BP920476
Clone id YMU001_000137_E07
Library
Length 506
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000137_E07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CTATGCTAAAGCCCCGATTGCTGCAATAAGACCCTGAAAGCTTATGTAGCCGAGGAGGGA
GTCCTTCAGCAAGCTCAGAAAAATTTAAGAGTCAACTTCTTTTGAATAAGTCAGTCGCAG
TCATTCTATACTCGAAATATAGTGCACAAGAGTAAGAAGCATTGTAATCAGTTAAGGAAT
AGACAGTGTATGCAAGGTGGCCCACGCAGGTAATATGTATCAATAGCAGCAGCCTCAGCC
TTGGAGACCAGTCCATAACTTTGCTGACTCTAGAAGCTTTCTTTGCCTCCCAACTTTTGG
CATGGATAATCACGAAAATATTGTGATGGATCATACTACTTCCAATTCTCCCGATGATTA
TGCGAGTGCTTGATGAGCACAGCGCATCATCTTGGTGCAACCAGCTCTTGCTTCCTCCAC
AAGATAGAAAAATTGCGCGCGAGCCCAAGATATTTGCTCCACAGGGTCCCCACAAGCTTT
ACACCTTTACCCTGGTTATCTCACAC
■■Homology search results ■■ -
sp_hit_id Q7TPD3
Definition sp|Q7TPD3|ROBO2_MOUSE Roundabout homolog 2 OS=Mus musculus
Align length 28
Score (bit) 30.4
E-value 4.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920476|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_E07.
(506 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q7TPD3|ROBO2_MOUSE Roundabout homolog 2 OS=Mus musculus GN=Ro... 30 4.9
sp|A1TNU7|MUTS_ACIAC DNA mismatch repair protein mutS OS=Acidovo... 30 4.9

>sp|Q7TPD3|ROBO2_MOUSE Roundabout homolog 2 OS=Mus musculus GN=Robo2
PE=2 SV=2
Length = 1470

Score = 30.4 bits (67), Expect = 4.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3

Query: 486 RCKACGDPVEQISWARAQFFYLVEEARA 403
+CKA G+P+ ISW + F +L + RA
Sbjct: 442 KCKATGEPLPVISWLKEGFTFLGRDPRA 469


>sp|A1TNU7|MUTS_ACIAC DNA mismatch repair protein mutS OS=Acidovorax
avenae subsp. citrulli (strain AAC00-1) GN=mutS PE=3
SV=1
Length = 890

Score = 30.4 bits (67), Expect = 4.9
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = +1

Query: 331 SYYFQFSR*LCECLMSTAHHLGATSS----CFLHKIEKLRASPRYLLHRVPTSFTPLPWL 498
++YF+ + + H+GAT S FLH+I+ AS Y +H + P P L
Sbjct: 762 THYFELTELAARHAHAVNVHVGATESGSDIVFLHEIQPGPASRSYGIHVARLAGVPAPVL 821

Query: 499 SH 504
+H
Sbjct: 822 NH 823


tr_hit_id A0DP61
Definition tr|A0DP61|A0DP61_PARTE Chromosome undetermined scaffold_59, whole genome shotgun sequence OS=Paramecium tetraurelia
Align length 63
Score (bit) 33.5
E-value 6.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920476|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_E07.
(506 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A0DP61|A0DP61_PARTE Chromosome undetermined scaffold_59, whol... 33 6.0

>tr|A0DP61|A0DP61_PARTE Chromosome undetermined scaffold_59, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00019010001 PE=4 SV=1
Length = 1862

Score = 33.5 bits (75), Expect = 6.0
Identities = 15/63 (23%), Positives = 33/63 (52%)
Frame = -2

Query: 205 VGHLAYTVYSLTDYNASYSCALYFEYRMTATDLFKRS*LLNFSELAEGLPPRLHKLSGSY 26
+ ++AY ++Y+ Y C LY E + +L+K+ L+ ++ E P+L + + +
Sbjct: 1767 IPYMAYQFPKSSEYSVDYECKLYQEQQQ--QNLYKKKRLIKIKDIQEEFEPKLRQQALNL 1824

Query: 25 CSN 17
C +
Sbjct: 1825 CQH 1827