BP920483 |
Clone id |
YMU001_000137_F03 |
Library |
YMU01 |
Length |
488 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000137_F03. |
Accession |
BP920483 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL3825Contig1 |
Sequence |
TTTTTTTTTTTTTTTTCACCCAACAACAAAAGTAGCTTAACACTGCACAATGGTTTGTCA CTAGGACACATCAAGTCTACCTGACACTGAATTCTTGAACAAAGAGTAGACACAGCAAAT CAAAATATCATCTACAAGCAGCCTTTGAACCCGAGAATTCAAACAGAGCTTGTAGCAAAG AGCGAAGAGCCCAGCCTACGGCCAGAAAAGTTACACTTTGATTGCCTACCTCGCGGACCC AAGGTCACTCCCACTGCATCTGCAAGTTTATCAATGCCAGCCTGCAAAGCAGACCGAGAC GACTGATCAAAAACAATCTCCTTAGCTACAGCTCTGACAAGCAGGCGAGGGTGGCTATGC TGCTTTCTGCTATCCAAGCAAGGAACTCGGTTCCTTCCGCACAAGTCTCGACCTCTATAG AAAGACAGGGACGATGCAGATGAGGAGAAAGACGTCGTCAAGCTGTTGTGGGTAAGGAGA GATTGGGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P08926 |
Definition |
sp|P08926|RUBA_PEA RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum |
Align length |
41 |
Score (bit) |
67.4 |
E-value |
3.0e-11 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920483|Adiantum capillus-veneris mRNA, clone: YMU001_000137_F03. (472 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P08926|RUBA_PEA RuBisCO large subunit-binding protein subunit... 67 3e-11 sp|P21239|RUB1_BRANA RuBisCO large subunit-binding protein subun... 67 5e-11 sp|P34794|RUB2_BRANA RuBisCO large subunit-binding protein subun... 66 7e-11 sp|P21238|RUBA_ARATH RuBisCO large subunit-binding protein subun... 64 3e-10 sp|Q42694|RUBA_CHLRE RuBisCO large subunit-binding protein subun... 63 6e-10 sp|P08823|RUBA_WHEAT RuBisCO large subunit-binding protein subun... 60 5e-09 sp|Q5Z1F9|CH601_NOCFA 60 kDa chaperonin 1 OS=Nocardia farcinica ... 52 1e-06 sp|Q8KJ24|CH60_CLOBO 60 kDa chaperonin OS=Clostridium botulinum ... 52 2e-06 sp|A0QSS4|CH602_MYCS2 60 kDa chaperonin 2 OS=Mycobacterium smegm... 51 3e-06 sp|A4TEN6|CH602_MYCGI 60 kDa chaperonin 2 OS=Mycobacterium gilvu... 51 3e-06 sp|A0Q2T1|CH60_CLONN 60 kDa chaperonin OS=Clostridium novyi (str... 50 4e-06 sp|Q67KB8|CH60_SYMTH 60 kDa chaperonin OS=Symbiobacterium thermo... 50 7e-06 sp|A4FPA5|CH602_SACEN 60 kDa chaperonin 2 OS=Saccharopolyspora e... 50 7e-06 sp|Q7MBC7|CH601_GLOVI 60 kDa chaperonin 1 OS=Gloeobacter violace... 50 7e-06 sp|Q9KKF0|CH60_CLODI 60 kDa chaperonin OS=Clostridium difficile ... 49 9e-06 sp|Q18CT5|CH60_CLOD6 60 kDa chaperonin OS=Clostridium difficile ... 49 9e-06 sp|Q2IFK0|CH602_ANADE 60 kDa chaperonin 2 OS=Anaeromyxobacter de... 49 9e-06 sp|B0CFQ6|CH601_ACAM1 60 kDa chaperonin 1 OS=Acaryochloris marin... 49 9e-06 sp|A1T577|CH602_MYCVP 60 kDa chaperonin 2 OS=Mycobacterium vanba... 49 1e-05 sp|Q1BCW7|CH602_MYCSS 60 kDa chaperonin 2 OS=Mycobacterium sp. (... 49 1e-05 sp|A1UC26|CH602_MYCSK 60 kDa chaperonin 2 OS=Mycobacterium sp. (... 49 1e-05 sp|A3PVQ7|CH602_MYCSJ 60 kDa chaperonin 2 OS=Mycobacterium sp. (... 49 1e-05 sp|Q2RGL8|CH602_MOOTA 60 kDa chaperonin 2 OS=Moorella thermoacet... 49 1e-05 sp|Q4JTF2|CH602_CORJK 60 kDa chaperonin 2 OS=Corynebacterium jei... 49 1e-05 sp|Q2S5Z8|CH601_SALRD 60 kDa chaperonin 1 OS=Salinibacter ruber ... 49 1e-05 sp|Q04E64|CH60_OENOB 60 kDa chaperonin OS=Oenococcus oeni (strai... 49 1e-05 sp|A4IJV3|CH60_GEOTN 60 kDa chaperonin OS=Geobacillus thermodeni... 49 1e-05 sp|Q8VV84|CH60_BACTR 60 kDa chaperonin OS=Bacillus thermoglucosi... 49 1e-05 sp|Q07201|CH60_BACST 60 kDa chaperonin OS=Bacillus stearothermop... 49 1e-05 sp|Q2S0Q3|CH602_SALRD 60 kDa chaperonin 2 OS=Salinibacter ruber ... 49 1e-05
>sp|P08926|RUBA_PEA RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2 Length = 587
Score = 67.4 bits (163), Expect = 3e-11 Identities = 32/41 (78%), Positives = 37/41 (90%) Frame = -1
Query: 331 RLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209 R +V+A AK+I FDQ SRSA+QAGIDKLADAVG+TLGPRGR Sbjct: 42 RFVVKAAAKDIAFDQHSRSAMQAGIDKLADAVGLTLGPRGR 82
>sp|P21239|RUB1_BRANA RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2 Length = 546
Score = 66.6 bits (161), Expect = 5e-11 Identities = 34/41 (82%), Positives = 36/41 (87%) Frame = -1
Query: 331 RLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209 R VRA KEI FDQSSR+ALQAGIDKLADAVG+TLGPRGR Sbjct: 1 RFSVRANVKEISFDQSSRAALQAGIDKLADAVGLTLGPRGR 41
>sp|P34794|RUB2_BRANA RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus PE=2 SV=1 Length = 583
Score = 66.2 bits (160), Expect = 7e-11 Identities = 33/41 (80%), Positives = 36/41 (87%) Frame = -1
Query: 331 RLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209 R +RA KEI FDQSSR+ALQAGIDKLADAVG+TLGPRGR Sbjct: 40 RFSLRANVKEIAFDQSSRAALQAGIDKLADAVGLTLGPRGR 80
>sp|P21238|RUBA_ARATH RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g28000 PE=1 SV=2 Length = 586
Score = 63.9 bits (154), Expect = 3e-10 Identities = 32/41 (78%), Positives = 34/41 (82%) Frame = -1
Query: 331 RLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209 R VRA KEI FDQ SR+ALQAGIDKLAD VG+TLGPRGR Sbjct: 41 RFSVRANVKEIAFDQHSRAALQAGIDKLADCVGLTLGPRGR 81
>sp|Q42694|RUBA_CHLRE RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1 Length = 580
Score = 63.2 bits (152), Expect = 6e-10 Identities = 33/42 (78%), Positives = 37/42 (88%), Gaps = 1/42 (2%) Frame = -1
Query: 331 RLLVRAV-AKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209 RL++RA AKEIVFDQ SR LQAGI+K+ADAVGVTLGPRGR Sbjct: 28 RLVIRAADAKEIVFDQESRRRLQAGINKVADAVGVTLGPRGR 69
>sp|P08823|RUBA_WHEAT RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1 Length = 543
Score = 60.1 bits (144), Expect = 5e-09 Identities = 29/36 (80%), Positives = 33/36 (91%) Frame = -1
Query: 316 AVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209 A AKEI FDQ SR+ALQAG++KLA+AVGVTLGPRGR Sbjct: 2 ADAKEIAFDQKSRAALQAGVEKLANAVGVTLGPRGR 37
>sp|Q5Z1F9|CH601_NOCFA 60 kDa chaperonin 1 OS=Nocardia farcinica GN=groL1 PE=3 SV=1 Length = 536
Score = 52.4 bits (124), Expect = 1e-06 Identities = 24/35 (68%), Positives = 30/35 (85%) Frame = -1
Query: 313 VAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209 +AK+I FD+ +R AL+ G+DKLADAV VTLGPRGR Sbjct: 1 MAKQIEFDEKARRALERGVDKLADAVKVTLGPRGR 35
>sp|Q8KJ24|CH60_CLOBO 60 kDa chaperonin OS=Clostridium botulinum GN=groL PE=3 SV=1 Length = 543
Score = 51.6 bits (122), Expect = 2e-06 Identities = 27/56 (48%), Positives = 37/56 (66%) Frame = -1
Query: 313 VAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGRQSKCNFSGRRLGSSLFATSSV 146 +AK I+F + SR A+QAG+DKLA+AV VTLGP+GR + ++ GS L V Sbjct: 1 MAKSILFGEESRRAMQAGVDKLANAVKVTLGPKGRNVVLD---KKFGSPLITNDGV 53
>sp|A0QSS4|CH602_MYCS2 60 kDa chaperonin 2 OS=Mycobacterium smegmatis GN=groL2 PE=3 SV=1 Length = 540
Score = 50.8 bits (120), Expect = 3e-06 Identities = 22/35 (62%), Positives = 32/35 (91%) Frame = -1
Query: 313 VAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209 ++K+I F++++R A++AG+DKLADAV VTLGPRGR Sbjct: 1 MSKQIEFNETARRAMEAGVDKLADAVKVTLGPRGR 35
>sp|A4TEN6|CH602_MYCGI 60 kDa chaperonin 2 OS=Mycobacterium gilvum (strain PYR-GCK) GN=groL2 PE=3 SV=1 Length = 541
Score = 50.8 bits (120), Expect = 3e-06 Identities = 22/35 (62%), Positives = 32/35 (91%) Frame = -1
Query: 313 VAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209 ++K+I F++++R A++AG+DKLADAV VTLGPRGR Sbjct: 1 MSKQIEFNETARRAMEAGVDKLADAVKVTLGPRGR 35
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7PQU6 |
Definition |
tr|A7PQU6|A7PQU6_VITVI Chromosome chr6 scaffold_25, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
44 |
Score (bit) |
71.6 |
E-value |
2.0e-11 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920483|Adiantum capillus-veneris mRNA, clone: YMU001_000137_F03. (472 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7PQU6|A7PQU6_VITVI Chromosome chr6 scaffold_25, whole genome... 72 2e-11 tr|A5B8H0|A5B8H0_VITVI Putative uncharacterized protein OS=Vitis... 72 2e-11 tr|B6SXW8|B6SXW8_MAIZE RuBisCO large subunit-binding protein sub... 70 5e-11 tr|A9T5W1|A9T5W1_PHYPA Predicted protein OS=Physcomitrella paten... 70 5e-11 tr|Q9ZTV1|Q9ZTV1_CANLI Chaperonin 60 alpha subunit OS=Canavalia ... 69 2e-10 tr|B8LQV7|B8LQV7_PICSI Putative uncharacterized protein OS=Picea... 69 2e-10 tr|Q9FXL5|Q9FXL5_AVIMR Chaperonin-60 alpha subunit OS=Avicennia ... 68 3e-10 tr|Q2QU06|Q2QU06_ORYSJ Os12g0277500 protein OS=Oryza sativa subs... 66 8e-10 tr|A2ZJH7|A2ZJH7_ORYSI Putative uncharacterized protein OS=Oryza... 66 8e-10 tr|Q2PEX5|Q2PEX5_TRIPR Putative rubisco subunit binding-protein ... 66 1e-09 tr|Q2PEW7|Q2PEW7_TRIPR Putative rubisco subunit binding-protein ... 66 1e-09 tr|Q2PEQ0|Q2PEQ0_TRIPR Putative rubisco subunit binding-protein ... 66 1e-09 tr|Q2PEP1|Q2PEP1_TRIPR Putative rubisco subunit binding-protein ... 66 1e-09 tr|B7FM02|B7FM02_MEDTR Putative uncharacterized protein OS=Medic... 65 1e-09 tr|Q8L5U4|Q8L5U4_ARATH Putative rubisco subunit binding-protein ... 64 4e-09 tr|A9SSR9|A9SSR9_PHYPA Predicted protein OS=Physcomitrella paten... 64 5e-09 tr|A4S614|A4S614_OSTLU Chaperonin 60 alpha chain, chloroplast OS... 64 5e-09 tr|A8JIB7|A8JIB7_CHLRE Chaperonin 60A OS=Chlamydomonas reinhardt... 63 6e-09 tr|Q84P86|Q84P86_ORYSJ Putative chaperonin 60 alpha subunit (Fra... 61 3e-08 tr|Q7X9A7|Q7X9A7_ORYSJ Putative rubisco subunit binding-protein ... 61 3e-08 tr|Q0DLK5|Q0DLK5_ORYSJ Os03g0859700 protein (Fragment) OS=Oryza ... 61 3e-08 tr|A2XPB4|A2XPB4_ORYSI Putative uncharacterized protein OS=Oryza... 61 3e-08 tr|Q00XK6|Q00XK6_OSTTA RuBisCO subunit binding-protein alpha sub... 60 4e-08 tr|Q56XV8|Q56XV8_ARATH Chaperonin 60 alpha chain-like protein OS... 57 5e-07 tr|Q5IX17|Q5IX17_PROWI Plastid 60 kDa chaperonin alpha subunit (... 57 6e-07 tr|A7P2R7|A7P2R7_VITVI Chromosome chr1 scaffold_5, whole genome ... 54 5e-06 tr|Q2MGR4|Q2MGR4_MEDTR GroEL-like chaperone, ATPase OS=Medicago ... 52 1e-05 tr|B1B8X4|B1B8X4_CLOBO 60 kDa chaperonin OS=Clostridium botulinu... 52 2e-05 tr|B1TYB7|B1TYB7_MICLU Chaperonin GroEL OS=Micrococcus luteus NC... 50 4e-05 tr|B3ENV7|B3ENV7_CHLPB Chaperonin GroEL OS=Chlorobium phaeobacte... 50 6e-05
>tr|A7PQU6|A7PQU6_VITVI Chromosome chr6 scaffold_25, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00022204001 PE=3 SV=1 Length = 582
Score = 71.6 bits (174), Expect = 2e-11 Identities = 36/44 (81%), Positives = 40/44 (90%) Frame = -1
Query: 340 SHPRLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209 S+ R +VRA AKEI FDQSSR+ALQAGIDKLADAVG+TLGPRGR Sbjct: 34 SNNRFVVRASAKEIAFDQSSRAALQAGIDKLADAVGLTLGPRGR 77
>tr|A5B8H0|A5B8H0_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037064 PE=3 SV=1 Length = 576
Score = 71.6 bits (174), Expect = 2e-11 Identities = 36/44 (81%), Positives = 40/44 (90%) Frame = -1
Query: 340 SHPRLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209 S+ R +VRA AKEI FDQSSR+ALQAGIDKLADAVG+TLGPRGR Sbjct: 38 SNNRFVVRASAKEIAFDQSSRAALQAGIDKLADAVGLTLGPRGR 81
>tr|B6SXW8|B6SXW8_MAIZE RuBisCO large subunit-binding protein subunit alpha OS=Zea mays PE=2 SV=1 Length = 584
Score = 70.1 bits (170), Expect = 5e-11 Identities = 37/55 (67%), Positives = 44/55 (80%) Frame = -1
Query: 373 RVPCLDSRKQHSHPRLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209 R+P + R+ P+LLVRA AKEI FDQ SR+ALQAG++KLA AVGVTLGPRGR Sbjct: 32 RLPAVARRR----PQLLVRASAKEIAFDQGSRAALQAGVEKLAAAVGVTLGPRGR 82
>tr|A9T5W1|A9T5W1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_191937 PE=3 SV=1 Length = 583
Score = 70.1 bits (170), Expect = 5e-11 Identities = 34/47 (72%), Positives = 42/47 (89%) Frame = -1
Query: 349 KQHSHPRLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209 ++ ++ +L+V + AKEI+FDQ SRSALQAGIDKLADAVGVTLGPRGR Sbjct: 30 RRGNNSKLVVTSAAKEILFDQESRSALQAGIDKLADAVGVTLGPRGR 76
>tr|Q9ZTV1|Q9ZTV1_CANLI Chaperonin 60 alpha subunit OS=Canavalia lineata PE=2 SV=1 Length = 581
Score = 68.6 bits (166), Expect = 2e-10 Identities = 35/47 (74%), Positives = 41/47 (87%) Frame = -1
Query: 349 KQHSHPRLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209 +Q +H R V+A AKEI FDQSSR+A+QAGIDKLADAVG+TLGPRGR Sbjct: 34 RQPNH-RFAVKASAKEIAFDQSSRAAIQAGIDKLADAVGLTLGPRGR 79
>tr|B8LQV7|B8LQV7_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 598
Score = 68.6 bits (166), Expect = 2e-10 Identities = 33/47 (70%), Positives = 41/47 (87%) Frame = -1
Query: 349 KQHSHPRLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209 + S+ R+LVRA AK+I+FDQ SR+++Q GIDKLADAVGVTLGPRGR Sbjct: 47 RARSNSRVLVRASAKDILFDQDSRASVQRGIDKLADAVGVTLGPRGR 93
>tr|Q9FXL5|Q9FXL5_AVIMR Chaperonin-60 alpha subunit OS=Avicennia marina GN=chpa PE=2 SV=1 Length = 326
Score = 67.8 bits (164), Expect = 3e-10 Identities = 33/47 (70%), Positives = 39/47 (82%) Frame = -1
Query: 349 KQHSHPRLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209 ++ + R +VRA AKEI FDQ SRSA+Q GIDKLADAVG+TLGPRGR Sbjct: 38 QKQAKSRFVVRADAKEIAFDQKSRSAMQTGIDKLADAVGLTLGPRGR 84
>tr|Q2QU06|Q2QU06_ORYSJ Os12g0277500 protein OS=Oryza sativa subsp. japonica GN=Os12g0277500 PE=1 SV=1 Length = 578
Score = 66.2 bits (160), Expect = 8e-10 Identities = 32/41 (78%), Positives = 38/41 (92%) Frame = -1
Query: 331 RLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209 RL+VRA AK+I FDQ SR+ALQAG++KLA+AVGVTLGPRGR Sbjct: 32 RLVVRADAKDIAFDQKSRAALQAGVEKLANAVGVTLGPRGR 72
>tr|A2ZJH7|A2ZJH7_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_37967 PE=3 SV=1 Length = 578
Score = 66.2 bits (160), Expect = 8e-10 Identities = 32/41 (78%), Positives = 38/41 (92%) Frame = -1
Query: 331 RLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209 RL+VRA AK+I FDQ SR+ALQAG++KLA+AVGVTLGPRGR Sbjct: 32 RLVVRADAKDIAFDQKSRAALQAGVEKLANAVGVTLGPRGR 72
>tr|Q2PEX5|Q2PEX5_TRIPR Putative rubisco subunit binding-protein alpha subunit (Fragment) OS=Trifolium pratense PE=2 SV=1 Length = 578
Score = 65.9 bits (159), Expect = 1e-09 Identities = 31/41 (75%), Positives = 36/41 (87%) Frame = -1
Query: 331 RLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209 R +V+A AK+I FDQ SR A+QAGIDKLADAVG+TLGPRGR Sbjct: 33 RFMVKAAAKDIAFDQHSRRAMQAGIDKLADAVGLTLGPRGR 73
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