BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920449|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_C02.
         (428 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O95602|RPA1_HUMAN DNA-directed RNA polymerase I subunit RPA1 ...    30   5.3  
sp|A1L0Z0|MED1_XENTR Mediator of RNA polymerase II transcription...    30   5.3  
sp|Q8JZL1|I17RD_MOUSE Interleukin-17 receptor D OS=Mus musculus ...    29   7.0  
sp|Q80YW0|CYH4_MOUSE Cytohesin-4 OS=Mus musculus GN=Cyth4 PE=2 SV=1    29   9.1  

>sp|O95602|RPA1_HUMAN DNA-directed RNA polymerase I subunit RPA1
            OS=Homo sapiens GN=POLR1A PE=1 SV=2
          Length = 1720

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -1

Query: 362  YHVPMCQGHVHDVANR-DPKKCIHH 291
            Y V M   H+H+V +R DPKK +HH
Sbjct: 1044 YEVIMKSQHLHEVLSRADPKKALHH 1068


>sp|A1L0Z0|MED1_XENTR Mediator of RNA polymerase II transcription
           subunit 1 OS=Xenopus tropicalis GN=med1 PE=2 SV=1
          Length = 1573

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = -1

Query: 203 PYIARAPAQA----EVYPHVDLHETANLCKQILFRTTDACVMQSIDILSN 66
           P+I  AP+Q      VY     H  AN+ + +   +TDA +    DILS+
Sbjct: 719 PHITPAPSQCGTPPNVYQQAIPHTQANMQRMVRIPSTDAIIPDVTDILSD 768


>sp|Q8JZL1|I17RD_MOUSE Interleukin-17 receptor D OS=Mus musculus
           GN=Il17rd PE=1 SV=1
          Length = 738

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 75  NVNGLHHTSISGPKQDLLAEIC-CLM*IDMWIYFSLCRSTSYVWTI 209
           N +G +H ++       L + C C + +D+W  FSLCR     W I
Sbjct: 364 NKDGQNHMNVVQCFAYFLQDFCGCEVALDLWEDFSLCREGQREWAI 409


>sp|Q80YW0|CYH4_MOUSE Cytohesin-4 OS=Mus musculus GN=Cyth4 PE=2 SV=1
          Length = 393

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 134 LCKQILFRTTDACVMQSIDILSNNTQIH 51
           LC   +FR+TD C + S  ++  NT +H
Sbjct: 173 LCNPGVFRSTDTCYVLSFSVIMLNTGLH 200

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920449|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_C02.
         (428 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9PL55|Q9PL55_CHLMU Putative uncharacterized protein OS=Chlam...    33   7.2  
tr|Q6I669|Q6I669_CITLA Transcriptional adaptor ADA2a (Fragment) ...    33   9.4  

>tr|Q9PL55|Q9PL55_CHLMU Putative uncharacterized protein
           OS=Chlamydia muridarum GN=TC_0253 PE=4 SV=1
          Length = 490

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
 Frame = -3

Query: 390 PTKESSI----TKVSCTDVPRSRTRCREQGPEKMHTPLLE*GWPNAFS---QNVLRIYPD 232
           PT +SSI    TK S   +P   ++  E   + +  PL   G P+ FS   QN++R  P 
Sbjct: 132 PTTKSSIFSLQTKASSQSLPSLSSK--EPSTQPLARPLAMQGQPSLFSHSEQNIVRAVPS 189

Query: 231 NNLPHHR 211
           + +PH+R
Sbjct: 190 SIVPHNR 196


>tr|Q6I669|Q6I669_CITLA Transcriptional adaptor ADA2a (Fragment)
           OS=Citrullus lanatus PE=2 SV=1
          Length = 156

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 83  WIASHKHQWSETGFACRDLLSHVDRHV 163
           WI+S  H W  +GFA  DLLS ++R +
Sbjct: 88  WISSSVHDWDISGFAGADLLSEMERQL 114