BP920484 [AcEST]

BP920484
Clone id	YMU001_000137_F04
Library	YMU01
Length	540
Definition	Adiantum capillus-veneris mRNA. clone: YMU001_000137_F04.
Accession	BP920484
Tissue type	prothallium
Developmental stage	-
Contig ID	CL34Contig1
Sequence	TTGATGGAGCCCCGTGCTTGGCCACGGGATTAATGTTAAGCACTGTTCTGTTCGTAAAGA CCGTTCCATCAACTTTCATTGCCTTGCGGCTATCCGATGCTGATGCAGTGACATGAAGCG GGAGGTGGTTTGCACGGCAGGAACTACCAAAGCTCACGTTGGTGGAGGATGTAGGGAAAG GAACGCAAGGTAGCTGGGTGAGGGAATTCAAGAGGGAAGAGCTCTGGCAAGCACTTCGAG CTGCCATTGCCAAAATGTGGCTTCGGAGGTGAGAAGCCGCAGAGGGAGGAGGAGGAAGAA GAGGCCCTAGCCTCTGCACGTGCGATGGTTGGGTGATCGAGTCGAATAGCCCACCGTGCT GATTCACGCGATTGAGCCTTCTCGCTGTCGAGAGCTGCAGTGGAGGAGCTGCCGCTGCGT GTGCGCCACCACGCGAGTCCGCGCTACAGACGGATGCGAGGTGATGCAGCCGGCAACGAC GAGCCAGAAGCGGCAGCTGTGGCTGCGCGAAGACAAAGCAGCGTGCTGACAAATGGCGGG
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	-
Definition	No hits.
Align length	-
Score (bit)	-
E-value	-
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BP920484\|Adiantum capillus-veneris mRNA, clone: YMU001_000137_F04. (540 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done *** No hits found ****
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	A5CUP1
Definition	tr\|A5CUP1\|A5CUP1_CLAM3 Conserved hypothetical protein OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)
Align length	82
Score (bit)	33.5
E-value	7.3
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BP920484\|Adiantum capillus-veneris mRNA, clone: YMU001_000137_F04. (540 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|A5CUP1\|A5CUP1_CLAM3 Conserved hypothetical protein OS=Claviba... 33 7.3 >tr\|A5CUP1\|A5CUP1_CLAM3 Conserved hypothetical protein OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=CMM_2744 PE=4 SV=1 Length = 237 Score = 33.5 bits (75), Expect = 7.3 Identities = 23/82 (28%), Positives = 34/82 (41%) Frame = +3 Query: 12 PCLATGLMLSTVLFVKTVPSTFIALRLSDADAVT*SGRWFARQELPKLTLVEDVGKGTQG 191 P + GL L V +SDA ++ R ARQ L + L +V + G Sbjct: 119 PLVVAGLSLGAVDLYSRTARDISTQEVSDATTLS---RIVARQVLRRALLAAEVRQEETG 175 Query: 192 SWVREFKREELWQALRAAIAKM 257 W + R E+ QA +A+M Sbjct: 176 GWEGRYSRREVHQATGMVVAQM 197