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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920508
Clone id YMU001_000137_H09
Library
Length 117
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000137_H09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGTCCCTTCACCATCTTCTCTCGAGGTATCGACCTCTTGATCTCAACCGTCTTTCCATCC
AGAACATGCTTGTCCTGTAAGACACGCTCACATACAGAAGGATCCGCATAAGTGACA
■■Homology search results ■■ -
sp_hit_id Q99383
Definition sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae
Align length 37
Score (bit) 37.4
E-value 0.024
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920508|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_H09.
         (117 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein ...    37   0.024
sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15...    37   0.040
sp|Q02926|RB97D_DROME Ribonucleoprotein RB97D OS=Drosophila mela...    34   0.20 
sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=M...    33   0.34 
sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=H...    33   0.34 
sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27...    32   0.76 
sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 ...    31   1.7  
sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 ...    30   3.8  
sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rat...    30   4.9  
sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=M...    30   4.9  
sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=H...    30   4.9  
sp|P48810|RB87F_DROME Heterogeneous nuclear ribonucleoprotein 87...    29   6.5  
sp|Q13151|ROA0_HUMAN Heterogeneous nuclear ribonucleoprotein A0 ...    29   8.4  

>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4
           OS=Saccharomyces cerevisiae GN=HRP1 PE=1 SV=1
          Length = 534

 Score = 37.4 bits (85), Expect = 0.024
 Identities = 14/37 (37%), Positives = 27/37 (72%)
 Frame = -2

Query: 116 VTYADPSVCERVLQDKHVLDGKTVEIKRSIPREKMVK 6
           +++  PS  + V++ +H+LDGK ++ KR+IPR++  K
Sbjct: 205 LSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDEQDK 241


>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15
           OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1
          Length = 474

 Score = 36.6 bits (83), Expect = 0.040
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = -2

Query: 116 VTYADPSVCERVLQDKHVLDGKTVEIKRSIPREKMVK 6
           +T+ +P     V+  +H LDGK ++ KR+IPRE+  K
Sbjct: 209 LTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPREEQEK 245


>sp|Q02926|RB97D_DROME Ribonucleoprotein RB97D OS=Drosophila
           melanogaster GN=Rb97D PE=1 SV=1
          Length = 471

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = -2

Query: 116 VTYADPSVCERVLQDK-HVLDGKTVEIKRSIPR 21
           +TY    + +R  +++ H++DGKTVE KR++PR
Sbjct: 78  ITYTKSLMVDRAQENRPHIIDGKTVEAKRALPR 110


>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus
           musculus GN=Msi2 PE=1 SV=1
          Length = 346

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -2

Query: 116 VTYADPSVCERVL-QDKHVLDGKTVEIKRSIPREKMVK 6
           VT+ADP+  ++VL Q  H LD KT++ K + PR    K
Sbjct: 67  VTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPK 104


>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo
           sapiens GN=MSI2 PE=1 SV=1
          Length = 328

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -2

Query: 116 VTYADPSVCERVL-QDKHVLDGKTVEIKRSIPREKMVK 6
           VT+ADP+  ++VL Q  H LD KT++ K + PR    K
Sbjct: 67  VTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPK 104


>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C
           OS=Drosophila melanogaster GN=Hrb27C PE=1 SV=2
          Length = 421

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
 Frame = -2

Query: 116 VTYADPSVCERVLQD-KHVLDGKTVEIKRSIPR--EKMVKG 3
           VT+ADP+    VLQ+  H LDG+T++ K   PR  +K  KG
Sbjct: 53  VTFADPTNVNHVLQNGPHTLDGRTIDPKPCNPRTLQKPKKG 93


>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1
           OS=Caenorhabditis elegans GN=hrp-1 PE=1 SV=1
          Length = 346

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 12/34 (35%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
 Frame = -2

Query: 116 VTYADPSVCERVLQDK-HVLDGKTVEIKRSIPRE 18
           VT++  +  +  ++ + H++DGKTV+ KR++PR+
Sbjct: 69  VTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRD 102


>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1
           OS=Drosophila melanogaster GN=Hrb98DE PE=1 SV=1
          Length = 365

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 11/27 (40%), Positives = 21/27 (77%)
 Frame = -2

Query: 83  VLQDKHVLDGKTVEIKRSIPREKMVKG 3
           VLQ +H L+GK V++K+++P++   +G
Sbjct: 180 VLQKQHQLNGKMVDVKKALPKQNDQQG 206



 Score = 29.6 bits (65), Expect = 4.9
 Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -2

Query: 116 VTYADPSVCERVLQDK-HVLDGKTVEIKRSIPRE 18
           +TY+  S+ +   + + H +DG+ VE KR++PR+
Sbjct: 77  ITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQ 110


>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus
           norvegicus GN=Msi1 PE=2 SV=1
          Length = 362

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 116 VTYADPSVCERVL-QDKHVLDGKTVEIKRSIPREKMVK 6
           VT+ D +  ++VL Q +H LD KT++ K + PR    K
Sbjct: 66  VTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPK 103


>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus
           musculus GN=Msi1 PE=1 SV=1
          Length = 362

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 116 VTYADPSVCERVL-QDKHVLDGKTVEIKRSIPREKMVK 6
           VT+ D +  ++VL Q +H LD KT++ K + PR    K
Sbjct: 66  VTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPK 103
tr_hit_id B8LPT8
Definition tr|B8LPT8|B8LPT8_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 32
Score (bit) 59.7
E-value 7.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920508|Adiantum capillus-veneris mRNA, clone:
YMU001_000137_H09.
         (117 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LPT8|B8LPT8_PICSI Putative uncharacterized protein OS=Picea...    60   7e-08
tr|B6TGB9|B6TGB9_MAIZE Heterogeneous nuclear ribonucleoprotein A...    57   4e-07
tr|B4FHJ8|B4FHJ8_MAIZE Putative uncharacterized protein OS=Zea m...    57   4e-07
tr|B4FEN7|B4FEN7_MAIZE Putative uncharacterized protein OS=Zea m...    57   4e-07
tr|Q6YVH4|Q6YVH4_ORYSJ Putative heterogeneous nuclearribonucleop...    57   5e-07
tr|Q6YVH3|Q6YVH3_ORYSJ Os02g0221500 protein OS=Oryza sativa subs...    57   5e-07
tr|B7ZX91|B7ZX91_MAIZE Putative uncharacterized protein OS=Zea m...    57   5e-07
tr|A9T3G3|A9T3G3_PHYPA Predicted protein (Fragment) OS=Physcomit...    57   5e-07
tr|A9RJQ3|A9RJQ3_PHYPA Predicted protein (Fragment) OS=Physcomit...    57   5e-07
tr|Q5Z655|Q5Z655_ORYSJ cDNA clone:001-024-D07, full insert seque...    57   6e-07
tr|Q0DBG6|Q0DBG6_ORYSJ Os06g0566100 protein (Fragment) OS=Oryza ...    57   6e-07
tr|A9NVM3|A9NVM3_PICSI Putative uncharacterized protein OS=Picea...    57   6e-07
tr|A3BCV5|A3BCV5_ORYSJ Putative uncharacterized protein OS=Oryza...    57   6e-07
tr|A2YE63|A2YE63_ORYSI Putative uncharacterized protein OS=Oryza...    57   6e-07
tr|A9RFC1|A9RFC1_PHYPA Predicted protein (Fragment) OS=Physcomit...    56   8e-07
tr|B8LKC7|B8LKC7_PICSI Putative uncharacterized protein OS=Picea...    54   5e-06
tr|Q9SU99|Q9SU99_ARATH HnRNP-like protein OS=Arabidopsis thalian...    52   1e-05
tr|Q8W569|Q8W569_ARATH AT4g26650/T15N24_100 OS=Arabidopsis thali...    52   1e-05
tr|A5APB9|A5APB9_VITVI Putative uncharacterized protein (Chromos...    51   3e-05
tr|A7NXG9|A7NXG9_VITVI Chromosome chr5 scaffold_2, whole genome ...    51   3e-05
tr|A5BK88|A5BK88_VITVI Putative uncharacterized protein OS=Vitis...    51   3e-05
tr|A7P6S9|A7P6S9_VITVI Chromosome chr9 scaffold_7, whole genome ...    50   4e-05
tr|A5ASX5|A5ASX5_VITVI Putative uncharacterized protein OS=Vitis...    50   4e-05
tr|A7P0F4|A7P0F4_VITVI Chromosome chr19 scaffold_4, whole genome...    50   6e-05
tr|A5C205|A5C205_VITVI Putative uncharacterized protein OS=Vitis...    50   6e-05
tr|Q9FJ56|Q9FJ56_ARATH RNA-binding protein-like OS=Arabidopsis t...    50   7e-05
tr|Q949Z3|Q949Z3_ARATH Putative RNA-binding protein OS=Arabidops...    50   7e-05
tr|Q8L779|Q8L779_ARATH RNA-binding protein-like OS=Arabidopsis t...    50   7e-05
tr|A7Q2X6|A7Q2X6_VITVI Chromosome chr12 scaffold_47, whole genom...    50   7e-05
tr|Q9FM47|Q9FM47_ARATH Similarity to RNA binding protein (Ribonu...    49   1e-04

>tr|B8LPT8|B8LPT8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 411

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 26/32 (81%), Positives = 31/32 (96%)
 Frame = -2

Query: 116 VTYADPSVCERVLQDKHVLDGKTVEIKRSIPR 21
           VTYADPSV ++V+QDKH+LDGKTVEIKR+IPR
Sbjct: 88  VTYADPSVIDKVIQDKHILDGKTVEIKRTIPR 119


>tr|B6TGB9|B6TGB9_MAIZE Heterogeneous nuclear ribonucleoprotein A3
           OS=Zea mays PE=2 SV=1
          Length = 384

 Score = 57.4 bits (137), Expect = 4e-07
 Identities = 22/36 (61%), Positives = 34/36 (94%)
 Frame = -2

Query: 116 VTYADPSVCERVLQDKHVLDGKTVEIKRSIPREKMV 9
           VT++DPSV ++VL+D HV+DG+TVE+KR++PRE+M+
Sbjct: 101 VTFSDPSVIDKVLEDDHVIDGRTVEVKRTVPREEMI 136


>tr|B4FHJ8|B4FHJ8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 384

 Score = 57.4 bits (137), Expect = 4e-07
 Identities = 22/36 (61%), Positives = 34/36 (94%)
 Frame = -2

Query: 116 VTYADPSVCERVLQDKHVLDGKTVEIKRSIPREKMV 9
           VT++DPSV ++VL+D HV+DG+TVE+KR++PRE+M+
Sbjct: 101 VTFSDPSVIDKVLEDDHVIDGRTVEVKRTVPREEMI 136


>tr|B4FEN7|B4FEN7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 227

 Score = 57.4 bits (137), Expect = 4e-07
 Identities = 22/36 (61%), Positives = 34/36 (94%)
 Frame = -2

Query: 116 VTYADPSVCERVLQDKHVLDGKTVEIKRSIPREKMV 9
           VT++DPSV ++VL+D HV+DG+TVE+KR++PRE+M+
Sbjct: 101 VTFSDPSVIDKVLEDDHVIDGRTVEVKRTVPREEMI 136


>tr|Q6YVH4|Q6YVH4_ORYSJ Putative heterogeneous
           nuclearribonucleoprotein A2 OS=Oryza sativa subsp.
           japonica GN=P0758B01.1-2 PE=4 SV=1
          Length = 374

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 22/35 (62%), Positives = 34/35 (97%)
 Frame = -2

Query: 116 VTYADPSVCERVLQDKHVLDGKTVEIKRSIPREKM 12
           VT++DPSV ++VL+D+HV+DG+TVE+KR++PRE+M
Sbjct: 112 VTFSDPSVIDKVLEDEHVIDGRTVEVKRTVPREEM 146


>tr|Q6YVH3|Q6YVH3_ORYSJ Os02g0221500 protein OS=Oryza sativa subsp.
           japonica GN=P0758B01.1-1 PE=4 SV=1
          Length = 397

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 22/35 (62%), Positives = 34/35 (97%)
 Frame = -2

Query: 116 VTYADPSVCERVLQDKHVLDGKTVEIKRSIPREKM 12
           VT++DPSV ++VL+D+HV+DG+TVE+KR++PRE+M
Sbjct: 112 VTFSDPSVIDKVLEDEHVIDGRTVEVKRTVPREEM 146


>tr|B7ZX91|B7ZX91_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 413

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 22/35 (62%), Positives = 34/35 (97%)
 Frame = -2

Query: 116 VTYADPSVCERVLQDKHVLDGKTVEIKRSIPREKM 12
           VT++DPSV +RVL+D+HV+DG+TVE+KR++P+E+M
Sbjct: 146 VTFSDPSVLDRVLEDEHVIDGRTVEVKRTVPKEEM 180


>tr|A9T3G3|A9T3G3_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_139747 PE=4 SV=1
          Length = 199

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 23/35 (65%), Positives = 31/35 (88%)
 Frame = -2

Query: 116 VTYADPSVCERVLQDKHVLDGKTVEIKRSIPREKM 12
           VT+ADP+VC+ V+ DKHV+DG+TVE K+S+PRE M
Sbjct: 47  VTFADPAVCDNVVLDKHVIDGRTVEAKKSVPRENM 81


>tr|A9RJQ3|A9RJQ3_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115456 PE=4 SV=1
          Length = 177

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 23/35 (65%), Positives = 31/35 (88%)
 Frame = -2

Query: 116 VTYADPSVCERVLQDKHVLDGKTVEIKRSIPREKM 12
           VT+ADP+VC+ V+ DKHV+DG+TVE K+S+PRE M
Sbjct: 47  VTFADPAVCDNVVLDKHVIDGRTVEAKKSVPRENM 81


>tr|Q5Z655|Q5Z655_ORYSJ cDNA clone:001-024-D07, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0567G03.6 PE=2 SV=1
          Length = 285

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 22/35 (62%), Positives = 33/35 (94%)
 Frame = -2

Query: 116 VTYADPSVCERVLQDKHVLDGKTVEIKRSIPREKM 12
           VT++DPSV ++VLQD+H +DG+TVE+KR++PRE+M
Sbjct: 15  VTFSDPSVIDKVLQDEHTIDGRTVEVKRTVPREEM 49