NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920490
Clone id YMU001_000137_F11
Library
Length 541
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000137_F11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CACGGTCCACCAACGTATGGCCAGCCGAGTCATGTGTCGGGGAGTTCAGAGATCAGGATT
GGCCCGCTATTGCACAATCTCTTCAGAAGGCGCTGCAGCAGAGTCCGCGTCAGAGACAGT
TTCTAACACAGGATTGTCTGTTGTCGATTTCTTGAAAAGCATAGGCCATGGGGTGGAGGC
TCATGCTGAAAAGATTGCAAAGAAGGTCGAAACCTTGGATGAACTGCTGCTTATTAGAAG
AATGAAACTTAAAAAGATTGAAGTGCCTTGTAAACAGAGGAAGATGATTATGCGCTACAC
AGAAAAATATAGACAAAACCTTTGGCGACCTAAGGTGGCTGAATCCTCCTGAGTGTGGTG
GTTGAGTATAGGAGCATATTGGCGACGGAAATGATATCATCGCTGACTGCACAGAGATCC
TATTGTATTGCAGGAGGTCCTTAGTAGCTGAAAATCTTGCTCATAGCTTTTGTATCTCGT
GCTCCGAGGCTTGAAGTCTTGAACTTAATAGCTGGGTATGAAAAACACTTATGTCCACTG
T
■■Homology search results ■■ -
sp_hit_id Q9GYU8
Definition sp|Q9GYU8|NUP88_DROME Nuclear pore complex protein Nup88 OS=Drosophila melanogaster
Align length 54
Score (bit) 33.1
E-value 0.84
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920490|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_F11.
         (527 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9GYU8|NUP88_DROME Nuclear pore complex protein Nup88 OS=Dros...    33   0.84 
sp|P31383|2AAA_YEAST Protein phosphatase PP2A regulatory subunit...    32   2.4  
sp|Q66KD0|BTBDH_XENTR BTB/POZ domain-containing protein 17 OS=Xe...    31   3.2  
sp|P70958|YWMA_BACSU Uncharacterized protein ywmA OS=Bacillus su...    30   7.1  

>sp|Q9GYU8|NUP88_DROME Nuclear pore complex protein Nup88
           OS=Drosophila melanogaster GN=mbo PE=1 SV=2
          Length = 702

 Score = 33.1 bits (74), Expect = 0.84
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 274 FTRHFNLFKFHSSNKQQFIQGFDLLCNLFSMSLHPMAYAFQEID-NRQSCVRNC 116
           FTRH N  +     + Q IQ  +    L S   H +A  F+EI  N++  VR C
Sbjct: 547 FTRHINQIQLKKEQQLQEIQDLEQERELISERAHKLAERFEEISYNQELLVRKC 600


>sp|P31383|2AAA_YEAST Protein phosphatase PP2A regulatory subunit A
           OS=Saccharomyces cerevisiae GN=TPD3 PE=1 SV=2
          Length = 635

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 36  VGEFRDQDWPAIAQSLQKALQQSPRQRQFLTQDCLLSI 149
           +G   D+DW  I+   QK +  +    +FL  DCL+SI
Sbjct: 228 LGLSTDEDWDYISNIFQKIINDNQDSVKFLAVDCLISI 265


>sp|Q66KD0|BTBDH_XENTR BTB/POZ domain-containing protein 17
           OS=Xenopus tropicalis GN=btbd17 PE=2 SV=1
          Length = 468

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
 Frame = -2

Query: 514 QLLSSRLQASEHEIQKL*ARFSATKDLLQYNRIS---VQSAMISFPSPICSYTQPPHSGG 344
           +L+ S LQ S+  +Q     FSA ++ +  N+     ++  + S   P+ S +Q      
Sbjct: 201 KLMVSLLQRSDLVLQSELELFSAVEEWISKNKPDAPVIEKVLRSIRYPMISPSQL----- 255

Query: 343 FSHLRSPKVLSIFFCVAHNHLPLFTRHFNLFKFHSSNKQQFIQGFDLLCNLF 188
           F   +   VL+ +      H  +    F  F+FHS++   F + FD+ C++F
Sbjct: 256 FQIQKESAVLASY------HNSVQDLMFQAFQFHSASPLHFAKYFDVNCSMF 301


>sp|P70958|YWMA_BACSU Uncharacterized protein ywmA OS=Bacillus
           subtilis GN=ywmA PE=4 SV=2
          Length = 157

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -2

Query: 283 LPLFTRHFNLFKFHSSNKQQFIQGFDLLCNLFSMSLHPMAYAFQEIDN 140
           LP+F + +    F+   +Q  I+  + LC  F++SL     + +E++N
Sbjct: 16  LPIFDQEWEAIAFYYDYRQSQIEELNELCQFFNISLTYTRESLEELEN 63
tr_hit_id A9NYC5
Definition tr|A9NYC5|A9NYC5_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 63
Score (bit) 70.1
E-value 7.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920490|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_F11.
         (527 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NYC5|A9NYC5_PICSI Putative uncharacterized protein OS=Picea...    70   7e-11
tr|B8LNF1|B8LNF1_PICSI Putative uncharacterized protein OS=Picea...    70   8e-11
tr|A9TPS4|A9TPS4_PHYPA Predicted protein OS=Physcomitrella paten...    61   3e-08
tr|A9PB74|A9PB74_POPTR Putative uncharacterized protein OS=Popul...    58   3e-07
tr|A9P9C2|A9P9C2_POPTR Putative uncharacterized protein OS=Popul...    58   3e-07
tr|A7PRP8|A7PRP8_VITVI Chromosome chr14 scaffold_27, whole genom...    57   6e-07
tr|A5AME9|A5AME9_VITVI Putative uncharacterized protein OS=Vitis...    57   6e-07
tr|B6TT08|B6TT08_MAIZE Putative uncharacterized protein OS=Zea m...    55   2e-06
tr|Q9M9L5|Q9M9L5_ARATH F10A16.10 protein OS=Arabidopsis thaliana...    55   2e-06
tr|B8BFR6|B8BFR6_ORYSI Putative uncharacterized protein OS=Oryza...    55   2e-06
tr|Q6IDB8|Q6IDB8_ARATH At5g26800 OS=Arabidopsis thaliana PE=4 SV=1     55   3e-06
tr|Q8LC40|Q8LC40_ARATH Putative uncharacterized protein (Putativ...    54   4e-06
tr|B6T5G5|B6T5G5_MAIZE Putative uncharacterized protein OS=Zea m...    53   8e-06
tr|Q5JL41|Q5JL41_ORYSJ cDNA clone:002-133-F06, full insert seque...    53   1e-05
tr|B8A6P3|B8A6P3_ORYSI Putative uncharacterized protein OS=Oryza...    53   1e-05
tr|B6T197|B6T197_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.21 
tr|B6SHS3|B6SHS3_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.61 
tr|A7GY73|A7GY73_CAMC5 Putative uncharacterized protein OS=Campy...    37   0.80 
tr|A6SHY1|A6SHY1_BOTFB Predicted protein OS=Botryotinia fuckelia...    35   3.0  
tr|Q75JN4|Q75JN4_DICDI Putative uncharacterized protein OS=Dicty...    33   6.7  
tr|B4QS78|B4QS78_DROSI GD20552 OS=Drosophila simulans GN=GD20552...    33   6.7  
tr|B4HGU4|B4HGU4_DROSE GM25992 OS=Drosophila sechellia GN=GM2599...    33   6.7  
tr|B3RYL7|B3RYL7_TRIAD Putative uncharacterized protein OS=Trich...    33   6.7  
tr|B3M1W8|B3M1W8_DROAN GF17877 OS=Drosophila ananassae GN=GF1787...    33   8.8  
tr|A1CD60|A1CD60_ASPCL Putative uncharacterized protein OS=Asper...    33   8.8  

>tr|A9NYC5|A9NYC5_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 116

 Score = 70.1 bits (170), Expect = 7e-11
 Identities = 30/63 (47%), Positives = 43/63 (68%)
 Frame = +2

Query: 146 DFLKSIGHGVEAHAEKIAKKVETLDEXXXXXXXXXXXXEVPCKQRKMIMRYTEKYRQNLW 325
           DFLK++G+GVEAH+EK+A +V  L +             +PCK RK+I+R+T+KYR  LW
Sbjct: 48  DFLKAVGNGVEAHSEKLANEVGDLQKLLETRTMTLKKLGIPCKHRKLILRFTQKYRLGLW 107

Query: 326 RPK 334
           RP+
Sbjct: 108 RPR 110


>tr|B8LNF1|B8LNF1_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 116

 Score = 69.7 bits (169), Expect = 8e-11
 Identities = 29/63 (46%), Positives = 43/63 (68%)
 Frame = +2

Query: 146 DFLKSIGHGVEAHAEKIAKKVETLDEXXXXXXXXXXXXEVPCKQRKMIMRYTEKYRQNLW 325
           DFLK++G+GVEAH+EK+A +V  L +             +PCK RK+++R+T+KYR  LW
Sbjct: 48  DFLKAVGNGVEAHSEKLANEVGDLQKLLETRTMTLKKLGIPCKHRKLVLRFTQKYRLGLW 107

Query: 326 RPK 334
           RP+
Sbjct: 108 RPR 110


>tr|A9TPS4|A9TPS4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_171254 PE=4 SV=1
          Length = 246

 Score = 61.2 bits (147), Expect = 3e-08
 Identities = 30/69 (43%), Positives = 41/69 (59%)
 Frame = +2

Query: 134 LSVVDFLKSIGHGVEAHAEKIAKKVETLDEXXXXXXXXXXXXEVPCKQRKMIMRYTEKYR 313
           + V DF+ SI  G E HA KIA+ +  +               +PCKQRKMI+RYTEKYR
Sbjct: 176 IGVQDFVNSI-KGAEPHAAKIAQAIFGVPSLLQTRSSRLKKMGIPCKQRKMILRYTEKYR 234

Query: 314 QNLWRPKVA 340
           Q +W P+++
Sbjct: 235 QGIWTPRMS 243


>tr|A9PB74|A9PB74_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 117

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 24/67 (35%), Positives = 37/67 (55%)
 Frame = +2

Query: 134 LSVVDFLKSIGHGVEAHAEKIAKKVETLDEXXXXXXXXXXXXEVPCKQRKMIMRYTEKYR 313
           + + +FL  IG GVEAH  K+  ++    +             +PC+QRK+I++Y  KYR
Sbjct: 44  VGIPEFLNGIGKGVEAHVAKLESEIGDFHKLLVTRTLKLKKLGIPCQQRKLILKYAHKYR 103

Query: 314 QNLWRPK 334
             LWRP+
Sbjct: 104 LGLWRPR 110


>tr|A9P9C2|A9P9C2_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 117

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 24/67 (35%), Positives = 37/67 (55%)
 Frame = +2

Query: 134 LSVVDFLKSIGHGVEAHAEKIAKKVETLDEXXXXXXXXXXXXEVPCKQRKMIMRYTEKYR 313
           + + +FL  IG GVEAH  K+  ++    +             +PC+QRK+I++Y  KYR
Sbjct: 44  VGIPEFLNGIGKGVEAHVTKLESEIGDFHKLLVTRTLKLKKLGIPCQQRKLILKYAHKYR 103

Query: 314 QNLWRPK 334
             LWRP+
Sbjct: 104 VGLWRPR 110


>tr|A7PRP8|A7PRP8_VITVI Chromosome chr14 scaffold_27, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00022586001
           PE=4 SV=1
          Length = 98

 Score = 57.0 bits (136), Expect = 6e-07
 Identities = 24/67 (35%), Positives = 36/67 (53%)
 Frame = +2

Query: 134 LSVVDFLKSIGHGVEAHAEKIAKKVETLDEXXXXXXXXXXXXEVPCKQRKMIMRYTEKYR 313
           + + +FL  IG GVE H  K+  ++    +             +PCK RK+I+R+T KYR
Sbjct: 23  VGIPEFLNGIGKGVETHVAKLETEIGDFQKLLVTRTLRLKKLGIPCKHRKLILRHTHKYR 82

Query: 314 QNLWRPK 334
             LWRP+
Sbjct: 83  LGLWRPR 89


>tr|A5AME9|A5AME9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_026720 PE=4 SV=1
          Length = 108

 Score = 57.0 bits (136), Expect = 6e-07
 Identities = 24/67 (35%), Positives = 36/67 (53%)
 Frame = +2

Query: 134 LSVVDFLKSIGHGVEAHAEKIAKKVETLDEXXXXXXXXXXXXEVPCKQRKMIMRYTEKYR 313
           + + +FL  IG GVE H  K+  ++    +             +PCK RK+I+R+T KYR
Sbjct: 33  VGIPEFLNGIGKGVETHVAKLETEIGDFQKLLVTRTLRLKKLGIPCKHRKLILRHTHKYR 92

Query: 314 QNLWRPK 334
             LWRP+
Sbjct: 93  LGLWRPR 99


>tr|B6TT08|B6TT08_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 104

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = +2

Query: 134 LSVVDFLKSIGHGVEAHAEKIAKKVE-TLDEXXXXXXXXXXXXEVPCKQRKMIMRYTEKY 310
           + VV+FL  +G GVEAHA K+ + V   L               +PCK RK+I+ +  KY
Sbjct: 30  VGVVEFLNGVGKGVEAHAAKLEEAVGGDLQRLLEARTLRLKKLGIPCKHRKLILSFAHKY 89

Query: 311 RQNLWRPK 334
           R  LW+PK
Sbjct: 90  RLGLWKPK 97


>tr|Q9M9L5|Q9M9L5_ARATH F10A16.10 protein OS=Arabidopsis thaliana
           GN=F10A16.10 PE=4 SV=1
          Length = 164

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
 Frame = +2

Query: 119 VSNTGLSVV-----DFLKSIGHGVEAHAEKIAKKVETLDEXXXXXXXXXXXXEVPCKQRK 283
           VSN  L +V     +FL  IG G E H  KI  ++  L +             +PCK RK
Sbjct: 82  VSNLNLVLVKVGIPEFLGGIGRGAETHIAKIETEIGDLHKLLVTRTLRLKKLGIPCKHRK 141

Query: 284 MIMRYTEKYRQNLWRPK 334
           +I++Y +KYR  LW+P+
Sbjct: 142 LILKYGQKYRLGLWKPR 158


>tr|B8BFR6|B8BFR6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_32755 PE=4 SV=1
          Length = 104

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +2

Query: 134 LSVVDFLKSIGHGVEAHAEKIAKKVE-TLDEXXXXXXXXXXXXEVPCKQRKMIMRYTEKY 310
           + VV+FL  +G GVE HA K+ + V   L               +PCKQRK+I+ +  KY
Sbjct: 30  VGVVEFLNGVGKGVETHAAKVEEAVGGDLQSLLHARTLRLKKLGIPCKQRKLILSFAHKY 89

Query: 311 RQNLWRPKVAES 346
           R  LW+P+ AES
Sbjct: 90  RLGLWKPQ-AES 100