NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920498
Clone id YMU001_000137_G09
Library
Length 497
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000137_G09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTACTTACTTTGTAGAATATTTAAGTAAATGCTTCAAGTTTTGACCTAAAATCCGGCAGA
ATTTGACCTACTTGTACCATTCATTTGTTTGGCTAAGAAACGTATTTTGTTTGGCTGAGA
ATTAAAAACTAAAAACCTGTCAATGTAGACTTGACCAGGCAGCGCTCGAGAGGCGATGAA
GGCGTCGACAGTCGAGTAGCTCCACCAAAGCTGCCACAATAAGCCGATGGGACCAAGGGC
TTGGAGAAAGCGTTCAGCTGAAGATCAGGGCGCTCATATAATGCAACTGACGACGACGTA
ATGGAAGTCGAGCTGCTGCTTGCTTCATGCGGAGCGCCTTCTTGACGTCGCACAGGAGGG
CGGTTTGATTGCAGGCGATGCGCCAGAATAGATTAAGATGTGCACGCGCAGCAGCTATAT
TATTAAGTGATTAGGCTTATTGCTATTTAGCTAGGCTAGGTAGCACAAGGACATACTGCA
GATAATCAGACTGCGGT
■■Homology search results ■■ -
sp_hit_id O83460
Definition sp|O83460|ISPG_TREPA 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Treponema pallidum
Align length 45
Score (bit) 30.0
E-value 6.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920498|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_G09.
         (497 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O83460|ISPG_TREPA 4-hydroxy-3-methylbut-2-en-1-yl diphosphate...    30   6.1  
sp|Q8N7S6|CC071_HUMAN Uncharacterized protein C3orf71 OS=Homo sa...    30   6.1  
sp|Q4R539|FSD1_MACFA Fibronectin type III and SPRY domain-contai...    30   8.0  
sp|Q05B84|FSD1_BOVIN Fibronectin type III and SPRY domain-contai...    30   8.0  

>sp|O83460|ISPG_TREPA 4-hydroxy-3-methylbut-2-en-1-yl diphosphate
           synthase OS=Treponema pallidum GN=ispG PE=3 SV=1
          Length = 404

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 280 NATDDDVMEVELLLASCGAPS*RRTGG--RFDCRRCARID*DVHA 408
           ++ + +V+    +LA CG    +R GG     C RC RI  DVHA
Sbjct: 282 DSMEHEVLAAREILAECG----KRAGGVRLVSCPRCGRIGFDVHA 322


>sp|Q8N7S6|CC071_HUMAN Uncharacterized protein C3orf71 OS=Homo
           sapiens GN=C3orf71 PE=2 SV=1
          Length = 290

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -1

Query: 281 LYERPDLQLNAFSKPLVPSAYCGSFGGATRLSTPSSPLERCLVKSTLTGF*F 126
           L+    L+L+A ++ L       +  GAT +  P+SP+E  L  + LTGF F
Sbjct: 132 LFSAASLKLSALTQSLTRVRQAPTASGAT-IRLPASPVEMFLTSAFLTGFSF 182


>sp|Q4R539|FSD1_MACFA Fibronectin type III and SPRY
           domain-containing protein 1 OS=Macaca fascicularis
           GN=FSD1 PE=2 SV=2
          Length = 496

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -1

Query: 248 FSKPLVPS--AYCGSFGGATRLSTPSSPLERCLVK 150
           F++PL+P+   +CGSF   T L  PSS   RCL K
Sbjct: 451 FTQPLLPAFTVWCGSFQVTTGLQVPSS--VRCLQK 483


>sp|Q05B84|FSD1_BOVIN Fibronectin type III and SPRY
           domain-containing protein 1 OS=Bos taurus GN=FSD1 PE=2
           SV=1
          Length = 496

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -1

Query: 248 FSKPLVPS--AYCGSFGGATRLSTPSSPLERCLVK 150
           F++PL+P+   +CGSF   T L  PSS   RCL K
Sbjct: 451 FTQPLLPAFTVWCGSFHVTTGLQVPSS--VRCLQK 483
tr_hit_id A9V9C9
Definition tr|A9V9C9|A9V9C9_MONBE Predicted protein OS=Monosiga brevicollis
Align length 52
Score (bit) 35.4
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920498|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_G09.
         (497 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9V9C9|A9V9C9_MONBE Predicted protein OS=Monosiga brevicollis...    35   1.5  

>tr|A9V9C9|A9V9C9_MONBE Predicted protein OS=Monosiga brevicollis
           GN=28890 PE=4 SV=1
          Length = 1934

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
 Frame = -3

Query: 201 SYSTVDAFIASRALPGQVYIDRFLVFNSQPNKIRFLAKQ---MNGTSRSNSA 55
           S+S++D FIA R+  GQ+  +      S+PN +R  A +   +NG SR N++
Sbjct: 809 SFSSLDHFIAQRSSLGQIGSEPHAAARSEPNSLRASAGELHALNGVSRENAS 860