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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920465
Clone id YMU001_000137_D07
Library
Length 439
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000137_D07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATATACACTCCCAAAGAACGCAATTGGCAAAGTCGAAAATTTCGACCTGATGCGGAATGA
GCCAATCTAACCATCATGGCTCGCAAGGCATAAAACTATTACCAGCGCTGTTGCCGAATA
TTACCACAAGGCCACAGATCACCCCATCTTGACCGGCGAGCTTGGAAGTGCAGAACTCTG
TTATCGGTTTTACTCACAGTAATCCGATCCATTAGGCCTTTCGTCCCATTTCGGTTAGCG
GAGCAGCATACATCAAGAACCACACGTTTACCCCTTCGTGCTGGGTGGAAAAGAATCCTT
CCCCAATCGCTTCCAAAATCAGCTATGGCTCCAGCGTCCTCATCCTCTGTTTCCTCGTCC
TCTTCATAGAACTCTAGCTCTTCATCACTTACTTCCCCACAGTCACTCTCTGCATCGCTA
TCTTCGCTAGCTTCATCGT
■■Homology search results ■■ -
sp_hit_id P36056
Definition sp|P36056|RT22_YEAST 37S ribosomal protein S22, mitochondrial OS=Saccharomyces cerevisiae
Align length 63
Score (bit) 42.7
E-value 0.0007
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920465|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_D07.
         (439 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P36056|RT22_YEAST 37S ribosomal protein S22, mitochondrial OS...    43   7e-04
sp|Q86ZU7|CO112_SCHPO Rsm22-cox11 tandem protein 2, mitochondria...    42   0.001
sp|Q9UTM2|CO111_SCHPO Rsm22-cox11 tandem protein 1, mitochondria...    42   0.001
sp|P39393|YJIV_ECOLI Putative uncharacterized protein yjiV OS=Es...    29   9.8  
sp|Q822L8|SYI_CHLCV Isoleucyl-tRNA synthetase OS=Chlamydophila c...    29   9.8  
sp|Q9FJQ5|EIL5_ARATH Putative ETHYLENE INSENSITIVE 3-like 5 prot...    29   9.8  

>sp|P36056|RT22_YEAST 37S ribosomal protein S22, mitochondrial
           OS=Saccharomyces cerevisiae GN=RSM22 PE=1 SV=1
          Length = 628

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 20/63 (31%), Positives = 38/63 (60%)
 Frame = -3

Query: 320 DFGSDWGRILFHPARRGKRVVLDVCCSANRNGTKGLMDRITVSKTDNRVLHFQARRSRWG 141
           D  + W RI+  P +R   V++D+C  +      G +++ TVS++ ++ ++  AR+S+ G
Sbjct: 489 DTQNSWPRIINDPVKRKGHVMMDLCAPS------GELEKWTVSRSFSKQIYHDARKSKKG 542

Query: 140 DLW 132
           DLW
Sbjct: 543 DLW 545


>sp|Q86ZU7|CO112_SCHPO Rsm22-cox11 tandem protein 2, mitochondrial
           OS=Schizosaccharomyces pombe GN=cos1102 PE=1 SV=2
          Length = 753

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 22/60 (36%), Positives = 34/60 (56%)
 Frame = -3

Query: 308 DWGRILFHPARRGKRVVLDVCCSANRNGTKGLMDRITVSKTDNRVLHFQARRSRWGDLWP 129
           +W RI+  P +R   V++DVC S  R      + R  V K+  ++ +  AR+S WGDL+P
Sbjct: 410 NWPRIIRPPLKRDGHVIIDVCDSDAR------LRRNIVPKSQGKLAYRLARKSAWGDLFP 463


>sp|Q9UTM2|CO111_SCHPO Rsm22-cox11 tandem protein 1, mitochondrial
           OS=Schizosaccharomyces pombe GN=cox1101 PE=1 SV=2
          Length = 753

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 22/60 (36%), Positives = 34/60 (56%)
 Frame = -3

Query: 308 DWGRILFHPARRGKRVVLDVCCSANRNGTKGLMDRITVSKTDNRVLHFQARRSRWGDLWP 129
           +W RI+  P +R   V++DVC S  R      + R  V K+  ++ +  AR+S WGDL+P
Sbjct: 410 NWPRIIRPPLKRDGHVIIDVCDSDAR------LRRNIVPKSQGKLAYRLARKSAWGDLFP 463


>sp|P39393|YJIV_ECOLI Putative uncharacterized protein yjiV
           OS=Escherichia coli (strain K12) GN=yjiV PE=5 SV=3
          Length = 906

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 121 LPQGHRSPHLDRRAWKCRTLLSVLLTVIRSIRPFVPFRLAEQH 249
           LP+ H +  L   AW C     +L T  + + P++P  ++ +H
Sbjct: 493 LPKEHMTFSLITDAWICPVTNKILDTAFKGLTPYLPTHISFEH 535


>sp|Q822L8|SYI_CHLCV Isoleucyl-tRNA synthetase OS=Chlamydophila
           caviae GN=ileS PE=3 SV=1
          Length = 1043

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 19/45 (42%), Positives = 23/45 (51%)
 Frame = +1

Query: 97  YYQRCCRILPQGHRSPHLDRRAWKCRTLLSVLLTVIRSIRPFVPF 231
           Y +RC R   +   +P  DRRA    TL  VL    R I PF+PF
Sbjct: 721 YIRRCRRRFWESEDTP--DRRA-AFATLYEVLTVFCRVIAPFIPF 762


>sp|Q9FJQ5|EIL5_ARATH Putative ETHYLENE INSENSITIVE 3-like 5 protein
           OS=Arabidopsis thaliana GN=EIL5 PE=2 SV=1
          Length = 557

 Score = 28.9 bits (63), Expect = 9.8
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = +1

Query: 124 PQGHRSPHLDRRAWKCRTLLSVLLTVIRSIRPFVP--FRLAEQHTSRTTRLPLRA--GWK 291
           P  +R PH  R+AWK    +SVL  VI+ + P +    RLA Q      ++  +    W 
Sbjct: 240 PPPYRKPHDLRKAWK----VSVLAAVIKHMSPNLERVRRLARQSKCLQDKMMAKETDTWS 295

Query: 292 RILPQ 306
           R+L Q
Sbjct: 296 RVLNQ 300
tr_hit_id A7QU34
Definition tr|A7QU34|A7QU34_VITVI Chromosome chr2 scaffold_176, whole genome shotgun sequence OS=Vitis vinifera
Align length 59
Score (bit) 83.6
E-value 5.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920465|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_D07.
         (439 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QU34|A7QU34_VITVI Chromosome chr2 scaffold_176, whole genom...    84   5e-15
tr|Q6YSV0|Q6YSV0_ORYSJ Putative uncharacterized protein P0680C01...    82   2e-14
tr|A9TFK5|A9TFK5_PHYPA Predicted protein OS=Physcomitrella paten...    80   5e-14
tr|Q9SGV5|Q9SGV5_ARATH F1N19.17 OS=Arabidopsis thaliana PE=4 SV=1      76   1e-12
tr|Q8GW63|Q8GW63_ARATH Putative uncharacterized protein At1g6460...    76   1e-12
tr|Q4PGH8|Q4PGH8_USTMA Putative uncharacterized protein OS=Ustil...    49   1e-04
tr|A8N361|A8N361_COPC7 Putative uncharacterized protein OS=Copri...    48   3e-04
tr|A0DFF7|A0DFF7_PARTE Chromosome undetermined scaffold_49, whol...    46   8e-04
tr|B0CRQ8|B0CRQ8_LACBS Predicted protein OS=Laccaria bicolor (st...    46   8e-04
tr|Q012I7|Q012I7_OSTTA Mitochondrial/chloroplast ribosome small ...    46   0.001
tr|A2QNP8|A2QNP8_ASPNC Similarity: the predicted ORF is twice as...    46   0.001
tr|A4S254|A4S254_OSTLU Predicted protein OS=Ostreococcus lucimar...    45   0.001
tr|A7EV55|A7EV55_SCLS1 Putative uncharacterized protein OS=Scler...    45   0.001
tr|B6GYQ6|B6GYQ6_PENCH Pc12g16260 protein OS=Penicillium chrysog...    45   0.002
tr|A6RKR3|A6RKR3_BOTFB Putative uncharacterized protein OS=Botry...    45   0.002
tr|Q5KAV0|Q5KAV0_CRYNE 3-methyl-2-oxobutanoate hydroxymethyltran...    45   0.002
tr|Q5B4B7|Q5B4B7_EMENI Putative uncharacterized protein OS=Emeri...    45   0.002
tr|Q0CH88|Q0CH88_ASPTN Putative uncharacterized protein OS=Asper...    44   0.003
tr|Q54DG6|Q54DG6_DICDI Putative uncharacterized protein OS=Dicty...    44   0.004
tr|Q4UGG5|Q4UGG5_THEAN Putative uncharacterized protein OS=Theil...    44   0.004
tr|Q2U0B3|Q2U0B3_ASPOR Mitochondrial/chloroplast ribosome small ...    44   0.005
tr|B8NAW0|B8NAW0_ASPFL 37S ribosomal protein Rsm22 OS=Aspergillu...    44   0.005
tr|Q2KFP4|Q2KFP4_MAGGR Putative uncharacterized protein OS=Magna...    43   0.007
tr|Q1E6G9|Q1E6G9_COCIM Putative uncharacterized protein OS=Cocci...    43   0.007
tr|A4RBI8|A4RBI8_MAGGR Putative uncharacterized protein OS=Magna...    43   0.007
tr|B5VM09|B5VM09_YEAS6 YKL155Cp-like protein OS=Saccharomyces ce...    43   0.009
tr|B3LQU7|B3LQU7_YEAS1 Mitochondrial ribosome small subunit comp...    43   0.009
tr|A6ZZG8|A6ZZG8_YEAS7 Mitochondrial ribosomal small subunit com...    43   0.009
tr|A1CFA5|A1CFA5_ASPCL 37S ribosomal protein Rsm22 OS=Aspergillu...    43   0.009
tr|B6QQS2|B6QQS2_PENMA 37S ribosomal protein Rsm22 OS=Penicilliu...    42   0.015

>tr|A7QU34|A7QU34_VITVI Chromosome chr2 scaffold_176, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00006680001
           PE=4 SV=1
          Length = 534

 Score = 83.6 bits (205), Expect = 5e-15
 Identities = 34/59 (57%), Positives = 45/59 (76%)
 Frame = -3

Query: 305 WGRILFHPARRGKRVVLDVCCSANRNGTKGLMDRITVSKTDNRVLHFQARRSRWGDLWP 129
           WGRI+F P RRGK+V +DVC + NR G++G  DR+ ++++ N  LH QARRS WGDLWP
Sbjct: 475 WGRIIFTPVRRGKQVAMDVCRATNREGSEGSFDRVVITQSKNPTLHRQARRSLWGDLWP 533


>tr|Q6YSV0|Q6YSV0_ORYSJ Putative uncharacterized protein P0680C01.9
           OS=Oryza sativa subsp. japonica GN=P0680C01.9 PE=4 SV=1
          Length = 711

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 32/65 (49%), Positives = 47/65 (72%)
 Frame = -3

Query: 323 ADFGSDWGRILFHPARRGKRVVLDVCCSANRNGTKGLMDRITVSKTDNRVLHFQARRSRW 144
           AD G  WGRI++ P RRG++V LDVC +  R+ ++G  +R+ ++++ N  +H QARRS W
Sbjct: 646 ADLGGGWGRIIYSPIRRGRQVQLDVCRATKRDASEGAFERVVITQSKNPTMHHQARRSLW 705

Query: 143 GDLWP 129
           GDLWP
Sbjct: 706 GDLWP 710


>tr|A9TFK5|A9TFK5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_194610 PE=4 SV=1
          Length = 500

 Score = 80.1 bits (196), Expect = 5e-14
 Identities = 36/67 (53%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
 Frame = -3

Query: 323 ADFGSDWGRILFHPARRGKRVVLDVCCSANRNGTKGLMDRITVSKTDNRV-LHFQARRSR 147
           AD GS W RI+  P RRG+R +LD+C +  R+G++G + RI  S+  N   LH QAR+SR
Sbjct: 434 ADVGSGWARIVRTPIRRGRRTILDLCAATERDGSRGEVTRIICSRKGNAAPLHPQARKSR 493

Query: 146 WGDLWPC 126
           WGDLWPC
Sbjct: 494 WGDLWPC 500


>tr|Q9SGV5|Q9SGV5_ARATH F1N19.17 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 555

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 31/65 (47%), Positives = 44/65 (67%)
 Frame = -3

Query: 323 ADFGSDWGRILFHPARRGKRVVLDVCCSANRNGTKGLMDRITVSKTDNRVLHFQARRSRW 144
           A  G  WGRI+F P R+GK+V LD+C     +G++G  +R  ++K+ N  LH QA++S W
Sbjct: 461 ASVGGGWGRIIFPPFRKGKQVTLDMCVPTKEDGSEGAFERRVITKSKNPDLHLQAKKSFW 520

Query: 143 GDLWP 129
           GDLWP
Sbjct: 521 GDLWP 525


>tr|Q8GW63|Q8GW63_ARATH Putative uncharacterized protein
           At1g64600/F1N19_16 (At1g64600) OS=Arabidopsis thaliana
           GN=At1g64600/F1N19_16 PE=2 SV=1
          Length = 537

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 31/65 (47%), Positives = 44/65 (67%)
 Frame = -3

Query: 323 ADFGSDWGRILFHPARRGKRVVLDVCCSANRNGTKGLMDRITVSKTDNRVLHFQARRSRW 144
           A  G  WGRI+F P R+GK+V LD+C     +G++G  +R  ++K+ N  LH QA++S W
Sbjct: 443 ASVGGGWGRIIFPPFRKGKQVTLDMCVPTKEDGSEGAFERRVITKSKNPDLHLQAKKSFW 502

Query: 143 GDLWP 129
           GDLWP
Sbjct: 503 GDLWP 507


>tr|Q4PGH8|Q4PGH8_USTMA Putative uncharacterized protein OS=Ustilago
           maydis GN=UM00785.1 PE=4 SV=1
          Length = 977

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 21/59 (35%), Positives = 35/59 (59%)
 Frame = -3

Query: 305 WGRILFHPARRGKRVVLDVCCSANRNGTKGLMDRITVSKTDNRVLHFQARRSRWGDLWP 129
           W R++  P ++G  V LD CC+       G ++R T+SK   +  +  AR+++WGDL+P
Sbjct: 734 WPRLIRSPLKKGGHVTLDACCAT------GNIERFTISKACGKQAYQDARKAKWGDLFP 786


>tr|A8N361|A8N361_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_00485 PE=4 SV=1
          Length = 590

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 21/59 (35%), Positives = 36/59 (61%)
 Frame = -3

Query: 305 WGRILFHPARRGKRVVLDVCCSANRNGTKGLMDRITVSKTDNRVLHFQARRSRWGDLWP 129
           W R++F P ++   V+LD C S      +G + R+T+ K+  +  ++ AR+S WGDL+P
Sbjct: 462 WPRLVFPPMKKSGHVILDSCTS------EGKIVRMTIPKSQGKQPYYDARKSAWGDLFP 514


>tr|A0DFF7|A0DFF7_PARTE Chromosome undetermined scaffold_49, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00016587001 PE=4 SV=1
          Length = 507

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
 Frame = -3

Query: 329 AIADFGSDWGRILFHPARRGKRVVLDVCCSANRNGTKGLMDRITVSKTDNRV-LHFQARR 153
           A+   G DW RI F P +RGK ++LD+C        +G ++R  V+K+  +   +++A+ 
Sbjct: 425 ALVQEGQDWPRITFDPLKRGKHLILDMCTD------QGTLERRIVAKSHGKEGGYYEAKH 478

Query: 152 SRWGDLW 132
              GDLW
Sbjct: 479 LNGGDLW 485


>tr|B0CRQ8|B0CRQ8_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_301257 PE=4 SV=1
          Length = 633

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 18/59 (30%), Positives = 36/59 (61%)
 Frame = -3

Query: 305 WGRILFHPARRGKRVVLDVCCSANRNGTKGLMDRITVSKTDNRVLHFQARRSRWGDLWP 129
           W R++F P ++   ++LD C +      +G + R+T+ K+  +  ++ AR+S WGD++P
Sbjct: 513 WPRLVFPPMKKSGHIILDSCTA------EGKIMRMTIPKSQGKQAYYDARKSTWGDIFP 565


>tr|Q012I7|Q012I7_OSTTA Mitochondrial/chloroplast ribosome small
           subunit component (ISS) OS=Ostreococcus tauri
           GN=Ot09g00340 PE=4 SV=1
          Length = 692

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
 Frame = -3

Query: 305 WGRILFHPARRGKRVVLDVCCSANRNGTKGLMDRITVSKTDNRVL----HFQARRSRWGD 138
           WGR++ HP RR   VV ++C         G ++R+TV+K+  R +    +  AR+  WGD
Sbjct: 546 WGRVIRHPIRRKGHVVFELCAPT------GELERVTVAKSHGREIGRDGYKFARKLHWGD 599

Query: 137 LWP 129
           L+P
Sbjct: 600 LYP 602