BP920483
Clone id YMU001_000137_F03
Library
Length 488
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000137_F03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TTTTTTTTTTTTTTTTCACCCAACAACAAAAGTAGCTTAACACTGCACAATGGTTTGTCA
CTAGGACACATCAAGTCTACCTGACACTGAATTCTTGAACAAAGAGTAGACACAGCAAAT
CAAAATATCATCTACAAGCAGCCTTTGAACCCGAGAATTCAAACAGAGCTTGTAGCAAAG
AGCGAAGAGCCCAGCCTACGGCCAGAAAAGTTACACTTTGATTGCCTACCTCGCGGACCC
AAGGTCACTCCCACTGCATCTGCAAGTTTATCAATGCCAGCCTGCAAAGCAGACCGAGAC
GACTGATCAAAAACAATCTCCTTAGCTACAGCTCTGACAAGCAGGCGAGGGTGGCTATGC
TGCTTTCTGCTATCCAAGCAAGGAACTCGGTTCCTTCCGCACAAGTCTCGACCTCTATAG
AAAGACAGGGACGATGCAGATGAGGAGAAAGACGTCGTCAAGCTGTTGTGGGTAAGGAGA
GATTGGGC
■■Homology search results ■■ -
sp_hit_id P08926
Definition sp|P08926|RUBA_PEA RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum
Align length 41
Score (bit) 67.4
E-value 3.0e-11
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920483|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_F03.
(472 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P08926|RUBA_PEA RuBisCO large subunit-binding protein subunit... 67 3e-11
sp|P21239|RUB1_BRANA RuBisCO large subunit-binding protein subun... 67 5e-11
sp|P34794|RUB2_BRANA RuBisCO large subunit-binding protein subun... 66 7e-11
sp|P21238|RUBA_ARATH RuBisCO large subunit-binding protein subun... 64 3e-10
sp|Q42694|RUBA_CHLRE RuBisCO large subunit-binding protein subun... 63 6e-10
sp|P08823|RUBA_WHEAT RuBisCO large subunit-binding protein subun... 60 5e-09
sp|Q5Z1F9|CH601_NOCFA 60 kDa chaperonin 1 OS=Nocardia farcinica ... 52 1e-06
sp|Q8KJ24|CH60_CLOBO 60 kDa chaperonin OS=Clostridium botulinum ... 52 2e-06
sp|A0QSS4|CH602_MYCS2 60 kDa chaperonin 2 OS=Mycobacterium smegm... 51 3e-06
sp|A4TEN6|CH602_MYCGI 60 kDa chaperonin 2 OS=Mycobacterium gilvu... 51 3e-06
sp|A0Q2T1|CH60_CLONN 60 kDa chaperonin OS=Clostridium novyi (str... 50 4e-06
sp|Q67KB8|CH60_SYMTH 60 kDa chaperonin OS=Symbiobacterium thermo... 50 7e-06
sp|A4FPA5|CH602_SACEN 60 kDa chaperonin 2 OS=Saccharopolyspora e... 50 7e-06
sp|Q7MBC7|CH601_GLOVI 60 kDa chaperonin 1 OS=Gloeobacter violace... 50 7e-06
sp|Q9KKF0|CH60_CLODI 60 kDa chaperonin OS=Clostridium difficile ... 49 9e-06
sp|Q18CT5|CH60_CLOD6 60 kDa chaperonin OS=Clostridium difficile ... 49 9e-06
sp|Q2IFK0|CH602_ANADE 60 kDa chaperonin 2 OS=Anaeromyxobacter de... 49 9e-06
sp|B0CFQ6|CH601_ACAM1 60 kDa chaperonin 1 OS=Acaryochloris marin... 49 9e-06
sp|A1T577|CH602_MYCVP 60 kDa chaperonin 2 OS=Mycobacterium vanba... 49 1e-05
sp|Q1BCW7|CH602_MYCSS 60 kDa chaperonin 2 OS=Mycobacterium sp. (... 49 1e-05
sp|A1UC26|CH602_MYCSK 60 kDa chaperonin 2 OS=Mycobacterium sp. (... 49 1e-05
sp|A3PVQ7|CH602_MYCSJ 60 kDa chaperonin 2 OS=Mycobacterium sp. (... 49 1e-05
sp|Q2RGL8|CH602_MOOTA 60 kDa chaperonin 2 OS=Moorella thermoacet... 49 1e-05
sp|Q4JTF2|CH602_CORJK 60 kDa chaperonin 2 OS=Corynebacterium jei... 49 1e-05
sp|Q2S5Z8|CH601_SALRD 60 kDa chaperonin 1 OS=Salinibacter ruber ... 49 1e-05
sp|Q04E64|CH60_OENOB 60 kDa chaperonin OS=Oenococcus oeni (strai... 49 1e-05
sp|A4IJV3|CH60_GEOTN 60 kDa chaperonin OS=Geobacillus thermodeni... 49 1e-05
sp|Q8VV84|CH60_BACTR 60 kDa chaperonin OS=Bacillus thermoglucosi... 49 1e-05
sp|Q07201|CH60_BACST 60 kDa chaperonin OS=Bacillus stearothermop... 49 1e-05
sp|Q2S0Q3|CH602_SALRD 60 kDa chaperonin 2 OS=Salinibacter ruber ... 49 1e-05

>sp|P08926|RUBA_PEA RuBisCO large subunit-binding protein subunit
alpha, chloroplastic OS=Pisum sativum PE=1 SV=2
Length = 587

Score = 67.4 bits (163), Expect = 3e-11
Identities = 32/41 (78%), Positives = 37/41 (90%)
Frame = -1

Query: 331 RLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209
R +V+A AK+I FDQ SRSA+QAGIDKLADAVG+TLGPRGR
Sbjct: 42 RFVVKAAAKDIAFDQHSRSAMQAGIDKLADAVGLTLGPRGR 82


>sp|P21239|RUB1_BRANA RuBisCO large subunit-binding protein subunit
alpha, chloroplastic (Fragment) OS=Brassica napus PE=2
SV=2
Length = 546

Score = 66.6 bits (161), Expect = 5e-11
Identities = 34/41 (82%), Positives = 36/41 (87%)
Frame = -1

Query: 331 RLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209
R VRA KEI FDQSSR+ALQAGIDKLADAVG+TLGPRGR
Sbjct: 1 RFSVRANVKEISFDQSSRAALQAGIDKLADAVGLTLGPRGR 41


>sp|P34794|RUB2_BRANA RuBisCO large subunit-binding protein subunit
alpha, chloroplastic OS=Brassica napus PE=2 SV=1
Length = 583

Score = 66.2 bits (160), Expect = 7e-11
Identities = 33/41 (80%), Positives = 36/41 (87%)
Frame = -1

Query: 331 RLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209
R +RA KEI FDQSSR+ALQAGIDKLADAVG+TLGPRGR
Sbjct: 40 RFSLRANVKEIAFDQSSRAALQAGIDKLADAVGLTLGPRGR 80


>sp|P21238|RUBA_ARATH RuBisCO large subunit-binding protein subunit
alpha, chloroplastic OS=Arabidopsis thaliana
GN=At2g28000 PE=1 SV=2
Length = 586

Score = 63.9 bits (154), Expect = 3e-10
Identities = 32/41 (78%), Positives = 34/41 (82%)
Frame = -1

Query: 331 RLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209
R VRA KEI FDQ SR+ALQAGIDKLAD VG+TLGPRGR
Sbjct: 41 RFSVRANVKEIAFDQHSRAALQAGIDKLADCVGLTLGPRGR 81


>sp|Q42694|RUBA_CHLRE RuBisCO large subunit-binding protein subunit
alpha, chloroplastic OS=Chlamydomonas reinhardtii PE=2
SV=1
Length = 580

Score = 63.2 bits (152), Expect = 6e-10
Identities = 33/42 (78%), Positives = 37/42 (88%), Gaps = 1/42 (2%)
Frame = -1

Query: 331 RLLVRAV-AKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209
RL++RA AKEIVFDQ SR LQAGI+K+ADAVGVTLGPRGR
Sbjct: 28 RLVIRAADAKEIVFDQESRRRLQAGINKVADAVGVTLGPRGR 69


>sp|P08823|RUBA_WHEAT RuBisCO large subunit-binding protein subunit
alpha, chloroplastic (Fragment) OS=Triticum aestivum
PE=1 SV=1
Length = 543

Score = 60.1 bits (144), Expect = 5e-09
Identities = 29/36 (80%), Positives = 33/36 (91%)
Frame = -1

Query: 316 AVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209
A AKEI FDQ SR+ALQAG++KLA+AVGVTLGPRGR
Sbjct: 2 ADAKEIAFDQKSRAALQAGVEKLANAVGVTLGPRGR 37


>sp|Q5Z1F9|CH601_NOCFA 60 kDa chaperonin 1 OS=Nocardia farcinica
GN=groL1 PE=3 SV=1
Length = 536

Score = 52.4 bits (124), Expect = 1e-06
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = -1

Query: 313 VAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209
+AK+I FD+ +R AL+ G+DKLADAV VTLGPRGR
Sbjct: 1 MAKQIEFDEKARRALERGVDKLADAVKVTLGPRGR 35


>sp|Q8KJ24|CH60_CLOBO 60 kDa chaperonin OS=Clostridium botulinum
GN=groL PE=3 SV=1
Length = 543

Score = 51.6 bits (122), Expect = 2e-06
Identities = 27/56 (48%), Positives = 37/56 (66%)
Frame = -1

Query: 313 VAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGRQSKCNFSGRRLGSSLFATSSV 146
+AK I+F + SR A+QAG+DKLA+AV VTLGP+GR + ++ GS L V
Sbjct: 1 MAKSILFGEESRRAMQAGVDKLANAVKVTLGPKGRNVVLD---KKFGSPLITNDGV 53


>sp|A0QSS4|CH602_MYCS2 60 kDa chaperonin 2 OS=Mycobacterium
smegmatis GN=groL2 PE=3 SV=1
Length = 540

Score = 50.8 bits (120), Expect = 3e-06
Identities = 22/35 (62%), Positives = 32/35 (91%)
Frame = -1

Query: 313 VAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209
++K+I F++++R A++AG+DKLADAV VTLGPRGR
Sbjct: 1 MSKQIEFNETARRAMEAGVDKLADAVKVTLGPRGR 35


>sp|A4TEN6|CH602_MYCGI 60 kDa chaperonin 2 OS=Mycobacterium gilvum
(strain PYR-GCK) GN=groL2 PE=3 SV=1
Length = 541

Score = 50.8 bits (120), Expect = 3e-06
Identities = 22/35 (62%), Positives = 32/35 (91%)
Frame = -1

Query: 313 VAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209
++K+I F++++R A++AG+DKLADAV VTLGPRGR
Sbjct: 1 MSKQIEFNETARRAMEAGVDKLADAVKVTLGPRGR 35


tr_hit_id A7PQU6
Definition tr|A7PQU6|A7PQU6_VITVI Chromosome chr6 scaffold_25, whole genome shotgun sequence OS=Vitis vinifera
Align length 44
Score (bit) 71.6
E-value 2.0e-11
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920483|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_F03.
(472 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7PQU6|A7PQU6_VITVI Chromosome chr6 scaffold_25, whole genome... 72 2e-11
tr|A5B8H0|A5B8H0_VITVI Putative uncharacterized protein OS=Vitis... 72 2e-11
tr|B6SXW8|B6SXW8_MAIZE RuBisCO large subunit-binding protein sub... 70 5e-11
tr|A9T5W1|A9T5W1_PHYPA Predicted protein OS=Physcomitrella paten... 70 5e-11
tr|Q9ZTV1|Q9ZTV1_CANLI Chaperonin 60 alpha subunit OS=Canavalia ... 69 2e-10
tr|B8LQV7|B8LQV7_PICSI Putative uncharacterized protein OS=Picea... 69 2e-10
tr|Q9FXL5|Q9FXL5_AVIMR Chaperonin-60 alpha subunit OS=Avicennia ... 68 3e-10
tr|Q2QU06|Q2QU06_ORYSJ Os12g0277500 protein OS=Oryza sativa subs... 66 8e-10
tr|A2ZJH7|A2ZJH7_ORYSI Putative uncharacterized protein OS=Oryza... 66 8e-10
tr|Q2PEX5|Q2PEX5_TRIPR Putative rubisco subunit binding-protein ... 66 1e-09
tr|Q2PEW7|Q2PEW7_TRIPR Putative rubisco subunit binding-protein ... 66 1e-09
tr|Q2PEQ0|Q2PEQ0_TRIPR Putative rubisco subunit binding-protein ... 66 1e-09
tr|Q2PEP1|Q2PEP1_TRIPR Putative rubisco subunit binding-protein ... 66 1e-09
tr|B7FM02|B7FM02_MEDTR Putative uncharacterized protein OS=Medic... 65 1e-09
tr|Q8L5U4|Q8L5U4_ARATH Putative rubisco subunit binding-protein ... 64 4e-09
tr|A9SSR9|A9SSR9_PHYPA Predicted protein OS=Physcomitrella paten... 64 5e-09
tr|A4S614|A4S614_OSTLU Chaperonin 60 alpha chain, chloroplast OS... 64 5e-09
tr|A8JIB7|A8JIB7_CHLRE Chaperonin 60A OS=Chlamydomonas reinhardt... 63 6e-09
tr|Q84P86|Q84P86_ORYSJ Putative chaperonin 60 alpha subunit (Fra... 61 3e-08
tr|Q7X9A7|Q7X9A7_ORYSJ Putative rubisco subunit binding-protein ... 61 3e-08
tr|Q0DLK5|Q0DLK5_ORYSJ Os03g0859700 protein (Fragment) OS=Oryza ... 61 3e-08
tr|A2XPB4|A2XPB4_ORYSI Putative uncharacterized protein OS=Oryza... 61 3e-08
tr|Q00XK6|Q00XK6_OSTTA RuBisCO subunit binding-protein alpha sub... 60 4e-08
tr|Q56XV8|Q56XV8_ARATH Chaperonin 60 alpha chain-like protein OS... 57 5e-07
tr|Q5IX17|Q5IX17_PROWI Plastid 60 kDa chaperonin alpha subunit (... 57 6e-07
tr|A7P2R7|A7P2R7_VITVI Chromosome chr1 scaffold_5, whole genome ... 54 5e-06
tr|Q2MGR4|Q2MGR4_MEDTR GroEL-like chaperone, ATPase OS=Medicago ... 52 1e-05
tr|B1B8X4|B1B8X4_CLOBO 60 kDa chaperonin OS=Clostridium botulinu... 52 2e-05
tr|B1TYB7|B1TYB7_MICLU Chaperonin GroEL OS=Micrococcus luteus NC... 50 4e-05
tr|B3ENV7|B3ENV7_CHLPB Chaperonin GroEL OS=Chlorobium phaeobacte... 50 6e-05

>tr|A7PQU6|A7PQU6_VITVI Chromosome chr6 scaffold_25, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00022204001
PE=3 SV=1
Length = 582

Score = 71.6 bits (174), Expect = 2e-11
Identities = 36/44 (81%), Positives = 40/44 (90%)
Frame = -1

Query: 340 SHPRLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209
S+ R +VRA AKEI FDQSSR+ALQAGIDKLADAVG+TLGPRGR
Sbjct: 34 SNNRFVVRASAKEIAFDQSSRAALQAGIDKLADAVGLTLGPRGR 77


>tr|A5B8H0|A5B8H0_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_037064 PE=3 SV=1
Length = 576

Score = 71.6 bits (174), Expect = 2e-11
Identities = 36/44 (81%), Positives = 40/44 (90%)
Frame = -1

Query: 340 SHPRLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209
S+ R +VRA AKEI FDQSSR+ALQAGIDKLADAVG+TLGPRGR
Sbjct: 38 SNNRFVVRASAKEIAFDQSSRAALQAGIDKLADAVGLTLGPRGR 81


>tr|B6SXW8|B6SXW8_MAIZE RuBisCO large subunit-binding protein
subunit alpha OS=Zea mays PE=2 SV=1
Length = 584

Score = 70.1 bits (170), Expect = 5e-11
Identities = 37/55 (67%), Positives = 44/55 (80%)
Frame = -1

Query: 373 RVPCLDSRKQHSHPRLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209
R+P + R+ P+LLVRA AKEI FDQ SR+ALQAG++KLA AVGVTLGPRGR
Sbjct: 32 RLPAVARRR----PQLLVRASAKEIAFDQGSRAALQAGVEKLAAAVGVTLGPRGR 82


>tr|A9T5W1|A9T5W1_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_191937 PE=3 SV=1
Length = 583

Score = 70.1 bits (170), Expect = 5e-11
Identities = 34/47 (72%), Positives = 42/47 (89%)
Frame = -1

Query: 349 KQHSHPRLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209
++ ++ +L+V + AKEI+FDQ SRSALQAGIDKLADAVGVTLGPRGR
Sbjct: 30 RRGNNSKLVVTSAAKEILFDQESRSALQAGIDKLADAVGVTLGPRGR 76


>tr|Q9ZTV1|Q9ZTV1_CANLI Chaperonin 60 alpha subunit OS=Canavalia
lineata PE=2 SV=1
Length = 581

Score = 68.6 bits (166), Expect = 2e-10
Identities = 35/47 (74%), Positives = 41/47 (87%)
Frame = -1

Query: 349 KQHSHPRLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209
+Q +H R V+A AKEI FDQSSR+A+QAGIDKLADAVG+TLGPRGR
Sbjct: 34 RQPNH-RFAVKASAKEIAFDQSSRAAIQAGIDKLADAVGLTLGPRGR 79


>tr|B8LQV7|B8LQV7_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 598

Score = 68.6 bits (166), Expect = 2e-10
Identities = 33/47 (70%), Positives = 41/47 (87%)
Frame = -1

Query: 349 KQHSHPRLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209
+ S+ R+LVRA AK+I+FDQ SR+++Q GIDKLADAVGVTLGPRGR
Sbjct: 47 RARSNSRVLVRASAKDILFDQDSRASVQRGIDKLADAVGVTLGPRGR 93


>tr|Q9FXL5|Q9FXL5_AVIMR Chaperonin-60 alpha subunit OS=Avicennia
marina GN=chpa PE=2 SV=1
Length = 326

Score = 67.8 bits (164), Expect = 3e-10
Identities = 33/47 (70%), Positives = 39/47 (82%)
Frame = -1

Query: 349 KQHSHPRLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209
++ + R +VRA AKEI FDQ SRSA+Q GIDKLADAVG+TLGPRGR
Sbjct: 38 QKQAKSRFVVRADAKEIAFDQKSRSAMQTGIDKLADAVGLTLGPRGR 84


>tr|Q2QU06|Q2QU06_ORYSJ Os12g0277500 protein OS=Oryza sativa subsp.
japonica GN=Os12g0277500 PE=1 SV=1
Length = 578

Score = 66.2 bits (160), Expect = 8e-10
Identities = 32/41 (78%), Positives = 38/41 (92%)
Frame = -1

Query: 331 RLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209
RL+VRA AK+I FDQ SR+ALQAG++KLA+AVGVTLGPRGR
Sbjct: 32 RLVVRADAKDIAFDQKSRAALQAGVEKLANAVGVTLGPRGR 72


>tr|A2ZJH7|A2ZJH7_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_37967 PE=3 SV=1
Length = 578

Score = 66.2 bits (160), Expect = 8e-10
Identities = 32/41 (78%), Positives = 38/41 (92%)
Frame = -1

Query: 331 RLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209
RL+VRA AK+I FDQ SR+ALQAG++KLA+AVGVTLGPRGR
Sbjct: 32 RLVVRADAKDIAFDQKSRAALQAGVEKLANAVGVTLGPRGR 72


>tr|Q2PEX5|Q2PEX5_TRIPR Putative rubisco subunit binding-protein
alpha subunit (Fragment) OS=Trifolium pratense PE=2 SV=1
Length = 578

Score = 65.9 bits (159), Expect = 1e-09
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = -1

Query: 331 RLLVRAVAKEIVFDQSSRSALQAGIDKLADAVGVTLGPRGR 209
R +V+A AK+I FDQ SR A+QAGIDKLADAVG+TLGPRGR
Sbjct: 33 RFMVKAAAKDIAFDQHSRRAMQAGIDKLADAVGLTLGPRGR 73