BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920466|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_D08.
         (417 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q08964|YP216_YEAST Putative ISWI chromatin-remodeling complex...    34   0.20 
sp|Q9VBQ9|MED28_DROME Mediator of RNA polymerase II transcriptio...    31   2.2  
sp|Q294G7|MED28_DROPS Mediator of RNA polymerase II transcriptio...    30   4.9  
sp|Q8K442|ABC8A_MOUSE ATP-binding cassette sub-family A member 8...    29   8.4  

>sp|Q08964|YP216_YEAST Putative ISWI chromatin-remodeling complex
           subunit YPL216W OS=Saccharomyces cerevisiae GN=YPL216W
           PE=1 SV=1
          Length = 1102

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 47  AMKHLGSDESLRGQLACMNFTLAYFCACLCVLENKVKNSDWNREKFLIETRQGNN-YWED 223
           +M   GSDE  +G++  +   +AY    +  LE K+  SD  R + L + R GN  YW D
Sbjct: 709 SMNRYGSDEC-KGKVNALKVKIAYLMEDIAFLEAKLIQSDIKRLEILGKDRNGNRYYWMD 767


>sp|Q9VBQ9|MED28_DROME Mediator of RNA polymerase II transcription
           subunit 28 OS=Drosophila melanogaster GN=MED28 PE=1 SV=1
          Length = 189

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 21/63 (33%), Positives = 32/63 (50%)
 Frame = +2

Query: 59  LGSDESLRGQLACMNFTLAYFCACLCVLENKVKNSDWNREKFLIETRQGNNYWEDVQEQT 238
           + S+ES  G L  M+     F +CL  L  +  NS  N+E+  +E ++  N + DV  Q 
Sbjct: 1   MASNESGGGNL--MDEFEEAFQSCLLTLTKQEPNSGTNKEEIDLEVQKTTNRFIDVARQM 58

Query: 239 EKF 247
           E F
Sbjct: 59  EAF 61


>sp|Q294G7|MED28_DROPS Mediator of RNA polymerase II transcription
           subunit 28 OS=Drosophila pseudoobscura pseudoobscura
           GN=MED28 PE=3 SV=1
          Length = 190

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 119 FCACLCVLENKVKNSDWNREKFLIETRQGNNYWEDVQEQTEKF 247
           F +CL  L  +  NS  N+E+  +E ++  N + DV  Q E F
Sbjct: 19  FQSCLLSLTKQEPNSGTNKEEIELEVQKTTNRFIDVARQMEAF 61


>sp|Q8K442|ABC8A_MOUSE ATP-binding cassette sub-family A member 8-A
            OS=Mus musculus GN=Abca8a PE=2 SV=1
          Length = 1620

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = -3

Query: 313  GPCNLLALLN--FSQTIFSTEHS*K---FLGLLLHILPIIVALSCLDQK 182
            G C LL   N  FS+ IF  E       FL  LLH    +V L C+++K
Sbjct: 1174 GGCTLLHFENREFSEIIFEPEREYSYLFFLAPLLHFAIFVVILRCMERK 1222

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920466|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_D08.
         (417 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B5VSW5|B5VSW5_YEAS6 YPL216Wp-like protein OS=Saccharomyces ce...    34   3.2  
tr|B3LKL4|B3LKL4_YEAS1 Putative uncharacterized protein OS=Sacch...    34   3.2  
tr|A6ZW39|A6ZW39_YEAS7 Conserved protein OS=Saccharomyces cerevi...    34   3.2  
tr|Q8HMI7|Q8HMI7_9TELE NADH dehydrogenase subunit 4L OS=Carapus ...    33   7.1  
tr|A8N5H7|A8N5H7_COPC7 Putative uncharacterized protein OS=Copri...    33   9.2  

>tr|B5VSW5|B5VSW5_YEAS6 YPL216Wp-like protein OS=Saccharomyces
           cerevisiae (strain AWRI1631) GN=AWRI1631_160550 PE=4
           SV=1
          Length = 932

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 47  AMKHLGSDESLRGQLACMNFTLAYFCACLCVLENKVKNSDWNREKFLIETRQGNN-YWED 223
           +M   GSDE  +G++  +   +AY    +  LE K+  SD  R + L + R GN  YW D
Sbjct: 539 SMNRYGSDEC-KGKVNALKVKIAYLMEDIAFLEAKLIQSDIKRLEILGKDRNGNRYYWMD 597


>tr|B3LKL4|B3LKL4_YEAS1 Putative uncharacterized protein
           OS=Saccharomyces cerevisiae (strain RM11-1a)
           GN=SCRG_02283 PE=4 SV=1
          Length = 1099

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 47  AMKHLGSDESLRGQLACMNFTLAYFCACLCVLENKVKNSDWNREKFLIETRQGNN-YWED 223
           +M   GSDE  +G++  +   +AY    +  LE K+  SD  R + L + R GN  YW D
Sbjct: 706 SMNRYGSDEC-KGKVNALKVKIAYLMEDIAFLEAKLIQSDIKRLEILGKDRNGNRYYWMD 764


>tr|A6ZW39|A6ZW39_YEAS7 Conserved protein OS=Saccharomyces
           cerevisiae (strain YJM789) GN=SCY_5516 PE=4 SV=1
          Length = 1099

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +2

Query: 47  AMKHLGSDESLRGQLACMNFTLAYFCACLCVLENKVKNSDWNREKFLIETRQGNN-YWED 223
           +M   GSDE  +G++  +   +AY    +  LE K+  SD  R + L + R GN  YW D
Sbjct: 706 SMNRYGSDEC-KGKVNALKVKIAYLMEDIAFLEAKLIQSDIKRLEILGKDRNGNRYYWMD 764


>tr|Q8HMI7|Q8HMI7_9TELE NADH dehydrogenase subunit 4L OS=Carapus
           bermudensis GN=ND4L PE=4 SV=1
          Length = 98

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = -3

Query: 241 LGLLLHILPIIVALSCLDQKLFTIPITILHFIFQHTQA 128
           LGL LH + +I AL CL+  + T+ +T+  +  +HT A
Sbjct: 17  LGLALHRVHLISALLCLEAMMLTLYVTLSVWALEHTSA 54


>tr|A8N5H7|A8N5H7_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_04555 PE=4 SV=1
          Length = 1269

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
 Frame = -2

Query: 221 PPNNCCLVLSRSKTFHDSNHYSSLYFPAHTSMHRSKPK*NS------CKLVALVGSHHCQ 60
           PP + CL L +   FH +NHY  L+ P        K    +      C  +  V S  C+
Sbjct: 379 PPPDLCLTLIKLYFFHSNNHYPLLHRPTFDRQWEEKLYERNVWFASVCLFIFAVASRWCE 438

Query: 59  DAS*LADGTISLSE 18
           D   L +   SLSE
Sbjct: 439 DERVLEE---SLSE 449