BP920478
Clone id YMU001_000137_E09
Library
Length 445
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000137_E09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TTCTCATGTGCTGGATAACATCCTTGATGACACCAGTCCACTCTTGCTGCAGAGTCACCC
AAAAGCACAGGATTCCTCATTTTCATCCTTAATAACACCTCCAGAACCTGCTTTGACTCT
TCAATTCCACTCCGGCAATCGGGATAATGCCCCCCTGTTTGAGTAGCATCGGGTCAAATA
GGGTGAATGTATCCTTGTAGGGCGGATGTGTAGTAGCATAGTCATTCCTGTCTTGTGTAA
TAGAGACATTGCAGAAGGAATCAAGGTGAGGGGGGAGTGGGACACCTCCAAGCAAGGTCG
CAGGTACCCCTCTAAGGCGGAAACCCATCTGATCCATTGCTCTAACACTCAAAGGGAGGC
GAACAGGATCCGTGATACCATGCGACACTGAATGATGGCTAGCCATAAGGGTCACCATCT
CCTCAAGGTGACTCTTCACATCTGT
■■Homology search results ■■ -
sp_hit_id P54341
Definition sp|P54341|XKDV_BACSU Phage-like element PBSX protein xkdV OS=Bacillus subtilis
Align length 49
Score (bit) 31.6
E-value 1.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920478|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_E09.
(445 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P54341|XKDV_BACSU Phage-like element PBSX protein xkdV OS=Bac... 32 1.6
sp|O67588|CLPB_AQUAE Chaperone protein clpB OS=Aquifex aeolicus ... 30 4.5
sp|Q9D2Q3|CJ088_MOUSE Uncharacterized protein C10orf88 homolog O... 30 6.0
sp|Q9RVI3|CLPB_DEIRA Chaperone protein clpB OS=Deinococcus radio... 29 7.7
sp|Q9R244|TRPC2_MOUSE Short transient receptor potential channel... 29 7.8
sp|Q9Y0C9|RIP3_DICDI Ras-interacting protein RIP3 OS=Dictyosteli... 29 7.8
sp|O13606|MEI4_SCHPO Meiosis-specific transcription factor mei4 ... 29 7.8
sp|Q9RA63|CLPB_THET8 Chaperone protein clpB OS=Thermus thermophi... 29 10.0
sp|Q72IK9|CLPB_THET2 Chaperone protein clpB OS=Thermus thermophi... 29 10.0
sp|Q7X2S8|CLPB_MEIRU Chaperone protein clpB OS=Meiothermus ruber... 29 10.0

>sp|P54341|XKDV_BACSU Phage-like element PBSX protein xkdV
OS=Bacillus subtilis GN=xkdV PE=4 SV=1
Length = 687

Score = 31.6 bits (70), Expect = 1.6
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +2

Query: 296 GRRYPSKAETHLIHCSNTQREANRIRDTMRH*MMASHKGHHLLKVTLHI 442
GR+ K E + I + ++++++ DT + +ASH G HL+ +L+I
Sbjct: 543 GRQALIKGENNKIKYNRIIKDSHKLFDTKNNRFVASHAGMHLVSASLYI 591


>sp|O67588|CLPB_AQUAE Chaperone protein clpB OS=Aquifex aeolicus
GN=clpB PE=3 SV=1
Length = 1006

Score = 30.0 bits (66), Expect = 4.5
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -3

Query: 119 ESKQVLEVLLRMKMRNPVLLGD 54
E QV+E+LLR NPVL+GD
Sbjct: 320 EINQVIEILLRRTKNNPVLVGD 341


>sp|Q9D2Q3|CJ088_MOUSE Uncharacterized protein C10orf88 homolog
OS=Mus musculus PE=2 SV=1
Length = 444

Score = 29.6 bits (65), Expect = 6.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2

Query: 35 SPLLLQSHPKAQDSSFSSLITPPEPA---LTLQFHSGNRDNAPLF 160
S L ++ P+AQD F L+ PP P+ ++L+ RD P F
Sbjct: 30 SLFLTRTGPRAQDLDFEQLLEPPAPSQDPVSLKSSLSPRDENPCF 74


>sp|Q9RVI3|CLPB_DEIRA Chaperone protein clpB OS=Deinococcus
radiodurans GN=clpB PE=3 SV=2
Length = 852

Score = 29.3 bits (64), Expect = 7.7
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = -3

Query: 122 EESKQVLEVLLRMKMRNPVLLGD 54
EE ++V+++LLR NPVL+G+
Sbjct: 177 EEIRRVMQILLRRSKNNPVLIGE 199


>sp|Q9R244|TRPC2_MOUSE Short transient receptor potential channel 2
OS=Mus musculus GN=Trpc2 PE=2 SV=1
Length = 1172

Score = 29.3 bits (64), Expect = 7.8
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = -1

Query: 289 GGVPLPPHLDSFCNVSITQDRNDYATTHPPYKDTFTLFDPMLLKQGGII 143
GG P PP S + IT+ RN + PP DT P L GI+
Sbjct: 1071 GGAPRPPDGASILSRYITRVRNSFQNLGPPTSDT-----PAELTMPGIV 1114


>sp|Q9Y0C9|RIP3_DICDI Ras-interacting protein RIP3 OS=Dictyostelium
discoideum GN=ripA PE=1 SV=1
Length = 838

Score = 29.3 bits (64), Expect = 7.8
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2

Query: 59 PKAQDSSFSSLITPPEPALTLQFHSGN 139
P ++++ + ++ PP LTL H+GN
Sbjct: 410 PNSEEAEYGDIVPPPGMGLTLSIHTGN 436


>sp|O13606|MEI4_SCHPO Meiosis-specific transcription factor mei4
OS=Schizosaccharomyces pombe GN=mei4 PE=2 SV=1
Length = 517

Score = 29.3 bits (64), Expect = 7.8
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2

Query: 53 SHPKAQDSSFSS-LITPPEPALTLQFHSGNRDNAP 154
S P QDSS +S ++ PP P +Q +S + +N P
Sbjct: 233 SQPSNQDSSLNSNIVKPPLPPSNVQSNSSSSENVP 267


>sp|Q9RA63|CLPB_THET8 Chaperone protein clpB OS=Thermus thermophilus
(strain HB8 / ATCC 27634 / DSM 579) GN=clpB PE=1 SV=2
Length = 854

Score = 28.9 bits (63), Expect = 10.0
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = -3

Query: 122 EESKQVLEVLLRMKMRNPVLLGD 54
EE ++V+++LLR NPVL+G+
Sbjct: 177 EEIRRVIQILLRRTKNNPVLIGE 199


>sp|Q72IK9|CLPB_THET2 Chaperone protein clpB OS=Thermus thermophilus
(strain HB27 / ATCC BAA-163 / DSM 7039) GN=clpB PE=3
SV=1
Length = 854

Score = 28.9 bits (63), Expect = 10.0
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = -3

Query: 122 EESKQVLEVLLRMKMRNPVLLGD 54
EE ++V+++LLR NPVL+G+
Sbjct: 177 EEIRRVIQILLRRTKNNPVLIGE 199


>sp|Q7X2S8|CLPB_MEIRU Chaperone protein clpB OS=Meiothermus ruber
GN=clpB PE=3 SV=1
Length = 854

Score = 28.9 bits (63), Expect = 10.0
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = -3

Query: 122 EESKQVLEVLLRMKMRNPVLLGD 54
EE ++V+++LLR NPVL+G+
Sbjct: 177 EEIRRVIQILLRRTKNNPVLIGE 199


tr_hit_id A3AC48
Definition tr|A3AC48|A3AC48_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica
Align length 29
Score (bit) 36.2
E-value 0.83
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920478|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_E09.
(445 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A3AC48|A3AC48_ORYSJ Putative uncharacterized protein OS=Oryza... 36 0.83
tr|Q9M0C5|Q9M0C5_ARATH Putative uncharacterized protein AT4g3035... 36 1.1
tr|A7PFD9|A7PFD9_VITVI Chromosome chr11 scaffold_14, whole genom... 35 1.8
tr|A7QUC6|A7QUC6_VITVI Chromosome chr11 scaffold_177, whole geno... 35 2.4
tr|A5BZ72|A5BZ72_VITVI Putative uncharacterized protein OS=Vitis... 35 2.4
tr|A5BH48|A5BH48_VITVI Putative uncharacterized protein OS=Vitis... 33 5.4
tr|A0BTE9|A0BTE9_PARTE Chromosome undetermined scaffold_127, who... 33 7.0
tr|B8IH45|B8IH45_METNO Aspartyl/Asparaginyl beta-hydroxylase OS=... 33 9.1
tr|Q7EZJ0|Q7EZJ0_ORYSJ Putative ubiquitin-specific protease OS=O... 33 9.1
tr|Q0D8F5|Q0D8F5_ORYSJ Os07g0163800 protein OS=Oryza sativa subs... 33 9.1
tr|B8B7K1|B8B7K1_ORYSI Putative uncharacterized protein OS=Oryza... 33 9.1

>tr|A3AC48|A3AC48_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_008370 PE=4 SV=1
Length = 966

Score = 36.2 bits (82), Expect = 0.83
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = -3

Query: 137 CRSGIEESKQVLEVLLRMKMRNPVLLGDS 51
C +G EE +V+EVL R K RNPVL+GD+
Sbjct: 197 CPTGEEEVNKVVEVLKRGKKRNPVLVGDT 225


>tr|Q9M0C5|Q9M0C5_ARATH Putative uncharacterized protein AT4g30350
OS=Arabidopsis thaliana GN=At4g30350 PE=2 SV=1
Length = 924

Score = 35.8 bits (81), Expect = 1.1
Identities = 13/28 (46%), Positives = 23/28 (82%)
Frame = -3

Query: 122 EESKQVLEVLLRMKMRNPVLLGDSAARV 39
+E+K+V+E+++R + RNPVL+GDS +
Sbjct: 238 DEAKRVIEIMIRTRKRNPVLVGDSEPHI 265


>tr|A7PFD9|A7PFD9_VITVI Chromosome chr11 scaffold_14, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00017025001
PE=4 SV=1
Length = 1049

Score = 35.0 bits (79), Expect = 1.8
Identities = 15/24 (62%), Positives = 21/24 (87%)
Frame = -3

Query: 122 EESKQVLEVLLRMKMRNPVLLGDS 51
EE K+V+++LLR K RNPVL+G+S
Sbjct: 229 EEVKRVVDILLRTKKRNPVLVGES 252


>tr|A7QUC6|A7QUC6_VITVI Chromosome chr11 scaffold_177, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00006782001
PE=4 SV=1
Length = 939

Score = 34.7 bits (78), Expect = 2.4
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = -3

Query: 140 DCRSGIEESKQVLEVLLRMKMRNPVLLGDSAARVD 36
D S E+ K VLEVLLR K RN V++GDS + +
Sbjct: 179 DSTSVKEDLKLVLEVLLRKKRRNTVIVGDSVSTTE 213


>tr|A5BZ72|A5BZ72_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_000145 PE=4 SV=1
Length = 1032

Score = 34.7 bits (78), Expect = 2.4
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = -3

Query: 140 DCRSGIEESKQVLEVLLRMKMRNPVLLGDSAARVD 36
D S E+ K VLEVLLR K RN V++GDS + +
Sbjct: 234 DSTSVKEDLKLVLEVLLRKKRRNTVIVGDSVSTTE 268


>tr|A5BH48|A5BH48_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_004969 PE=4 SV=1
Length = 959

Score = 33.5 bits (75), Expect = 5.4
Identities = 14/24 (58%), Positives = 21/24 (87%)
Frame = -3

Query: 122 EESKQVLEVLLRMKMRNPVLLGDS 51
E+ K+V+++LLR K RNPVL+G+S
Sbjct: 61 EKVKRVVDILLRTKKRNPVLVGES 84


>tr|A0BTE9|A0BTE9_PARTE Chromosome undetermined scaffold_127, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00032048001 PE=3 SV=1
Length = 619

Score = 33.1 bits (74), Expect = 7.0
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Frame = -1

Query: 343 RAMDQMGFRLRGVPATLLGGVPLPPHLDSFCNVSIT---------QDRNDYATTHPPYKD 191
R +G+ L PA +L P LDSF +I QDR T H P D
Sbjct: 199 RKRTSIGYELVSNPACILLDEPTSG-LDSFTAFAIINELKQLASQQDRTVIFTIHSPSTD 257

Query: 190 TFTLFDPMLLKQGG 149
F LFD ++L GG
Sbjct: 258 IFQLFDRIMLLVGG 271


>tr|B8IH45|B8IH45_METNO Aspartyl/Asparaginyl beta-hydroxylase
OS=Methylobacterium nodulans ORS 2060 GN=Mnod_4878 PE=4
SV=1
Length = 200

Score = 32.7 bits (73), Expect = 9.1
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Frame = -2

Query: 237 HKTGMTMLLHIRPTR---IHSPYLTRCYSNRGALSRLP---EWN*RVKAGSGGVIKDENE 76
H T M++H P +P+L C + R ALSRLP E ++ G G VI++ +
Sbjct: 59 HATHPAMMIHADPACRDFADTPFLAACPAIRAALSRLPCPLEAVRLMRLGPGSVIREHRD 118

Query: 75 ESCAF 61
+F
Sbjct: 119 HDLSF 123


>tr|Q7EZJ0|Q7EZJ0_ORYSJ Putative ubiquitin-specific protease
OS=Oryza sativa subsp. japonica GN=P0428D12.118 PE=4
SV=1
Length = 1116

Score = 32.7 bits (73), Expect = 9.1
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = +2

Query: 230 VLCN---RDIAEGIKVRGEWDTSKQGRRYPSKAETHL 331
++CN +DIAE +++R E D ++ RR KAE HL
Sbjct: 533 IICNVDEKDIAEHLRIRLEKDREEKERRKKEKAEAHL 569


>tr|Q0D8F5|Q0D8F5_ORYSJ Os07g0163800 protein OS=Oryza sativa subsp.
japonica GN=Os07g0163800 PE=4 SV=1
Length = 1043

Score = 32.7 bits (73), Expect = 9.1
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = +2

Query: 230 VLCN---RDIAEGIKVRGEWDTSKQGRRYPSKAETHL 331
++CN +DIAE +++R E D ++ RR KAE HL
Sbjct: 457 IICNVDEKDIAEHLRIRLEKDREEKERRKKEKAEAHL 493