| BP920495 |
| Clone id |
YMU001_000137_G04 |
| Library |
YMU01 |
| Length |
495 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000137_G04. |
| Accession |
BP920495 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
CL2235Contig1 |
| Sequence |
ATTTCTCCCTAAGGGAAAATGACGTAGCGGTTTGATTCATTTACATGGTCAGTGAATCAT CTAGCTGCTAAATTACTTAGCAAAAAGTATCAAAAGAGAAATCTTGCATCAATGCAAATG CTACTGATGCATGTTACCTTACTGCACGACCAACATAAATCTTGAACAGTGACCCAATTG CCTTATAAAAGTGTCAGTCTTTATTCTGAGCAAGGTTACTACTCCCTGGCTGATCAATGA AACATGCACCCGAATTTAAATTTACTTACTTTCGCCTCTTCCGCACACCTTTGCAAATCT TGAATCTGACCTGCATTCTCCCACATTCCCATGTCAGCATACAATGCTGACATCAGCTCG TAGGCGGAGCTGCACTGGTCGTTAAGAGAGAGTATATGATCAAAGCACTTCCTTCCTAGA TATACATCACCATATGTTTTGCAGTGGCTAAGCAAAGAACACCAAGCTTGAACATTGTCC CTCATCGATCCAATA |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q9LFI1 |
| Definition |
sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana |
| Align length |
73 |
| Score (bit) |
52.4 |
| E-value |
1.0e-06 |
| Report |
 |
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
B3U1U3 |
| Definition |
tr|B3U1U3|B3U1U3_ISOEN Pentatricopeptide repeat protein (Fragment) OS=Isoetes engelmannii |
| Align length |
61 |
| Score (bit) |
65.1 |
| E-value |
2.0e-09 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920495|Adiantum capillus-veneris mRNA, clone: YMU001_000137_G04. (495 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B3U1U3|B3U1U3_ISOEN Pentatricopeptide repeat protein (Fragmen... 65 2e-09 tr|B3U1U2|B3U1U2_ISOEN Pentatricopeptide repeat protein (Fragmen... 64 3e-09 tr|B8LLJ0|B8LLJ0_PICSI Putative uncharacterized protein OS=Picea... 58 2e-07 tr|Q8S1M4|Q8S1M4_ORYSJ Pentatricopeptide (PPR) repeat-containing... 56 8e-07 tr|A2WUG2|A2WUG2_ORYSI Putative uncharacterized protein OS=Oryza... 56 8e-07 tr|B7ZXR7|B7ZXR7_MAIZE Putative uncharacterized protein OS=Zea m... 55 2e-06 tr|B6U738|B6U738_MAIZE CRR4 OS=Zea mays PE=2 SV=1 55 2e-06 tr|A7P886|A7P886_VITVI Chromosome chr3 scaffold_8, whole genome ... 55 2e-06 tr|A7PNA8|A7PNA8_VITVI Chromosome chr1 scaffold_22, whole genome... 54 5e-06 tr|A7PD58|A7PD58_VITVI Chromosome chr17 scaffold_12, whole genom... 52 2e-05 tr|A9PHW8|A9PHW8_POPTR Putative uncharacterized protein OS=Popul... 52 2e-05 tr|A7PSU8|A7PSU8_VITVI Chromosome chr8 scaffold_29, whole genome... 52 2e-05 tr|A7PSZ8|A7PSZ8_VITVI Chromosome chr8 scaffold_29, whole genome... 51 3e-05 tr|A7QJK4|A7QJK4_VITVI Chromosome chr8 scaffold_106, whole genom... 51 3e-05 tr|A7PQ60|A7PQ60_VITVI Chromosome chr18 scaffold_24, whole genom... 51 3e-05 tr|A7PUR6|A7PUR6_VITVI Chromosome chr4 scaffold_32, whole genome... 50 4e-05 tr|A5BWB7|A5BWB7_VITVI Putative uncharacterized protein OS=Vitis... 50 4e-05 tr|A5B3U0|A5B3U0_VITVI Putative uncharacterized protein OS=Vitis... 50 4e-05 tr|B8BK26|B8BK26_ORYSI Putative uncharacterized protein OS=Oryza... 50 6e-05 tr|B4F908|B4F908_MAIZE Putative uncharacterized protein OS=Zea m... 50 6e-05 tr|A7P5J4|A7P5J4_VITVI Chromosome chr4 scaffold_6, whole genome ... 50 6e-05 tr|Q6ZH58|Q6ZH58_ORYSJ cDNA clone:J023139G21, full insert sequen... 50 8e-05 tr|Q6ZH57|Q6ZH57_ORYSJ Pentatricopeptide (PPR) repeat-containing... 50 8e-05 tr|Q6Z996|Q6Z996_ORYSJ Putative pentatricopeptide (PPR) repeat-c... 50 8e-05 tr|Q53Q87|Q53Q87_ORYSJ Pentatricopeptide, putative, expressed OS... 50 8e-05 tr|Q0J729|Q0J729_ORYSJ Os08g0238100 protein OS=Oryza sativa subs... 50 8e-05 tr|Q0ITB9|Q0ITB9_ORYSJ Os11g0275400 protein OS=Oryza sativa subs... 50 8e-05 tr|Q0DX78|Q0DX78_ORYSJ Os02g0769900 protein (Fragment) OS=Oryza ... 50 8e-05 tr|B8AG74|B8AG74_ORYSI Putative uncharacterized protein OS=Oryza... 50 8e-05 tr|A9P0W0|A9P0W0_PICSI Putative uncharacterized protein OS=Picea... 50 8e-05
>tr|B3U1U3|B3U1U3_ISOEN Pentatricopeptide repeat protein (Fragment) OS=Isoetes engelmannii GN=PPR PE=4 SV=1 Length = 155
Score = 65.1 bits (157), Expect = 2e-09 Identities = 27/61 (44%), Positives = 44/61 (72%) Frame = -2
Query: 464 WCSLLSHCKTYGDVYLGRKCFDHILSLNDQCSSAYELMSALYADMGMWENAGQIQDLQRC 285 W +LL+ C+TYG V LGR+CF+ ++ ++ + AY LMS +Y+D G+WE A +I +L++ Sbjct: 1 WRTLLAACRTYGHVELGRRCFNQVVPIDPYHAGAYVLMSGIYSDSGLWEEALKIDELRQY 60
Query: 284 A 282 A Sbjct: 61 A 61
>tr|B3U1U2|B3U1U2_ISOEN Pentatricopeptide repeat protein (Fragment) OS=Isoetes engelmannii GN=PPR PE=4 SV=1 Length = 155
Score = 64.3 bits (155), Expect = 3e-09 Identities = 25/56 (44%), Positives = 42/56 (75%) Frame = -2
Query: 464 WCSLLSHCKTYGDVYLGRKCFDHILSLNDQCSSAYELMSALYADMGMWENAGQIQD 297 W LL+ C+T+G++ +GR+CF IL ++ +SAY LMS++Y+D MWE+A +++D Sbjct: 1 WTPLLAACRTFGNLEMGRRCFQRILHMDSYNASAYMLMSSIYSDCNMWEHAKKLED 56
>tr|B8LLJ0|B8LLJ0_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 644
Score = 58.2 bits (139), Expect = 2e-07 Identities = 28/80 (35%), Positives = 48/80 (60%) Frame = -2
Query: 485 MRDNVQAWCSLLSHCKTYGDVYLGRKCFDHILSLNDQCSSAYELMSALYADMGMWENAGQ 306 ++ + W SLLS C+T+ ++ LG K H+++LN Q + Y L+S +YA G W++ G Sbjct: 553 IKPDADMWGSLLSACRTHNNIDLGEKVAQHLIALNPQNPAPYVLLSNIYAAAGRWDDIGS 612
Query: 305 IQDLQRCAEEAKVSKFKFGC 246 +++ + + KV K K GC Sbjct: 613 VRNRMK---DRKVKK-KLGC 628
>tr|Q8S1M4|Q8S1M4_ORYSJ Pentatricopeptide (PPR) repeat-containing protein-like (Putative uncharacterized protein) (Os01g0715900 protein) OS=Oryza sativa subsp. japonica GN=P0683B11.6 PE=4 SV=1 Length = 608
Score = 56.2 bits (134), Expect = 8e-07 Identities = 27/75 (36%), Positives = 41/75 (54%) Frame = -2
Query: 476 NVQAWCSLLSHCKTYGDVYLGRKCFDHILSLNDQCSSAYELMSALYADMGMWENAGQIQD 297 N W +LLS C+ + DV L + +L L SS Y L+S +YAD G+W + +I+D Sbjct: 485 NAVIWSTLLSACRAHADVELAKLAASKLLVLEPDNSSIYVLLSNIYADAGLWGDVREIRD 544
Query: 296 LQRCAEEAKVSKFKF 252 L R K+S + + Sbjct: 545 LMRSKNVQKLSAYSW 559
>tr|A2WUG2|A2WUG2_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_03512 PE=4 SV=1 Length = 608
Score = 56.2 bits (134), Expect = 8e-07 Identities = 27/75 (36%), Positives = 41/75 (54%) Frame = -2
Query: 476 NVQAWCSLLSHCKTYGDVYLGRKCFDHILSLNDQCSSAYELMSALYADMGMWENAGQIQD 297 N W +LLS C+ + DV L + +L L SS Y L+S +YAD G+W + +I+D Sbjct: 485 NAVIWSTLLSACRAHADVELAKLAASKLLVLEPDNSSIYVLLSNIYADAGLWGDVREIRD 544
Query: 296 LQRCAEEAKVSKFKF 252 L R K+S + + Sbjct: 545 LMRSKNVQKLSAYSW 559
>tr|B7ZXR7|B7ZXR7_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 601
Score = 55.1 bits (131), Expect = 2e-06 Identities = 26/75 (34%), Positives = 41/75 (54%) Frame = -2
Query: 476 NVQAWCSLLSHCKTYGDVYLGRKCFDHILSLNDQCSSAYELMSALYADMGMWENAGQIQD 297 N W +LLS C+ + DV L + ++ L SS Y L+S +YAD G+W + +I+D Sbjct: 479 NAVIWTTLLSACRAHADVELAKLAAGKLVVLEPNSSSIYVLLSNIYADAGLWGDVREIRD 538
Query: 296 LQRCAEEAKVSKFKF 252 L R K+S + + Sbjct: 539 LMRSKNLQKLSAYSW 553
>tr|B6U738|B6U738_MAIZE CRR4 OS=Zea mays PE=2 SV=1 Length = 601
Score = 55.1 bits (131), Expect = 2e-06 Identities = 26/75 (34%), Positives = 41/75 (54%) Frame = -2
Query: 476 NVQAWCSLLSHCKTYGDVYLGRKCFDHILSLNDQCSSAYELMSALYADMGMWENAGQIQD 297 N W +LLS C+ + DV L + ++ L SS Y L+S +YAD G+W + +I+D Sbjct: 479 NAVIWTTLLSACRAHADVELAKLAAGKLVVLEPNSSSIYVLLSNIYADAGLWGDVREIRD 538
Query: 296 LQRCAEEAKVSKFKF 252 L R K+S + + Sbjct: 539 LMRSKNLQKLSAYSW 553
>tr|A7P886|A7P886_VITVI Chromosome chr3 scaffold_8, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00036086001 PE=4 SV=1 Length = 612
Score = 55.1 bits (131), Expect = 2e-06 Identities = 25/70 (35%), Positives = 44/70 (62%) Frame = -2
Query: 470 QAWCSLLSHCKTYGDVYLGRKCFDHILSLNDQCSSAYELMSALYADMGMWENAGQIQDLQ 291 + W +LL C+ +G + LGRK + ++ L Q S+AY L+S++YA +G WE+ +Q ++ Sbjct: 495 RVWNALLGVCRIHGHIELGRKAAERLIELEPQSSTAYVLLSSIYAVLGRWES---VQKVR 551
Query: 290 RCAEEAKVSK 261 + E +V K Sbjct: 552 QLMNERQVKK 561
>tr|A7PNA8|A7PNA8_VITVI Chromosome chr1 scaffold_22, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00021165001 PE=4 SV=1 Length = 697
Score = 53.5 bits (127), Expect = 5e-06 Identities = 21/59 (35%), Positives = 38/59 (64%) Frame = -2
Query: 476 NVQAWCSLLSHCKTYGDVYLGRKCFDHILSLNDQCSSAYELMSALYADMGMWENAGQIQ 300 +V W +LLS C+ +GD+ +G+ D +++L Q ++Y L+S+LYA G W+ Q++ Sbjct: 493 DVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLR 551
>tr|A7PD58|A7PD58_VITVI Chromosome chr17 scaffold_12, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00016149001 PE=4 SV=1 Length = 539
Score = 52.0 bits (123), Expect = 2e-05 Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 1/63 (1%) Frame = -2
Query: 485 MRDNVQAWCSLLSHCKTYGDVYLGRKCFDHILSL-NDQCSSAYELMSALYADMGMWENAG 309 M +V AW +LLS C+ +GDV LG + +HI L Y L+S LYA MG WE+ Sbjct: 331 MEPDVVAWRALLSACRIHGDVDLGERIINHIAELCPGSHGGGYVLLSNLYASMGQWESVT 390
Query: 308 QIQ 300 +++ Sbjct: 391 KVR 393
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