = 34.7 bits (78), Expect = 2.9 Identities = 18/47 (38%), Positives = 29/47 (61%) Frame = +2
Query: 191 SDCDSSSSVILDTDEVSPLELYEDPLCRRPFLDLNLPPPDEDTEDVK 331 +D +S++V DTD+ S +E +DP+ P L+ ++ P E TE VK Sbjct: 1331 TDESASTTVTFDTDQTSLMETQDDPI--NPELNEDIKIPSEQTESVK 1375
>tr|Q5MJ54|Q5MJ54_PEA AT-rich element binding factor 2 OS=Pisum sativum GN=ATF2 PE=2 SV=1 Length = 218
Score = 34.3 bits (77), Expect = 3.8 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = +2
Query: 170 VEPMGYQSDCDSSSSVILDTDEVSPLELYEDPLCRRPF-LDLNLPPPDE 313 V P +SDCDSSSSV+ D D + R+P DLN PP +E Sbjct: 152 VAPGDCRSDCDSSSSVVDDADNDNAASSTMLSFKRQPLPFDLNAPPLEE 200
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