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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920479
Clone id YMU001_000137_E11
Library
Length 545
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000137_E11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTTTTTTTTTTTTTTTTTGCAAAACTCACAAAACGTGAGTAAGAAATGTATTATAAAC
CGCAAATTCTACAAAGCTTGCCATGCTCAAATCGAGCCATGGCACCCATAGATACCAGAA
GCTTCCGAAATCCTTACATCAACATACAACAGCTGATAAGGGGAGCCACCCTGCAAAGTA
AAATAAGGCTGATATGGGAGCCACCCAAGGAAAAGGACCTACCACATCCGTCACCTTGTC
CACCAAGTCATAGACCGAATCGTCGAAGAAGAAGAGCCAGAGGCCCAGAGCGAGCCATCT
CGGCCGCCACTGACAGGCGAGCATATGCCACATACTAGCCCACCACCAATGAGGATCACC
GGATCCAAGATCAAAAACTTGATTCCTGCGGCCCACCACCTCCAACAAGAAATAAGAACC
AGTAACCTGTCCACTGTAGGCCAGTAGCGCCAGCCATAGCTACTCGGCCCGAACCACACC
TCCTCGACCAAGCTCCACTCGAGCAGCAGGCCAGCAGGGCCGTTCCAAACCACAGCCGGC
CTTCG
■■Homology search results ■■ -
sp_hit_id Q15N95
Definition sp|Q15N95|NHAA1_PSEA6 Na(+)/H(+) antiporter nhaA 1 OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087)
Align length 47
Score (bit) 33.1
E-value 0.82
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920479|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_E11.
         (525 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q15N95|NHAA1_PSEA6 Na(+)/H(+) antiporter nhaA 1 OS=Pseudoalte...    33   0.82 
sp|Q6SZ61|CD2_MACFA T-cell surface antigen CD2 OS=Macaca fascicu...    27   1.7  
sp|P06729|CD2_HUMAN T-cell surface antigen CD2 OS=Homo sapiens G...    26   3.6  
sp|P21339|MSB1_YEAST Morphogenesis-related protein MSB1 OS=Sacch...    31   4.1  
sp|O14343|KLP5_SCHPO Kinesin-like protein 5 OS=Schizosaccharomyc...    31   4.1  
sp|Q8LJT8|TKI1_ARATH TSL-kinase interacting protein 1 OS=Arabido...    30   5.3  
sp|P38996|NAB3_YEAST Nuclear polyadenylated RNA-binding protein ...    30   5.4  
sp|Q80YV3|TRRAP_MOUSE Transformation/transcription domain-associ...    30   7.0  
sp|Q9Y4A5|TRRAP_HUMAN Transformation/transcription domain-associ...    30   7.0  
sp|A1JRR3|GHRA_YERE8 Glyoxylate/hydroxypyruvate reductase A OS=Y...    30   7.1  
sp|Q5VYV0|FOXB2_HUMAN Forkhead box protein B2 OS=Homo sapiens GN...    30   7.1  
sp|P45019|Y1073_HAEIN UPF0382 membrane protein HI1073 OS=Haemoph...    30   9.1  

>sp|Q15N95|NHAA1_PSEA6 Na(+)/H(+) antiporter nhaA 1
           OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087)
           GN=nhaA1 PE=3 SV=1
          Length = 472

 Score = 33.1 bits (74), Expect = 0.82
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -3

Query: 460 GVVRAE*LWLALLAYSGQVTGSYFLLEVVGRRNQVFDLGSGDPHWWW 320
           G+   E + L  L Y+G   G  F L V+G R  +F L  G   WW+
Sbjct: 193 GLFYTENIHLTSLMYAGLTLGGLFALNVLGFRRPIFYLVGGILLWWF 239


>sp|Q6SZ61|CD2_MACFA T-cell surface antigen CD2 OS=Macaca
           fascicularis GN=CD2 PE=2 SV=1
          Length = 351

 Score = 27.3 bits (59), Expect(2) = 1.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 373 PPPPTRNKNQ*PVHCRPVAPAIATRPEPHLLDQAP 477
           PPPP  +++Q P H RP+ P    + +P     AP
Sbjct: 282 PPPPPGHRSQAPSH-RPLPPGHRVQHQPQKRPPAP 315



 Score = 23.1 bits (48), Expect(2) = 1.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 459 PPRPSSTRAAGQQGRSKPQP 518
           PP PS T+   Q+G   P+P
Sbjct: 312 PPAPSGTQVHQQKGPPLPRP 331


>sp|P06729|CD2_HUMAN T-cell surface antigen CD2 OS=Homo sapiens
           GN=CD2 PE=1 SV=2
          Length = 351

 Score = 26.2 bits (56), Expect(2) = 3.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 373 PPPPTRNKNQ*PVHCRPVAPAIATRPEPHLLDQAP 477
           PPPP  +++Q P H RP  P    + +P     AP
Sbjct: 282 PPPPPGHRSQAPSH-RPPPPGHRVQHQPQKRPPAP 315



 Score = 23.1 bits (48), Expect(2) = 3.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 459 PPRPSSTRAAGQQGRSKPQP 518
           PP PS T+   Q+G   P+P
Sbjct: 312 PPAPSGTQVHQQKGPPLPRP 331


>sp|P21339|MSB1_YEAST Morphogenesis-related protein MSB1
            OS=Saccharomyces cerevisiae GN=MSB1 PE=1 SV=1
          Length = 1137

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
 Frame = +1

Query: 376  PPPTRNKNQ*------PVHCRPVAPAIATRPEPHLLDQAPLEQQASRAVPNHSRP 522
            PP  +++NQ       P H  PV   +     P+L    PL QQ  R  PNH  P
Sbjct: 925  PPELKSRNQRADASPIPQHMVPVKQGV-----PNLPSNVPLYQQMERMNPNHQHP 974


>sp|O14343|KLP5_SCHPO Kinesin-like protein 5 OS=Schizosaccharomyces
           pombe GN=klp5 PE=1 SV=1
          Length = 883

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = +1

Query: 391 NKNQ*PVHCR---PVAPAIATRPEPHLLDQAPLEQQ 489
           NKNQ  V      PV+P +  +PEP LL ++PLE++
Sbjct: 741 NKNQIDVEINLTSPVSPMLEDKPEPGLLIKSPLEKK 776


>sp|Q8LJT8|TKI1_ARATH TSL-kinase interacting protein 1
           OS=Arabidopsis thaliana GN=TKI1 PE=1 SV=2
          Length = 743

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = +3

Query: 42  ANSTKLAMLKSSHGTHRYQKLPKSLHQHTTADKGSHPAK*NKADMGATQGKGP 200
           ANST+LA + S  G  R    P  L + ++ D+GS+    N  D G    +GP
Sbjct: 616 ANSTELASVASPKGVGRVNGEPSQLVEASSGDEGSY----NPHDDGDPMEEGP 664


>sp|P38996|NAB3_YEAST Nuclear polyadenylated RNA-binding protein 3
           OS=Saccharomyces cerevisiae GN=NAB3 PE=1 SV=1
          Length = 802

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 358 LDSCGPPPPTRNKNQ*PVHCRPVAPAIATRPEPHLLDQAPLEQQ 489
           ++S  PPP + N N   +  +P AP ++ +P P    Q   +QQ
Sbjct: 735 MNSSSPPPMSTNYNGQNISAKPSAPPMSHQPPPPQQQQQQQQQQ 778


>sp|Q80YV3|TRRAP_MOUSE Transformation/transcription domain-associated
            protein OS=Mus musculus GN=Trrap PE=1 SV=2
          Length = 2565

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -3

Query: 280  RWLALGLWLFFFDD---SVYDLVDKVTDVVGPFPWVAPISAL 164
            ++LA  LWL  FDD   ++ D VDK    V P  W+A I  L
Sbjct: 1885 KYLAKVLWLLSFDDDKNTLADAVDKYCIGVPPIQWLAWIPQL 1926


>sp|Q9Y4A5|TRRAP_HUMAN Transformation/transcription domain-associated
            protein OS=Homo sapiens GN=TRRAP PE=1 SV=3
          Length = 3859

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -3

Query: 280  RWLALGLWLFFFDD---SVYDLVDKVTDVVGPFPWVAPISAL 164
            ++LA  LWL  FDD   ++ D VDK    V P  W+A I  L
Sbjct: 3197 KYLAKVLWLLSFDDDKNTLADAVDKYCIGVPPIQWLAWIPQL 3238


>sp|A1JRR3|GHRA_YERE8 Glyoxylate/hydroxypyruvate reductase A
           OS=Yersinia enterocolitica serotype O:8 / biotype 1B
           (strain 8081) GN=ghrA PE=3 SV=1
          Length = 313

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 106 RNPYINIQQLIRGATLQSKIRLIWEPPKE 192
           R P  NI+Q  RG T  +   L+W+PP+E
Sbjct: 22  RLPTANIRQWRRGDTQPADYALVWQPPQE 50
tr_hit_id Q3RGJ5
Definition tr|Q3RGJ5|Q3RGJ5_XYLFA Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich domain:Glycoside hydrolase, family 2, sugar binding OS=Xylella fastidiosa Dixon
Align length 56
Score (bit) 35.8
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920479|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_E11.
         (525 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3RGJ5|Q3RGJ5_XYLFA Glycoside hydrolase family 2, immunoglobu...    36   1.4  
tr|Q5ZWZ1|Q5ZWZ1_LEGPH GTP-binding protein Era OS=Legionella pne...    35   3.0  
tr|Q5X6G1|Q5X6G1_LEGPA Putative uncharacterized protein OS=Legio...    35   3.0  
tr|Q5WXW6|Q5WXW6_LEGPL Putative uncharacterized protein OS=Legio...    35   3.0  
tr|A5IFW9|A5IFW9_LEGPC GTP-binding protein Era OS=Legionella pne...    35   3.0  
tr|Q8F1N2|Q8F1N2_LEPIN Predicted hydrolase or acyltransferase, a...    34   5.1  
tr|A7MGE1|A7MGE1_ENTS8 Putative uncharacterized protein OS=Enter...    34   5.1  
tr|Q00Z12|Q00Z12_OSTTA SET domain-containing protein (ISS) OS=Os...    34   5.1  
tr|B4J772|B4J772_DROGR GH20090 OS=Drosophila grimshawi GN=GH2009...    34   5.2  
tr|B2HF48|B2HF48_MYCMM Polyprenol-monophosphomannose synthase, P...    33   8.6  
tr|A0PQN1|A0PQN1_MYCUA N-term polyprenol-monophosphomannose synt...    33   8.6  
tr|Q1JWK1|Q1JWK1_DESAC TonB-dependent receptor OS=Desulfuromonas...    33   8.8  
tr|A6ZP33|A6ZP33_YEAS7 Multicopy suppressor of a budding defect ...    33   8.8  
tr|Q2GU83|Q2GU83_CHAGB Putative uncharacterized protein OS=Chaet...    30   9.1  

>tr|Q3RGJ5|Q3RGJ5_XYLFA Glycoside hydrolase family 2,
           immunoglobulin-like beta-sandwich domain:Glycoside
           hydrolase, family 2, sugar binding OS=Xylella fastidiosa
           Dixon GN=XfasaDRAFT_1473 PE=4 SV=1
          Length = 1281

 Score = 35.8 bits (81), Expect = 1.4
 Identities = 20/56 (35%), Positives = 25/56 (44%)
 Frame = +1

Query: 352 QKLDSCGPPPPTRNKNQ*PVHCRPVAPAIATRPEPHLLDQAPLEQQASRAVPNHSR 519
           Q+     PPP TR       H RP  P +  RP P LLD+ P   Q   + P+  R
Sbjct: 235 QRTTGITPPPATR-------HARPQHPRVQRRPIPRLLDRPPNTPQQHTSHPHRRR 283


>tr|Q5ZWZ1|Q5ZWZ1_LEGPH GTP-binding protein Era OS=Legionella
           pneumophila subsp. pneumophila (strain Philadelphia 1 /
           ATCC 33152 / DSM 7513) GN=era PE=3 SV=1
          Length = 311

 Score = 34.7 bits (78), Expect = 3.0
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -3

Query: 235 VYDLVDKVTDVVGPFPWVAPISALFYFAGWLPLSA 131
           V + VDK+TD     PW+  IS  + FA  +PLSA
Sbjct: 135 VVNKVDKITDKTQLLPWIEQISQRYQFAAIIPLSA 169


>tr|Q5X6G1|Q5X6G1_LEGPA Putative uncharacterized protein
           OS=Legionella pneumophila (strain Paris) GN=lpp1004 PE=3
           SV=1
          Length = 311

 Score = 34.7 bits (78), Expect = 3.0
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -3

Query: 235 VYDLVDKVTDVVGPFPWVAPISALFYFAGWLPLSA 131
           V + VDK+TD     PW+  IS  + FA  +PLSA
Sbjct: 135 VVNKVDKITDKTQLLPWIEQISQRYQFAAIIPLSA 169


>tr|Q5WXW6|Q5WXW6_LEGPL Putative uncharacterized protein
           OS=Legionella pneumophila (strain Lens) GN=lpl0973 PE=3
           SV=1
          Length = 311

 Score = 34.7 bits (78), Expect = 3.0
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -3

Query: 235 VYDLVDKVTDVVGPFPWVAPISALFYFAGWLPLSA 131
           V + VDK+TD     PW+  IS  + FA  +PLSA
Sbjct: 135 VVNKVDKITDKTQLLPWIEQISQRYQFAAIIPLSA 169


>tr|A5IFW9|A5IFW9_LEGPC GTP-binding protein Era OS=Legionella
           pneumophila (strain Corby) GN=era PE=3 SV=1
          Length = 311

 Score = 34.7 bits (78), Expect = 3.0
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -3

Query: 235 VYDLVDKVTDVVGPFPWVAPISALFYFAGWLPLSA 131
           V + VDK+TD     PW+  IS  + FA  +PLSA
Sbjct: 135 VVNKVDKITDKTQLLPWIEQISQRYQFAAIIPLSA 169


>tr|Q8F1N2|Q8F1N2_LEPIN Predicted hydrolase or acyltransferase,
           alpha/beta hydrolase superfamily OS=Leptospira
           interrogans GN=LA3100 PE=4 SV=1
          Length = 309

 Score = 33.9 bits (76), Expect = 5.1
 Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
 Frame = -3

Query: 307 HMLACQWRPRWLALGLWLFFFDDSVYDLVDKVTDVVGPFPWVAP---ISALFYF--AGWL 143
           H++   W     ALG WLF  D      V   T + GP PW+A    I  LF F  + W 
Sbjct: 109 HLVGHDWGA---ALG-WLFISDFEYSKYVSSFTAISGPHPWLAGKRIIDDLFSFDLSNW- 163

Query: 142 PLSAVVC*CKDFG-SFWYLW 86
             S V+    D G  FWY+W
Sbjct: 164 --SKVI----DQGFRFWYIW 177


>tr|A7MGE1|A7MGE1_ENTS8 Putative uncharacterized protein
           OS=Enterobacter sakazakii (strain ATCC BAA-894)
           GN=ESA_04314 PE=4 SV=1
          Length = 153

 Score = 33.9 bits (76), Expect = 5.1
 Identities = 18/34 (52%), Positives = 20/34 (58%)
 Frame = -3

Query: 181 APISALFYFAGWLPLSAVVC*CKDFGSFWYLWVP 80
           AP  ALF FAGWLP + V    KD    W LW+P
Sbjct: 100 APRGALF-FAGWLPSAYVWLLAKDVFFVWPLWLP 132


>tr|Q00Z12|Q00Z12_OSTTA SET domain-containing protein (ISS)
           OS=Ostreococcus tauri GN=Ot11g01420 PE=4 SV=1
          Length = 1744

 Score = 33.9 bits (76), Expect = 5.1
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
 Frame = -2

Query: 524 EGRLWFGTALLACCSSGAWSRRCGSGRVAMAGATGLQWTGYWF----LFLV--GGGG 372
           +G +++G+A  A C  GA  +   S RV +AG T   + G WF    L +V  GGGG
Sbjct: 802 DGNMFYGSAWEAHCGRGATRKYKASVRVYLAGPTPQMFIGRWFDHVGLKVVDRGGGG 858


>tr|B4J772|B4J772_DROGR GH20090 OS=Drosophila grimshawi GN=GH20090
            PE=4 SV=1
          Length = 1191

 Score = 33.9 bits (76), Expect = 5.2
 Identities = 20/47 (42%), Positives = 24/47 (51%)
 Frame = +1

Query: 376  PPPTRNKNQ*PVHCRPVAPAIATRPEPHLLDQAPLEQQASRAVPNHS 516
            PPP  N N  P   R  AP +A   +PH LD   L +Q SR V + S
Sbjct: 1119 PPPPPNSNYGPAGHRVSAPPLANILDPHGLDSHLLYEQNSRRVKSIS 1165


>tr|B2HF48|B2HF48_MYCMM Polyprenol-monophosphomannose synthase,
           Ppm1A OS=Mycobacterium marinum (strain ATCC BAA-535 / M)
           GN=ppm1A PE=4 SV=1
          Length = 704

 Score = 33.1 bits (74), Expect = 8.6
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
 Frame = -3

Query: 331 HWWWASMWHMLACQW---RPRWL---ALGLWLFFFDDSVYDLVDKVTDVVGPFPWVAPIS 170
           +WWWA++  +    W    P       LG    F       L+  +  +VGP PW+   +
Sbjct: 142 NWWWAAIVSVALLTWVLMHPTTTPVGGLGYGFVFGLACFVPLLPWIGTLVGPVPWLVLAT 201

Query: 169 ALFYFAGWLPLSAVV 125
               F G   LSAVV
Sbjct: 202 TSALFPGLFGLSAVV 216