BP920518
Clone id YMU001_000138_B02
Library
Length 503
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000138_B02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CAGAGCACTGTTTTGTTAAATTTGGAAAGAGAAGCTCATGTCGAGGATCTGTCGGCTTTA
ATGTTGAACGAACAGGAGTGTTCTTCATTTGATGTTGTCGACCTCAACAAGGATGGCCAA
CCTCAGTCTAGGCAGCATGCTTTGGGTGATGATAAACCTGAGGAGAACCAGTCGGAAAGC
ATTGAAGGCATGTTTGCAAACTTGCCTCGTTTACGTTTCCCATGGATACTGAAGAAGGGG
CGGAAACCTAAAAGTCAGCGCGCAGCTGTGATTGAGTCGTTTCAGTCTCTTCCTTACATA
TCACCGTATAGGAACTCTCGCGAGCTCGTACTCCCTCCACACAAGACCTTGCAAACTGAC
AAGTCTTTGGTGGGTTTGATTCATGAATTCTTGAGTCTTACTTTAGAGAAGAGAGCTACG
GTCCAGCAGTTGGAGCTCTTCCAAAGACCATACCGGCTTCCAAATAACTTGGTGGAATTT
TTACTCAAATATGATGGCATATT
■■Homology search results ■■ -
sp_hit_id A3DN67
Definition sp|A3DN67|SYT_STAMF Threonyl-tRNA synthetase OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1)
Align length 101
Score (bit) 33.1
E-value 0.75
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920518|Adiantum capillus-veneris mRNA, clone:
YMU001_000138_B02.
(503 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A3DN67|SYT_STAMF Threonyl-tRNA synthetase OS=Staphylothermus ... 33 0.75
sp|Q9CP49|Y211_PASMU UPF0276 protein PM0211 OS=Pasteurella multo... 30 4.9
sp|Q8LPR5|TCP4_ARATH Transcription factor TCP4 OS=Arabidopsis th... 30 4.9
sp|Q9JHU2|PALMD_MOUSE Palmdelphin OS=Mus musculus GN=Palmd PE=1 ... 30 4.9
sp|Q6DRJ4|KRI1_DANRE Protein KRI1 homolog OS=Danio rerio GN=kri1... 30 6.4
sp|Q7SYD9|INT6_DANRE Integrator complex subunit 6 OS=Danio rerio... 30 6.4
sp|Q6PCM2|INT6_MOUSE Integrator complex subunit 6 OS=Mus musculu... 30 8.3
sp|Q9UL03|INT6_HUMAN Integrator complex subunit 6 OS=Homo sapien... 30 8.3
sp|Q5U4W6|INT6B_XENLA Integrator complex subunit 6-B OS=Xenopus ... 30 8.3

>sp|A3DN67|SYT_STAMF Threonyl-tRNA synthetase OS=Staphylothermus
marinus (strain ATCC 43588 / DSM 3639 / F1) GN=thrS PE=3
SV=1
Length = 614

Score = 33.1 bits (74), Expect = 0.75
Identities = 27/101 (26%), Positives = 46/101 (45%)
Frame = +1

Query: 151 DKPEENQSESIEGMFANLPRLRFPWILKKGRKPKSQRAAVIESFQSLPYISPYRNSRELV 330
DKPEE +E+ EG F N+ L +++G K AV E + P + ++
Sbjct: 21 DKPEELTNENKEGFFENV--LVVFTSVEEGDNEKVVEKAVTEILDIANRVKP----KTIL 74

Query: 331 LPPHKTLQTDKSLVGLIHEFLSLTLEKRATVQQLELFQRPY 453
L P+ L +D + E + L +K LE+++ P+
Sbjct: 75 LYPYAHLSSDLASPSQALEIMKLLEQKLRGKTDLEVYRAPF 115


>sp|Q9CP49|Y211_PASMU UPF0276 protein PM0211 OS=Pasteurella
multocida GN=PM0211 PE=3 SV=1
Length = 307

Score = 30.4 bits (67), Expect = 4.9
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +1

Query: 157 PEENQSESIEGMFANLPRLRFPWILKKGRKPKSQRAAVIE-SFQSLPYISPYRNSRELVL 333
P + I+G + +LP+L + G KS ++E ++Q LP+I P R+
Sbjct: 220 PSDEAFNKIKGEYRHLPQLL---VDTHGEAVKSNVWDLLEYAYQRLPHIPPTLLERDFNF 276

Query: 334 PPHKTLQTD-KSLVGLIHEFLSLTLEKR 414
PP L + + + L + LT+E R
Sbjct: 277 PPFAELYAEVEHIAQLQQKHAKLTVENR 304


>sp|Q8LPR5|TCP4_ARATH Transcription factor TCP4 OS=Arabidopsis
thaliana GN=TCP4 PE=2 SV=1
Length = 420

Score = 30.4 bits (67), Expect = 4.9
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -2

Query: 238 PSSVSMGNVNEASLQTCLQCFPTGSPQVYHHPKH 137
P +S N L+ LQ FP G P + HH H
Sbjct: 213 PDLLSRTNSQNQDLRLSLQSFPDGPPSLLHHQHH 246


>sp|Q9JHU2|PALMD_MOUSE Palmdelphin OS=Mus musculus GN=Palmd PE=1
SV=1
Length = 551

Score = 30.4 bits (67), Expect = 4.9
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1

Query: 160 EENQSESIEGMFANLPRLRFPWILKKGRKPKSQ 258
EEN ESIE ++AN+P L +I + RK +++
Sbjct: 129 EENPEESIEDIYANIPDLPSSYIPSRLRKERNE 161


>sp|Q6DRJ4|KRI1_DANRE Protein KRI1 homolog OS=Danio rerio GN=kri1
PE=2 SV=1
Length = 765

Score = 30.0 bits (66), Expect = 6.4
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +1

Query: 13 LLNLEREAHVEDLSALM-LNEQECSSFDVVDLNKDGQPQSR----QHALGDDKPEENQSE 177
L NL+R ++ L L L E +F+ VDL+ D PQ Q GD+ EEN+ E
Sbjct: 336 LKNLKRAEIMDKLKKLQELTGNEQLAFNDVDLDGDFDPQQHDQLMQKVFGDEYYEENEEE 395


>sp|Q7SYD9|INT6_DANRE Integrator complex subunit 6 OS=Danio rerio
GN=ints6 PE=2 SV=1
Length = 892

Score = 30.0 bits (66), Expect = 6.4
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +1

Query: 49 LSALMLNEQECSSFDVVDLNKDGQPQSRQHALGDDKPEENQSESIEGMFANLPR 210
L + +N +E + F + LNKD +PQ+ ++A D P N + + M +NL R
Sbjct: 518 LRLIDMNFKEFAGFQIALLNKDLKPQAYRNAY--DIPRRNLLDQVTRMRSNLLR 569


>sp|Q6PCM2|INT6_MOUSE Integrator complex subunit 6 OS=Mus musculus
GN=Ints6 PE=2 SV=1
Length = 883

Score = 29.6 bits (65), Expect = 8.3
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +1

Query: 58 LMLNEQECSSFDVVDLNKDGQPQSRQHALGDDKPEENQSESIEGMFANL 204
L LN +E + F V LNKD +PQ+ ++A D P N + + M +NL
Sbjct: 516 LDLNMKEYTGFQVALLNKDLKPQTFRNAY--DIPRRNLLDHLTRMRSNL 562


>sp|Q9UL03|INT6_HUMAN Integrator complex subunit 6 OS=Homo sapiens
GN=INTS6 PE=1 SV=1
Length = 887

Score = 29.6 bits (65), Expect = 8.3
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +1

Query: 58 LMLNEQECSSFDVVDLNKDGQPQSRQHALGDDKPEENQSESIEGMFANL 204
L LN +E + F V LNKD +PQ+ ++A D P N + + M +NL
Sbjct: 517 LDLNMKEYTGFQVALLNKDLKPQTFRNAY--DIPRRNLLDHLTRMRSNL 563


>sp|Q5U4W6|INT6B_XENLA Integrator complex subunit 6-B OS=Xenopus
laevis GN=ints6-B PE=2 SV=1
Length = 883

Score = 29.6 bits (65), Expect = 8.3
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +1

Query: 64 LNEQECSSFDVVDLNKDGQPQSRQHALGDDKPEENQSESIEGMFANL 204
LN +E + F + LNKD +PQ+ ++A D P N + + M ANL
Sbjct: 519 LNMKEFAGFQIALLNKDIKPQTFRNAY--DIPRTNLLDHLTRMRANL 563


tr_hit_id A7PW14
Definition tr|A7PW14|A7PW14_VITVI Chromosome chr8 scaffold_34, whole genome shotgun sequence OS=Vitis vinifera
Align length 97
Score (bit) 65.9
E-value 1.0e-09
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920518|Adiantum capillus-veneris mRNA, clone:
YMU001_000138_B02.
(503 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7PW14|A7PW14_VITVI Chromosome chr8 scaffold_34, whole genome... 66 1e-09
tr|Q2QY72|Q2QY72_ORYSJ Expressed protein OS=Oryza sativa subsp. ... 62 2e-08
tr|Q0IQC7|Q0IQC7_ORYSJ Os12g0130100 protein (Fragment) OS=Oryza ... 62 2e-08
tr|A3CEM8|A3CEM8_ORYSJ Putative uncharacterized protein OS=Oryza... 62 2e-08
tr|A2ZHS7|A2ZHS7_ORYSI Putative uncharacterized protein OS=Oryza... 62 2e-08
tr|Q5ZDJ1|Q5ZDJ1_ORYSJ Amino acid transporter-like OS=Oryza sati... 61 3e-08
tr|Q5XVF2|Q5XVF2_ARATH Putative uncharacterized protein OS=Arabi... 61 3e-08
tr|Q0JL81|Q0JL81_ORYSJ Os01g0617600 protein OS=Oryza sativa subs... 61 3e-08
tr|O64539|O64539_ARATH YUP8H12R.26 protein (Putative uncharacter... 61 3e-08
tr|A2ZVF3|A2ZVF3_ORYSJ Putative uncharacterized protein OS=Oryza... 61 3e-08
tr|A2WSN0|A2WSN0_ORYSI Putative uncharacterized protein OS=Oryza... 61 3e-08
tr|A6MD09|A6MD09_9ORYZ Putative uncharacterized protein OS=Oryza... 61 3e-08
tr|Q9SJW7|Q9SJW7_ARATH Putative uncharacterized protein At2g3129... 60 4e-08
tr|Q570M8|Q570M8_ARATH Putative uncharacterized protein At2g3129... 60 4e-08
tr|A7Q7C7|A7Q7C7_VITVI Chromosome chr18 scaffold_59, whole genom... 60 8e-08
tr|A5C261|A5C261_VITVI Putative uncharacterized protein OS=Vitis... 60 8e-08
tr|Q75HB0|Q75HB0_ORYSJ Expressed protein (Putative uncharacteriz... 59 1e-07
tr|Q2A9E6|Q2A9E6_BRAOL Putative uncharacterized protein OS=Brass... 59 1e-07
tr|Q0DPS2|Q0DPS2_ORYSJ Os03g0667400 protein (Fragment) OS=Oryza ... 59 1e-07
tr|A2XKF0|A2XKF0_ORYSI Putative uncharacterized protein OS=Oryza... 59 1e-07
tr|Q9C590|Q9C590_ARATH Putative uncharacterized protein At5g2197... 57 4e-07
tr|Q6K4X2|Q6K4X2_ORYSJ Tyrosine-specific protein phosphatase-lik... 57 6e-07
tr|Q0E1B9|Q0E1B9_ORYSJ Os02g0464400 protein OS=Oryza sativa subs... 57 6e-07
tr|B8AHI0|B8AHI0_ORYSI Putative uncharacterized protein OS=Oryza... 57 6e-07
tr|A3A6M2|A3A6M2_ORYSJ Putative uncharacterized protein OS=Oryza... 57 6e-07
tr|Q2RAY8|Q2RAY8_ORYSJ D-mannose binding lectin family protein, ... 56 8e-07
tr|Q0IUV4|Q0IUV4_ORYSJ Os11g0132900 protein OS=Oryza sativa subs... 56 8e-07
tr|A2ZB34|A2ZB34_ORYSI Putative uncharacterized protein OS=Oryza... 56 8e-07
tr|A7QVY8|A7QVY8_VITVI Chromosome chr2 scaffold_196, whole genom... 55 1e-06
tr|A2XD81|A2XD81_ORYSI Putative uncharacterized protein OS=Oryza... 55 2e-06

>tr|A7PW14|A7PW14_VITVI Chromosome chr8 scaffold_34, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00025434001
PE=4 SV=1
Length = 425

Score = 65.9 bits (159), Expect = 1e-09
Identities = 36/97 (37%), Positives = 53/97 (54%)
Frame = +1

Query: 211 LRFPWILKKGRKPKSQRAAVIESFQSLPYISPYRNSRELVLPPHKTLQTDKSLVGLIHEF 390
L FP +G + + A +E FQ LPYISPY +SR ++ P+ L +K +VG++HEF
Sbjct: 233 LAFPMSFPRGYGAQKKVKAWMEEFQKLPYISPYEDSR--LIDPNSELM-EKRVVGVLHEF 289

Query: 391 LSLTLEKRATVQQLELFQRPYRLPNNLVEFLLKYDGI 501
LSLT+ K+ L + LP+ +Y GI
Sbjct: 290 LSLTIHKKTKRNYLRSLREELNLPHKFTRIFTRYPGI 326


>tr|Q2QY72|Q2QY72_ORYSJ Expressed protein OS=Oryza sativa subsp.
japonica GN=LOC_Os12g03630 PE=4 SV=1
Length = 546

Score = 62.0 bits (149), Expect = 2e-08
Identities = 34/95 (35%), Positives = 53/95 (55%)
Frame = +1

Query: 217 FPWILKKGRKPKSQRAAVIESFQSLPYISPYRNSRELVLPPHKTLQTDKSLVGLIHEFLS 396
FP G K + + ++Q LPY Y N+ + P H Q +K +VG++HE LS
Sbjct: 272 FPINFPTGFKIEKGFREKLGNWQRLPYTKAYENNE--LHPIHNVEQLEKHIVGILHELLS 329

Query: 397 LTLEKRATVQQLELFQRPYRLPNNLVEFLLKYDGI 501
LT+EK +++ F+RP+ + NL E +LK+ GI
Sbjct: 330 LTVEKMIPLERFSHFRRPFDMEVNLRELILKHPGI 364


>tr|Q0IQC7|Q0IQC7_ORYSJ Os12g0130100 protein (Fragment) OS=Oryza
sativa subsp. japonica GN=Os12g0130100 PE=4 SV=1
Length = 216

Score = 62.0 bits (149), Expect = 2e-08
Identities = 34/95 (35%), Positives = 53/95 (55%)
Frame = +1

Query: 217 FPWILKKGRKPKSQRAAVIESFQSLPYISPYRNSRELVLPPHKTLQTDKSLVGLIHEFLS 396
FP G K + + ++Q LPY Y N+ + P H Q +K +VG++HE LS
Sbjct: 56 FPINFPTGFKIEKGFREKLGNWQRLPYTKAYENNE--LHPIHNVEQLEKHIVGILHELLS 113

Query: 397 LTLEKRATVQQLELFQRPYRLPNNLVEFLLKYDGI 501
LT+EK +++ F+RP+ + NL E +LK+ GI
Sbjct: 114 LTVEKMIPLERFSHFRRPFDMEVNLRELILKHPGI 148


>tr|A3CEM8|A3CEM8_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_033750 PE=4 SV=1
Length = 432

Score = 62.0 bits (149), Expect = 2e-08
Identities = 34/95 (35%), Positives = 53/95 (55%)
Frame = +1

Query: 217 FPWILKKGRKPKSQRAAVIESFQSLPYISPYRNSRELVLPPHKTLQTDKSLVGLIHEFLS 396
FP G K + + ++Q LPY Y N+ + P H Q +K +VG++HE LS
Sbjct: 272 FPINFPTGFKIEKGFREKLGNWQRLPYTKAYENNE--LHPIHNVEQLEKHIVGILHELLS 329

Query: 397 LTLEKRATVQQLELFQRPYRLPNNLVEFLLKYDGI 501
LT+EK +++ F+RP+ + NL E +LK+ GI
Sbjct: 330 LTVEKMIPLERFSHFRRPFDMEVNLRELILKHPGI 364


>tr|A2ZHS7|A2ZHS7_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_37360 PE=4 SV=1
Length = 372

Score = 61.6 bits (148), Expect = 2e-08
Identities = 34/95 (35%), Positives = 53/95 (55%)
Frame = +1

Query: 217 FPWILKKGRKPKSQRAAVIESFQSLPYISPYRNSRELVLPPHKTLQTDKSLVGLIHEFLS 396
FP G K + + ++Q LPY Y N+ + P H Q +K +VG++HE LS
Sbjct: 212 FPINFPTGFKIEKGFREKLGNWQRLPYTKAYENNE--LHPIHNVEQLEKHIVGILHELLS 269

Query: 397 LTLEKRATVQQLELFQRPYRLPNNLVEFLLKYDGI 501
LT+EK +++ F+RP+ + NL E +LK+ GI
Sbjct: 270 LTVEKMIPLERFSHFRRPFDMEVNLRELVLKHPGI 304


>tr|Q5ZDJ1|Q5ZDJ1_ORYSJ Amino acid transporter-like OS=Oryza sativa
subsp. japonica GN=P0686E09.28 PE=4 SV=1
Length = 879

Score = 61.2 bits (147), Expect = 3e-08
Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Frame = +1

Query: 208 RLRFPWILKKGRKPKSQRAAVIESFQSLPYISPYRN-SRELVLPPHKTLQTDKSLVGLIH 384
R FP G K + +Q LPY SPY + S + + +K V +H
Sbjct: 668 RFAFPTRFPPGFKIGKYFRIAVWKWQRLPYASPYADVSGHDLRSLEARRRMEKRAVAAVH 727

Query: 385 EFLSLTLEKRATVQQLELFQRPYRLPNNLVEFLLKYDGI 501
E LSLT+EKR T+++L LF+ +P + EFLLKY GI
Sbjct: 728 ELLSLTVEKRTTLERLALFRDALGVPKKIKEFLLKYQGI 766


>tr|Q5XVF2|Q5XVF2_ARATH Putative uncharacterized protein
OS=Arabidopsis thaliana PE=2 SV=1
Length = 413

Score = 61.2 bits (147), Expect = 3e-08
Identities = 36/100 (36%), Positives = 51/100 (51%)
Frame = +1

Query: 202 LPRLRFPWILKKGRKPKSQRAAVIESFQSLPYISPYRNSRELVLPPHKTLQTDKSLVGLI 381
L R F G +P + E +Q + + SPY N+R K K +V ++
Sbjct: 259 LGRNAFKISFPPGFRPNASYLEEFEKWQKMEFPSPYLNARRFDAADPKAR---KRVVAVL 315

Query: 382 HEFLSLTLEKRATVQQLELFQRPYRLPNNLVEFLLKYDGI 501
HE LSLT+EKR T QL+ F Y LP+ L+ L+K+ GI
Sbjct: 316 HELLSLTMEKRVTCAQLDAFHSEYLLPSRLILCLIKHQGI 355


>tr|Q0JL81|Q0JL81_ORYSJ Os01g0617600 protein OS=Oryza sativa subsp.
japonica GN=Os01g0617600 PE=4 SV=1
Length = 716

Score = 61.2 bits (147), Expect = 3e-08
Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Frame = +1

Query: 208 RLRFPWILKKGRKPKSQRAAVIESFQSLPYISPYRN-SRELVLPPHKTLQTDKSLVGLIH 384
R FP G K + +Q LPY SPY + S + + +K V +H
Sbjct: 505 RFAFPTRFPPGFKIGKYFRIAVWKWQRLPYASPYADVSGHDLRSLEARRRMEKRAVAAVH 564

Query: 385 EFLSLTLEKRATVQQLELFQRPYRLPNNLVEFLLKYDGI 501
E LSLT+EKR T+++L LF+ +P + EFLLKY GI
Sbjct: 565 ELLSLTVEKRTTLERLALFRDALGVPKKIKEFLLKYQGI 603


>tr|O64539|O64539_ARATH YUP8H12R.26 protein (Putative
uncharacterized protein) OS=Arabidopsis thaliana
GN=YUP8H12R.26 PE=2 SV=1
Length = 413

Score = 61.2 bits (147), Expect = 3e-08
Identities = 36/100 (36%), Positives = 51/100 (51%)
Frame = +1

Query: 202 LPRLRFPWILKKGRKPKSQRAAVIESFQSLPYISPYRNSRELVLPPHKTLQTDKSLVGLI 381
L R F G +P + E +Q + + SPY N+R K K +V ++
Sbjct: 259 LGRNAFKISFPPGFRPNASYLEEFEKWQKMEFPSPYLNARRFDAADPKAR---KRVVAVL 315

Query: 382 HEFLSLTLEKRATVQQLELFQRPYRLPNNLVEFLLKYDGI 501
HE LSLT+EKR T QL+ F Y LP+ L+ L+K+ GI
Sbjct: 316 HELLSLTMEKRVTCAQLDAFHSEYLLPSRLILCLIKHQGI 355


>tr|A2ZVF3|A2ZVF3_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_002525 PE=4 SV=1
Length = 410

Score = 61.2 bits (147), Expect = 3e-08
Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Frame = +1

Query: 208 RLRFPWILKKGRKPKSQRAAVIESFQSLPYISPYRN-SRELVLPPHKTLQTDKSLVGLIH 384
R FP G K + +Q LPY SPY + S + + +K V +H
Sbjct: 199 RFAFPTRFPPGFKIGKYFRIAVWKWQRLPYASPYADVSGHDLRSLEARRRMEKRAVAAVH 258

Query: 385 EFLSLTLEKRATVQQLELFQRPYRLPNNLVEFLLKYDGI 501
E LSLT+EKR T+++L LF+ +P + EFLLKY GI
Sbjct: 259 ELLSLTVEKRTTLERLALFRDALGVPKKIKEFLLKYQGI 297