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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920499
Clone id YMU001_000137_G10
Library
Length 487
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000137_G10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCGATACAGAGCCAGACAACAGATTCGAGTCTGACGAATATTTCAAACCACTTTTCATAT
GTATTGCCAAATACAAAATCTAACAGATTGCAAGAGAGAGAAAAACAAGATTGTCTGCTC
TCTGAACACTTCGTGAATTGGATCCAGGAAGGGGATACACTTTGCTTCTAGCATATGTCG
TGCGCCGCTTCTAGCACCTTGTTCCTCCCAAATTCAAGTCCTTGGTGGAGCTGTATTATA
GTGACTCTCGATTCCTTGTATATTTATTCGTGCTGTATATCAATTTATTGATGGCGTTTT
AGATAACGCGCACCACCTACAATCACCCACCAGATGAAGCTTTGTACATACACCCTCCCT
TGACCAGCCAAGGATCATGCAGCTTCTAGCACAGAAGCCCAAGAAAGCTTTAGAGGCTGT
TTGAGCCTTTGCTTGGTAAATTTATCTGCTCCCTCAGCAAGAATTTTGACACACAGGTCA
CGCTCCT
■■Homology search results ■■ -
sp_hit_id Q09841
Definition sp|Q09841|PSB7_SCHPO Probable proteasome subunit beta type-7 OS=Schizosaccharomyces pombe
Align length 81
Score (bit) 34.3
E-value 0.31
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920499|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_G10.
         (487 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q09841|PSB7_SCHPO Probable proteasome subunit beta type-7 OS=...    34   0.31 
sp|Q8N859|ZN713_HUMAN Zinc finger protein 713 OS=Homo sapiens GN...    34   0.40 
sp|Q3Z4Y6|THII_SHISS Thiamine biosynthesis protein thiI OS=Shige...    31   2.6  
sp|Q83SG1|THII_SHIFL Thiamine biosynthesis protein thiI OS=Shige...    31   2.6  
sp|Q0T7G6|THII_SHIF8 Thiamine biosynthesis protein thiI OS=Shige...    31   2.6  
sp|Q32JI1|THII_SHIDS Thiamine biosynthesis protein thiI OS=Shige...    31   2.6  
sp|Q325H8|THII_SHIBS Thiamine biosynthesis protein thiI OS=Shige...    31   2.6  
sp|Q1RFB7|THII_ECOUT Thiamine biosynthesis protein thiI OS=Esche...    31   2.6  
sp|P77718|THII_ECOLI Thiamine biosynthesis protein thiI OS=Esche...    31   2.6  
sp|B1J026|THII_ECOLC Thiamine biosynthesis protein thiI OS=Esche...    31   2.6  
sp|Q8FKB7|THII_ECOL6 Thiamine biosynthesis protein thiI OS=Esche...    31   2.6  
sp|A1A892|THII_ECOK1 Thiamine biosynthesis protein thiI OS=Esche...    31   2.6  
sp|A7ZX76|THII_ECOHS Thiamine biosynthesis protein thiI OS=Esche...    31   2.6  
sp|A7ZIH7|THII_ECO24 Thiamine biosynthesis protein thiI OS=Esche...    31   2.6  
sp|A8AK31|THII_CITK8 Thiamine biosynthesis protein thiI OS=Citro...    31   2.6  
sp|Q8XE74|THII_ECO57 Thiamine biosynthesis protein thiI OS=Esche...    30   4.5  
sp|P55913|THII_SALTY Thiamine biosynthesis protein thiI OS=Salmo...    30   7.6  
sp|Q8Z8X1|THII_SALTI Thiamine biosynthesis protein thiI OS=Salmo...    30   7.6  
sp|A9MX06|THII_SALPB Thiamine biosynthesis protein thiI OS=Salmo...    30   7.6  
sp|Q5PFQ4|THII_SALPA Thiamine biosynthesis protein thiI OS=Salmo...    30   7.6  
sp|Q57SD9|THII_SALCH Thiamine biosynthesis protein thiI OS=Salmo...    30   7.6  
sp|A9MM39|THII_SALAR Thiamine biosynthesis protein thiI OS=Salmo...    30   7.6  

>sp|Q09841|PSB7_SCHPO Probable proteasome subunit beta type-7
           OS=Schizosaccharomyces pombe GN=SPAC23D3.07 PE=2 SV=1
          Length = 267

 Score = 34.3 bits (77), Expect = 0.31
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
 Frame = -2

Query: 429 KAQTASKAFLGFCARSCMILGWSREGV---------CTKLHLVGDCRWCALSKTPSIN*Y 277
           KA +     +G  A+ C++LG               C KLHL+    WCA + T +   +
Sbjct: 30  KATSTGTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEF 89

Query: 276 TARINIQGIESH--YNTAPPR 220
              +    IE H  Y    PR
Sbjct: 90  VTSMISSNIELHSLYTNRKPR 110


>sp|Q8N859|ZN713_HUMAN Zinc finger protein 713 OS=Homo sapiens
           GN=ZNF713 PE=2 SV=1
          Length = 430

 Score = 33.9 bits (76), Expect = 0.40
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +2

Query: 302 DNAHHLQSPTR*--SFVHTPSLDQPRIMQLLAQKPKKALEAV*AFAW*IYLLPQQEF*HT 475
           D+ H  + P+    +F HT SL QP+ M L  +KP K  E    F+  I+L+  Q   HT
Sbjct: 239 DHIHTAEKPSECGKAFSHTSSLSQPQ-MLLTGEKPYKCDECGKRFSQRIHLIQHQRI-HT 296

Query: 476 GHAP 487
           G  P
Sbjct: 297 GEKP 300


>sp|Q3Z4Y6|THII_SHISS Thiamine biosynthesis protein thiI OS=Shigella
           sonnei (strain Ss046) GN=thiI PE=3 SV=1
          Length = 482

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 186 GARHMLEAKCIPFLDPIHEVFREQTILFFSLLQSVRFCI 70
           G  H+LE + +PF D +H++F +  + +   L+   FC+
Sbjct: 72  GIHHILEVEDVPFTD-MHDIFEKALVQYRDQLEGKTFCV 109


>sp|Q83SG1|THII_SHIFL Thiamine biosynthesis protein thiI OS=Shigella
           flexneri GN=thiI PE=3 SV=2
          Length = 482

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 186 GARHMLEAKCIPFLDPIHEVFREQTILFFSLLQSVRFCI 70
           G  H+LE + +PF D +H++F +  + +   L+   FC+
Sbjct: 72  GIHHILEVEDVPFTD-MHDIFEKALVQYRDQLEGKTFCV 109


>sp|Q0T7G6|THII_SHIF8 Thiamine biosynthesis protein thiI OS=Shigella
           flexneri serotype 5b (strain 8401) GN=thiI PE=3 SV=1
          Length = 482

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 186 GARHMLEAKCIPFLDPIHEVFREQTILFFSLLQSVRFCI 70
           G  H+LE + +PF D +H++F +  + +   L+   FC+
Sbjct: 72  GIHHILEVEDVPFTD-MHDIFEKALVQYRDQLEGKTFCV 109


>sp|Q32JI1|THII_SHIDS Thiamine biosynthesis protein thiI OS=Shigella
           dysenteriae serotype 1 (strain Sd197) GN=thiI PE=3 SV=1
          Length = 482

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 186 GARHMLEAKCIPFLDPIHEVFREQTILFFSLLQSVRFCI 70
           G  H+LE + +PF D +H++F +  + +   L+   FC+
Sbjct: 72  GIHHILEVEDVPFTD-MHDIFEKALVQYRDQLEGKTFCV 109


>sp|Q325H8|THII_SHIBS Thiamine biosynthesis protein thiI OS=Shigella
           boydii serotype 4 (strain Sb227) GN=thiI PE=3 SV=1
          Length = 482

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 186 GARHMLEAKCIPFLDPIHEVFREQTILFFSLLQSVRFCI 70
           G  H+LE + +PF D +H++F +  + +   L+   FC+
Sbjct: 72  GIHHILEVEDVPFTD-MHDIFEKALVQYRDQLEGKTFCV 109


>sp|Q1RFB7|THII_ECOUT Thiamine biosynthesis protein thiI
           OS=Escherichia coli (strain UTI89 / UPEC) GN=thiI PE=3
           SV=1
          Length = 482

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 186 GARHMLEAKCIPFLDPIHEVFREQTILFFSLLQSVRFCI 70
           G  H+LE + +PF D +H++F +  + +   L+   FC+
Sbjct: 72  GIHHILEVEDVPFTD-MHDIFEKALVQYRDQLEGKTFCV 109


>sp|P77718|THII_ECOLI Thiamine biosynthesis protein thiI
           OS=Escherichia coli (strain K12) GN=thiI PE=3 SV=1
          Length = 482

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 186 GARHMLEAKCIPFLDPIHEVFREQTILFFSLLQSVRFCI 70
           G  H+LE + +PF D +H++F +  + +   L+   FC+
Sbjct: 72  GIHHILEVEDVPFTD-MHDIFEKALVQYRDQLEGKTFCV 109


>sp|B1J026|THII_ECOLC Thiamine biosynthesis protein thiI
           OS=Escherichia coli (strain ATCC 8739 / DSM 1576 /
           Crooks) GN=thiI PE=3 SV=1
          Length = 482

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 186 GARHMLEAKCIPFLDPIHEVFREQTILFFSLLQSVRFCI 70
           G  H+LE + +PF D +H++F +  + +   L+   FC+
Sbjct: 72  GIHHILEVEDVPFTD-MHDIFEKALVQYRDQLEGKTFCV 109
tr_hit_id B1VXW5
Definition tr|B1VXW5|B1VXW5_STRGG Putative transposase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350)
Align length 63
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920499|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_G10.
         (487 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1VXW5|B1VXW5_STRGG Putative transposase OS=Streptomyces gris...    34   3.2  
tr|B6JX89|B6JX89_SCHJP Proteasome subunit beta type-7 OS=Schizos...    34   3.2  
tr|A8MW10|A8MW10_HUMAN Putative uncharacterized protein ZNF713 (...    34   4.2  
tr|A6QTS5|A6QTS5_AJECN Predicted protein OS=Ajellomyces capsulat...    33   5.5  

>tr|B1VXW5|B1VXW5_STRGG Putative transposase OS=Streptomyces griseus
           subsp. griseus (strain JCM 4626 / NBRC 13350)
           GN=SGR_1752 PE=4 SV=1
          Length = 93

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
 Frame = -2

Query: 390 ARSCMILGWSREGVCTKLHLVGDCRWCALS--KTP-SIN*YTARINI-QGIES-HYNTAP 226
           +++C  LG SR G+ TK+HL  DCR   LS   TP  +N  TA  ++ +G+ +    T  
Sbjct: 12  SQACQALGRSRGGLTTKVHLAVDCRGLPLSIVLTPGGVNDATAFADVLKGVRTPRAGTGR 71

Query: 225 PRT 217
           PRT
Sbjct: 72  PRT 74


>tr|B6JX89|B6JX89_SCHJP Proteasome subunit beta type-7
           OS=Schizosaccharomyces japonicus yFS275 GN=SJAG_01014
           PE=4 SV=1
          Length = 270

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 11/94 (11%)
 Frame = -2

Query: 468 QNSC*GSR*IYQAKAQTASKAFLGFCARSCMILGWSREGV---------CTKLHLVGDCR 316
           +N+   +R +   KA +     +G  A+ C++LG               C KLH +    
Sbjct: 20  RNAALENRGVPMPKATSTGTTIVGLIAKDCLVLGADTRATAGPTIADKNCEKLHYISPNI 79

Query: 315 WCALSKTPSIN*YTARINIQGIESH--YNTAPPR 220
           WCA + T +   +   +    +E H  Y    PR
Sbjct: 80  WCAGAGTAADTEFVTALTSSNVELHSMYVNRKPR 113


>tr|A8MW10|A8MW10_HUMAN Putative uncharacterized protein ZNF713
           (Fragment) OS=Homo sapiens GN=ZNF713 PE=4 SV=1
          Length = 269

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +2

Query: 302 DNAHHLQSPTR*--SFVHTPSLDQPRIMQLLAQKPKKALEAV*AFAW*IYLLPQQEF*HT 475
           D+ H  + P+    +F HT SL QP+ M L  +KP K  E    F+  I+L+  Q   HT
Sbjct: 105 DHIHTAEKPSECGKAFSHTSSLSQPQ-MLLTGEKPYKCDECGKRFSQRIHLIQHQRI-HT 162

Query: 476 GHAP 487
           G  P
Sbjct: 163 GEKP 166


>tr|A6QTS5|A6QTS5_AJECN Predicted protein OS=Ajellomyces capsulata
           (strain NAm1 / WU24) GN=HCAG_00781 PE=4 SV=1
          Length = 859

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
 Frame = +1

Query: 229 SCIIVTLDSLYIYSC----CISIY*WRFR*RAPPTITHQMKLCTYTLP*-PAKDHAASST 393
           +C++  +  +Y+ +      I ++ W+F    P  + H++  C Y +P   ++D+  S+T
Sbjct: 599 TCLLAAVTKMYLATRNPKGVIQVFQWKF----PFVVFHELPACRYYVPLHESEDNGVSAT 654

Query: 394 EAQESFRGCLSLCLVNLSAPSARILTH 474
             + S RG   +C+   +     IL H
Sbjct: 655 LFRSSRRGDELVCITTWTQSGVPILAH 681