BP920478 |
Clone id |
YMU001_000137_E09 |
Library |
YMU01 |
Length |
445 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000137_E09. |
Accession |
BP920478 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
TTCTCATGTGCTGGATAACATCCTTGATGACACCAGTCCACTCTTGCTGCAGAGTCACCC AAAAGCACAGGATTCCTCATTTTCATCCTTAATAACACCTCCAGAACCTGCTTTGACTCT TCAATTCCACTCCGGCAATCGGGATAATGCCCCCCTGTTTGAGTAGCATCGGGTCAAATA GGGTGAATGTATCCTTGTAGGGCGGATGTGTAGTAGCATAGTCATTCCTGTCTTGTGTAA TAGAGACATTGCAGAAGGAATCAAGGTGAGGGGGGAGTGGGACACCTCCAAGCAAGGTCG CAGGTACCCCTCTAAGGCGGAAACCCATCTGATCCATTGCTCTAACACTCAAAGGGAGGC GAACAGGATCCGTGATACCATGCGACACTGAATGATGGCTAGCCATAAGGGTCACCATCT CCTCAAGGTGACTCTTCACATCTGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P54341 |
Definition |
sp|P54341|XKDV_BACSU Phage-like element PBSX protein xkdV OS=Bacillus subtilis |
Align length |
49 |
Score (bit) |
31.6 |
E-value |
1.6 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A3AC48 |
Definition |
tr|A3AC48|A3AC48_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica |
Align length |
29 |
Score (bit) |
36.2 |
E-value |
0.83 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920478|Adiantum capillus-veneris mRNA, clone: YMU001_000137_E09. (445 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A3AC48|A3AC48_ORYSJ Putative uncharacterized protein OS=Oryza... 36 0.83 tr|Q9M0C5|Q9M0C5_ARATH Putative uncharacterized protein AT4g3035... 36 1.1 tr|A7PFD9|A7PFD9_VITVI Chromosome chr11 scaffold_14, whole genom... 35 1.8 tr|A7QUC6|A7QUC6_VITVI Chromosome chr11 scaffold_177, whole geno... 35 2.4 tr|A5BZ72|A5BZ72_VITVI Putative uncharacterized protein OS=Vitis... 35 2.4 tr|A5BH48|A5BH48_VITVI Putative uncharacterized protein OS=Vitis... 33 5.4 tr|A0BTE9|A0BTE9_PARTE Chromosome undetermined scaffold_127, who... 33 7.0 tr|B8IH45|B8IH45_METNO Aspartyl/Asparaginyl beta-hydroxylase OS=... 33 9.1 tr|Q7EZJ0|Q7EZJ0_ORYSJ Putative ubiquitin-specific protease OS=O... 33 9.1 tr|Q0D8F5|Q0D8F5_ORYSJ Os07g0163800 protein OS=Oryza sativa subs... 33 9.1 tr|B8B7K1|B8B7K1_ORYSI Putative uncharacterized protein OS=Oryza... 33 9.1
>tr|A3AC48|A3AC48_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_008370 PE=4 SV=1 Length = 966
Score = 36.2 bits (82), Expect = 0.83 Identities = 17/29 (58%), Positives = 22/29 (75%) Frame = -3
Query: 137 CRSGIEESKQVLEVLLRMKMRNPVLLGDS 51 C +G EE +V+EVL R K RNPVL+GD+ Sbjct: 197 CPTGEEEVNKVVEVLKRGKKRNPVLVGDT 225
>tr|Q9M0C5|Q9M0C5_ARATH Putative uncharacterized protein AT4g30350 OS=Arabidopsis thaliana GN=At4g30350 PE=2 SV=1 Length = 924
Score = 35.8 bits (81), Expect = 1.1 Identities = 13/28 (46%), Positives = 23/28 (82%) Frame = -3
Query: 122 EESKQVLEVLLRMKMRNPVLLGDSAARV 39 +E+K+V+E+++R + RNPVL+GDS + Sbjct: 238 DEAKRVIEIMIRTRKRNPVLVGDSEPHI 265
>tr|A7PFD9|A7PFD9_VITVI Chromosome chr11 scaffold_14, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00017025001 PE=4 SV=1 Length = 1049
Score = 35.0 bits (79), Expect = 1.8 Identities = 15/24 (62%), Positives = 21/24 (87%) Frame = -3
Query: 122 EESKQVLEVLLRMKMRNPVLLGDS 51 EE K+V+++LLR K RNPVL+G+S Sbjct: 229 EEVKRVVDILLRTKKRNPVLVGES 252
>tr|A7QUC6|A7QUC6_VITVI Chromosome chr11 scaffold_177, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00006782001 PE=4 SV=1 Length = 939
Score = 34.7 bits (78), Expect = 2.4 Identities = 18/35 (51%), Positives = 23/35 (65%) Frame = -3
Query: 140 DCRSGIEESKQVLEVLLRMKMRNPVLLGDSAARVD 36 D S E+ K VLEVLLR K RN V++GDS + + Sbjct: 179 DSTSVKEDLKLVLEVLLRKKRRNTVIVGDSVSTTE 213
>tr|A5BZ72|A5BZ72_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000145 PE=4 SV=1 Length = 1032
Score = 34.7 bits (78), Expect = 2.4 Identities = 18/35 (51%), Positives = 23/35 (65%) Frame = -3
Query: 140 DCRSGIEESKQVLEVLLRMKMRNPVLLGDSAARVD 36 D S E+ K VLEVLLR K RN V++GDS + + Sbjct: 234 DSTSVKEDLKLVLEVLLRKKRRNTVIVGDSVSTTE 268
>tr|A5BH48|A5BH48_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004969 PE=4 SV=1 Length = 959
Score = 33.5 bits (75), Expect = 5.4 Identities = 14/24 (58%), Positives = 21/24 (87%) Frame = -3
Query: 122 EESKQVLEVLLRMKMRNPVLLGDS 51 E+ K+V+++LLR K RNPVL+G+S Sbjct: 61 EKVKRVVDILLRTKKRNPVLVGES 84
>tr|A0BTE9|A0BTE9_PARTE Chromosome undetermined scaffold_127, whole genome shotgun sequence OS=Paramecium tetraurelia GN=GSPATT00032048001 PE=3 SV=1 Length = 619
Score = 33.1 bits (74), Expect = 7.0 Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 9/74 (12%) Frame = -1
Query: 343 RAMDQMGFRLRGVPATLLGGVPLPPHLDSFCNVSIT---------QDRNDYATTHPPYKD 191 R +G+ L PA +L P LDSF +I QDR T H P D Sbjct: 199 RKRTSIGYELVSNPACILLDEPTSG-LDSFTAFAIINELKQLASQQDRTVIFTIHSPSTD 257
Query: 190 TFTLFDPMLLKQGG 149 F LFD ++L GG Sbjct: 258 IFQLFDRIMLLVGG 271
>tr|B8IH45|B8IH45_METNO Aspartyl/Asparaginyl beta-hydroxylase OS=Methylobacterium nodulans ORS 2060 GN=Mnod_4878 PE=4 SV=1 Length = 200
Score = 32.7 bits (73), Expect = 9.1 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 6/65 (9%) Frame = -2
Query: 237 HKTGMTMLLHIRPTR---IHSPYLTRCYSNRGALSRLP---EWN*RVKAGSGGVIKDENE 76 H T M++H P +P+L C + R ALSRLP E ++ G G VI++ + Sbjct: 59 HATHPAMMIHADPACRDFADTPFLAACPAIRAALSRLPCPLEAVRLMRLGPGSVIREHRD 118
Query: 75 ESCAF 61 +F Sbjct: 119 HDLSF 123
>tr|Q7EZJ0|Q7EZJ0_ORYSJ Putative ubiquitin-specific protease OS=Oryza sativa subsp. japonica GN=P0428D12.118 PE=4 SV=1 Length = 1116
Score = 32.7 bits (73), Expect = 9.1 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 3/37 (8%) Frame = +2
Query: 230 VLCN---RDIAEGIKVRGEWDTSKQGRRYPSKAETHL 331 ++CN +DIAE +++R E D ++ RR KAE HL Sbjct: 533 IICNVDEKDIAEHLRIRLEKDREEKERRKKEKAEAHL 569
>tr|Q0D8F5|Q0D8F5_ORYSJ Os07g0163800 protein OS=Oryza sativa subsp. japonica GN=Os07g0163800 PE=4 SV=1 Length = 1043
Score = 32.7 bits (73), Expect = 9.1 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 3/37 (8%) Frame = +2
Query: 230 VLCN---RDIAEGIKVRGEWDTSKQGRRYPSKAETHL 331 ++CN +DIAE +++R E D ++ RR KAE HL Sbjct: 457 IICNVDEKDIAEHLRIRLEKDREEKERRKKEKAEAHL 493
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