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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920458
Clone id YMU001_000137_C11
Library
Length 526
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000137_C11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTTAGGACCTTAGCCACGAATAGCCAGAGATGCGTGCAGACAAAACAGAAATTATAGCGT
CCAACCCAAGGCCACGACCAAATGTTCAGGCCCTCCAATCGAGCAGGGATTGCAAGCAAA
GTGGAGGATTTAAGTTCTTAAGAAGAGCCGTGTGAGGCCTATAGCTCATGCACAGTTCAG
AAACCGAGCCCTAACAGTAATGGTGCGGTTTAGGCTAACACTTATGTATTAGCTAGTTAT
TAATTGGAAGCAGGCAGGATGATGATGAATTATGATCAGTCTAAACCTTCAACCTCATTT
AACATAGCAAATGAAGGTCGAAAGTGGTTAGAAGAGAAGCTTCTATGGGGGAGCCGTTAA
AGTGGTTCCTGTCTACGCCCTGGAGGAGACTACGCTGACCCTTATAGCGATAGAAAATAC
GTACTCGATTCTCTGCGCCCAGAGAACGCTATGCGTTCTCCATCTTCGCGGCGCCCTCGC
TTTAGTTTTAGAAAGCGCTTTGCCCTTTTCAAAGTGTGGCACCCTT
■■Homology search results ■■ -
sp_hit_id P26859
Definition sp|P26859|RM02_MARPO 60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha
Align length 132
Score (bit) 50.8
E-value 4.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920458|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_C11.
         (526 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P26859|RM02_MARPO 60S ribosomal protein L2, mitochondrial OS=...    51   4e-06
sp|P93311|RM02_ARATH 60S ribosomal protein L2, mitochondrial OS=...    40   0.007
sp|P92812|RM02_ORYSJ 60S ribosomal protein L2, mitochondrial OS=...    36   0.13 
sp|Q2F969|RM02_ORYSI 60S ribosomal protein L2, mitochondrial OS=...    36   0.13 
sp|P0C8K6|RM02_ORYSA 60S ribosomal protein L2, mitochondrial OS=...    36   0.13 

>sp|P26859|RM02_MARPO 60S ribosomal protein L2, mitochondrial
           OS=Marchantia polymorpha GN=RPL2 PE=3 SV=2
          Length = 501

 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 18/132 (13%)
 Frame = +1

Query: 91  PSNRAGIASKVEDLSS*EEPCEAYSSCTVQKPSPNSNGAV*AN------------TYVLA 234
           P  R G+     D+   +   E     T+ + +P +  AV  +            TY+LA
Sbjct: 228 PKARNGLMISAHDIGKKDRRPEMAGPHTIPEHAPRALHAVGPSGSGRVLRTSEPFTYILA 287

Query: 235 SY*LEAGRMMMNYDQSKPSTSFNI------ANEGRKWLEEKLLWGSR*SGSCLRPGGDYA 396
           S  LE G  +MN+  SKPST  N       AN+      E+  W S+   + L P GDYA
Sbjct: 288 SENLEVGNTVMNFHGSKPSTLLNYHQPSQKANDPSGLRVEETAWDSQ---AWLHPRGDYA 344

Query: 397 DPYSDRKYVLDS 432
              S+ KY+LDS
Sbjct: 345 S--SENKYILDS 354


>sp|P93311|RM02_ARATH 60S ribosomal protein L2, mitochondrial
           OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1
          Length = 349

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 18/26 (69%), Positives = 23/26 (88%)
 Frame = +1

Query: 220 TYVLASY*LEAGRMMMNYDQSKPSTS 297
           TY++AS+ LEAG+M+MN D SKPSTS
Sbjct: 307 TYIIASHQLEAGKMVMNCDWSKPSTS 332


>sp|P92812|RM02_ORYSJ 60S ribosomal protein L2, mitochondrial
           OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2
          Length = 502

 Score = 35.8 bits (81), Expect = 0.13
 Identities = 17/26 (65%), Positives = 21/26 (80%)
 Frame = +1

Query: 220 TYVLASY*LEAGRMMMNYDQSKPSTS 297
           TY+LAS+ LEAG M++N D SKPS S
Sbjct: 281 TYILASHQLEAGNMVINCDCSKPSKS 306



 Score = 30.8 bits (68), Expect = 4.1
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -2

Query: 468 RRWRTHSVLWAQRIE 424
           R+WRTH VLWA RI+
Sbjct: 169 RKWRTHCVLWAHRIK 183


>sp|Q2F969|RM02_ORYSI 60S ribosomal protein L2, mitochondrial
           OS=Oryza sativa subsp. indica GN=RPL2 PE=2 SV=2
          Length = 502

 Score = 35.8 bits (81), Expect = 0.13
 Identities = 17/26 (65%), Positives = 21/26 (80%)
 Frame = +1

Query: 220 TYVLASY*LEAGRMMMNYDQSKPSTS 297
           TY+LAS+ LEAG M++N D SKPS S
Sbjct: 281 TYILASHQLEAGNMVINCDCSKPSKS 306



 Score = 30.8 bits (68), Expect = 4.1
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -2

Query: 468 RRWRTHSVLWAQRIE 424
           R+WRTH VLWA RI+
Sbjct: 169 RKWRTHCVLWAHRIK 183


>sp|P0C8K6|RM02_ORYSA 60S ribosomal protein L2, mitochondrial
           OS=Oryza sativa GN=RPL2 PE=2 SV=1
          Length = 502

 Score = 35.8 bits (81), Expect = 0.13
 Identities = 17/26 (65%), Positives = 21/26 (80%)
 Frame = +1

Query: 220 TYVLASY*LEAGRMMMNYDQSKPSTS 297
           TY+LAS+ LEAG M++N D SKPS S
Sbjct: 281 TYILASHQLEAGNMVINCDCSKPSKS 306



 Score = 30.8 bits (68), Expect = 4.1
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -2

Query: 468 RRWRTHSVLWAQRIE 424
           R+WRTH VLWA RI+
Sbjct: 169 RKWRTHCVLWAHRIK 183
tr_hit_id Q1XGA1
Definition tr|Q1XGA1|Q1XGA1_PHYPA Ribosomal protein L2 OS=Physcomitrella patens
Align length 93
Score (bit) 48.9
E-value 0.0002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920458|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_C11.
         (526 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1XGA1|Q1XGA1_PHYPA Ribosomal protein L2 OS=Physcomitrella pa...    49   2e-04
tr|A5BK62|A5BK62_VITVI Putative uncharacterized protein OS=Vitis...    42   0.015
tr|Q6YSN2|Q6YSN2_BRANA Ribosomal protein L2 OS=Brassica napus GN...    40   0.072
tr|Q5M9S7|Q5M9S7_TOBAC Ribosomal protein L2 OS=Nicotiana tabacum...    40   0.072
tr|Q40600|Q40600_OENBE 70s mitochondrial ribosomal protein L2 OS...    40   0.072
tr|B6VJV4|B6VJV4_VITVI Ribosomal protein L2 OS=Vitis vinifera GN...    40   0.072
tr|B0BLF2|B0BLF2_CYCTA Ribosomal protein L2 OS=Cycas taitungensi...    37   0.80 
tr|Q5MF15|Q5MF15_ZAMFL Ribosomal protein L2 (Fragment) OS=Zamia ...    34   5.2  

>tr|Q1XGA1|Q1XGA1_PHYPA Ribosomal protein L2 OS=Physcomitrella
           patens GN=rpl2 PE=4 SV=1
          Length = 463

 Score = 48.9 bits (115), Expect = 2e-04
 Identities = 36/93 (38%), Positives = 47/93 (50%), Gaps = 22/93 (23%)
 Frame = +1

Query: 220 TYVLASY*LEAGRMMMNYDQSKPSTSF----------------------NIANEGRKWLE 333
           TY+LAS  LEAG+ +MN D SKPSTSF                      +  NEG++ L 
Sbjct: 226 TYILASDQLEAGKTVMNCDWSKPSTSFDQHQSSHNLLAHNDLRFQNHFVHTTNEGQRSLR 285

Query: 334 EKLLWGSR*SGSCLRPGGDYADPYSDRKYVLDS 432
            +       + S LRPGG+YA   S+ K +LDS
Sbjct: 286 VEEPTRRSQAASGLRPGGNYAS--SENKNILDS 316


>tr|A5BK62|A5BK62_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_029794 PE=4 SV=1
          Length = 336

 Score = 42.4 bits (98), Expect = 0.015
 Identities = 19/27 (70%), Positives = 24/27 (88%)
 Frame = +1

Query: 217 NTYVLASY*LEAGRMMMNYDQSKPSTS 297
           NTY++AS+ LEAG+M+MN D SKPSTS
Sbjct: 298 NTYIIASHQLEAGKMVMNCDWSKPSTS 324


>tr|Q6YSN2|Q6YSN2_BRANA Ribosomal protein L2 OS=Brassica napus
           GN=rpl2 PE=4 SV=1
          Length = 349

 Score = 40.0 bits (92), Expect = 0.072
 Identities = 18/26 (69%), Positives = 23/26 (88%)
 Frame = +1

Query: 220 TYVLASY*LEAGRMMMNYDQSKPSTS 297
           TY++AS+ LEAG+M+MN D SKPSTS
Sbjct: 307 TYIIASHQLEAGKMVMNCDWSKPSTS 332


>tr|Q5M9S7|Q5M9S7_TOBAC Ribosomal protein L2 OS=Nicotiana tabacum
           GN=rpl2 PE=4 SV=1
          Length = 331

 Score = 40.0 bits (92), Expect = 0.072
 Identities = 18/26 (69%), Positives = 23/26 (88%)
 Frame = +1

Query: 220 TYVLASY*LEAGRMMMNYDQSKPSTS 297
           TY++AS+ LEAG+M+MN D SKPSTS
Sbjct: 294 TYIIASHQLEAGKMVMNCDWSKPSTS 319


>tr|Q40600|Q40600_OENBE 70s mitochondrial ribosomal protein L2
           OS=Oenothera bertiana GN=rp12 PE=4 SV=1
          Length = 332

 Score = 40.0 bits (92), Expect = 0.072
 Identities = 18/26 (69%), Positives = 23/26 (88%)
 Frame = +1

Query: 220 TYVLASY*LEAGRMMMNYDQSKPSTS 297
           TY++AS+ LEAG+M+MN D SKPSTS
Sbjct: 295 TYIIASHQLEAGKMVMNCDWSKPSTS 320


>tr|B6VJV4|B6VJV4_VITVI Ribosomal protein L2 OS=Vitis vinifera
           GN=rpl2 PE=4 SV=1
          Length = 334

 Score = 40.0 bits (92), Expect = 0.072
 Identities = 18/26 (69%), Positives = 23/26 (88%)
 Frame = +1

Query: 220 TYVLASY*LEAGRMMMNYDQSKPSTS 297
           TY++AS+ LEAG+M+MN D SKPSTS
Sbjct: 297 TYIIASHQLEAGKMVMNCDWSKPSTS 322


>tr|B0BLF2|B0BLF2_CYCTA Ribosomal protein L2 OS=Cycas taitungensis
           GN=rpl2 PE=4 SV=1
          Length = 477

 Score = 36.6 bits (83), Expect = 0.80
 Identities = 17/28 (60%), Positives = 21/28 (75%)
 Frame = +1

Query: 220 TYVLASY*LEAGRMMMNYDQSKPSTSFN 303
           TY+ A +   AG+M+MN D SKPSTSFN
Sbjct: 250 TYISAGHQSGAGKMVMNCDWSKPSTSFN 277



 Score = 33.9 bits (76), Expect = 5.2
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = -2

Query: 468 RRWRTHSVLWAQRIE 424
           RRWRTHSVLWA RI+
Sbjct: 189 RRWRTHSVLWAHRIK 203


>tr|Q5MF15|Q5MF15_ZAMFL Ribosomal protein L2 (Fragment) OS=Zamia
           floridana GN=rpl2 PE=4 SV=1
          Length = 188

 Score = 33.9 bits (76), Expect = 5.2
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = -2

Query: 468 RRWRTHSVLWAQRIE 424
           RRWRTHSVLWA RI+
Sbjct: 151 RRWRTHSVLWAHRIK 165