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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920520
Clone id YMU001_000138_B04
Library
Length 341
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000138_B04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TCATGTCAAGCTATTTCCGCAAATGAGCAAAAATGAGGTTCAGCTCTTGTACAACTGGGC
GCAGAAGCAGAACTTGGCCCAAGTGAGATTATATCCTTTTCCCTCATGATTTGACGACTT
TCCTGACAACTAAAACTACGCGGCAGCACCAGTACCCTTTCCTTTCTTCCTTTGAATCTT
CTTCTGATAGAATTCTAATTCTTTTCCTTCAAGAATATAACCATCGGCTCGCCCACATTG
GCCAGGACGAGATGATATGCAAGCGAGAAGGCGTCCACTTGCAATTTGATCCTCCAGATG
AGCATCCAATTTGCGATCCTCATTACGAGCAGATATCTTCC
■■Homology search results ■■ -
sp_hit_id Q93VG5
Definition sp|Q93VG5|RS81_ARATH 40S ribosomal protein S8-1 OS=Arabidopsis thaliana
Align length 57
Score (bit) 101.0
E-value 1.0e-21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920520|Adiantum capillus-veneris mRNA, clone:
YMU001_000138_B04.
         (341 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q93VG5|RS81_ARATH 40S ribosomal protein S8-1 OS=Arabidopsis t...   101   1e-21
sp|P49199|RS8_ORYSJ 40S ribosomal protein S8 OS=Oryza sativa sub...    97   3e-20
sp|Q08069|RS8_MAIZE 40S ribosomal protein S8 OS=Zea mays GN=RPS8...    96   6e-20
sp|Q9FIF3|RS82_ARATH 40S ribosomal protein S8-2 OS=Arabidopsis t...    96   7e-20
sp|O81361|RS8_PRUAR 40S ribosomal protein S8 OS=Prunus armeniaca...    89   7e-18
sp|Q8MLY8|RS8_DROME 40S ribosomal protein S8 OS=Drosophila melan...    82   1e-15
sp|O76756|RS8_APIME 40S ribosomal protein S8 OS=Apis mellifera G...    80   2e-15
sp|Q8WQI5|RS8_SPOFR 40S ribosomal protein S8 OS=Spodoptera frugi...    80   4e-15
sp|P62247|RS8_DANRE 40S ribosomal protein S8 OS=Danio rerio GN=r...    79   5e-15
sp|P62243|RS8_RAT 40S ribosomal protein S8 OS=Rattus norvegicus ...    79   7e-15
sp|P62242|RS8_MOUSE 40S ribosomal protein S8 OS=Mus musculus GN=...    79   7e-15
sp|Q4R6P8|RS8_MACFA 40S ribosomal protein S8 OS=Macaca fascicula...    79   7e-15
sp|P62241|RS8_HUMAN 40S ribosomal protein S8 OS=Homo sapiens GN=...    79   7e-15
sp|Q5E958|RS8_BOVIN 40S ribosomal protein S8 OS=Bos taurus GN=RP...    79   7e-15
sp|Q90YR6|RS8_ICTPU 40S ribosomal protein S8 OS=Ictalurus puncta...    79   9e-15
sp|Q7SYU0|RS8_XENLA 40S ribosomal protein S8 OS=Xenopus laevis G...    77   2e-14
sp|Q54E24|RS8_DICDI 40S ribosomal protein S8 OS=Dictyostelium di...    71   1e-12
sp|Q4N3P0|RS8_THEPA 40S ribosomal protein S8 OS=Theileria parva ...    71   2e-12
sp|Q9P7B2|RS8B_SCHPO 40S ribosomal protein S8-B OS=Schizosacchar...    70   4e-12
sp|O14049|RS8A_SCHPO 40S ribosomal protein S8-A OS=Schizosacchar...    70   4e-12
sp|Q4UFS9|RS8_THEAN 40S ribosomal protein S8 OS=Theileria annula...    69   6e-12
sp|P05754|RS8_YEAST 40S ribosomal protein S8 OS=Saccharomyces ce...    69   9e-12
sp|Q9ZT56|RS8_GRIJA 40S ribosomal protein S8 OS=Griffithsia japo...    64   2e-10
sp|P48156|RS8_CAEEL 40S ribosomal protein S8 OS=Caenorhabditis e...    64   3e-10
sp|P25204|RS8_LEIMA 40S ribosomal protein S8 OS=Leishmania major...    61   2e-09

>sp|Q93VG5|RS81_ARATH 40S ribosomal protein S8-1 OS=Arabidopsis
           thaliana GN=RPS8A PE=2 SV=1
          Length = 222

 Score =  101 bits (252), Expect = 1e-21
 Identities = 47/57 (82%), Positives = 52/57 (91%)
 Frame = -3

Query: 339 KISARNEDRKLDAHLEDQIASGRLLACISSRPGQCGRADGYILEGKELEFYQKKIQR 169
           KI++R E R LD+H+EDQ ASGRLLACISSRPGQCGRADGYILEGKELEFY KKIQ+
Sbjct: 159 KIASRQEGRSLDSHIEDQFASGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQK 215


>sp|P49199|RS8_ORYSJ 40S ribosomal protein S8 OS=Oryza sativa subsp.
           japonica GN=RPS8 PE=2 SV=2
          Length = 220

 Score = 96.7 bits (239), Expect = 3e-20
 Identities = 44/57 (77%), Positives = 49/57 (85%)
 Frame = -3

Query: 339 KISARNEDRKLDAHLEDQIASGRLLACISSRPGQCGRADGYILEGKELEFYQKKIQR 169
           K+  R + R LDAH+E+Q  SGRLLACISSRPGQCGRADGYILEGKELEFY KK+QR
Sbjct: 156 KLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR 212


>sp|Q08069|RS8_MAIZE 40S ribosomal protein S8 OS=Zea mays GN=RPS8
           PE=2 SV=2
          Length = 221

 Score = 95.9 bits (237), Expect = 6e-20
 Identities = 44/57 (77%), Positives = 48/57 (84%)
 Frame = -3

Query: 339 KISARNEDRKLDAHLEDQIASGRLLACISSRPGQCGRADGYILEGKELEFYQKKIQR 169
           K+  R E R LD H+E+Q  SGRLLACISSRPGQCGRADGYILEGKELEFY KK+QR
Sbjct: 157 KLEKRKEGRTLDPHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR 213


>sp|Q9FIF3|RS82_ARATH 40S ribosomal protein S8-2 OS=Arabidopsis
           thaliana GN=RPS8B PE=2 SV=1
          Length = 210

 Score = 95.5 bits (236), Expect = 7e-20
 Identities = 43/57 (75%), Positives = 50/57 (87%)
 Frame = -3

Query: 339 KISARNEDRKLDAHLEDQIASGRLLACISSRPGQCGRADGYILEGKELEFYQKKIQR 169
           K+  R E R LD+HLE+Q +SGRLLACI+SRPGQCGRADGYILEGKELEFY KK+Q+
Sbjct: 145 KLEMRQEGRALDSHLEEQFSSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQK 201


>sp|O81361|RS8_PRUAR 40S ribosomal protein S8 OS=Prunus armeniaca
           GN=RPS8 PE=2 SV=1
          Length = 221

 Score = 89.0 bits (219), Expect = 7e-18
 Identities = 40/57 (70%), Positives = 47/57 (82%)
 Frame = -3

Query: 339 KISARNEDRKLDAHLEDQIASGRLLACISSRPGQCGRADGYILEGKELEFYQKKIQR 169
           K+  R + R LDAH+E+Q   G+LLACISSRPGQCG+ADG ILEGKELEFY KK+QR
Sbjct: 155 KLEKRQQGRTLDAHIEEQFGGGKLLACISSRPGQCGKADGDILEGKELEFYMKKLQR 211


>sp|Q8MLY8|RS8_DROME 40S ribosomal protein S8 OS=Drosophila
           melanogaster GN=RpS8 PE=1 SV=1
          Length = 208

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 39/56 (69%), Positives = 45/56 (80%)
 Frame = -3

Query: 339 KISARNEDRKLDAHLEDQIASGRLLACISSRPGQCGRADGYILEGKELEFYQKKIQ 172
           K   R +  K++  LEDQ  SGR+LACISSRPGQCGR+DGYILEGKELEFY KKI+
Sbjct: 150 KYLERQKYGKVEQALEDQFTSGRILACISSRPGQCGRSDGYILEGKELEFYLKKIK 205


>sp|O76756|RS8_APIME 40S ribosomal protein S8 OS=Apis mellifera
           GN=RpS8 PE=2 SV=2
          Length = 208

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 37/56 (66%), Positives = 45/56 (80%)
 Frame = -3

Query: 339 KISARNEDRKLDAHLEDQIASGRLLACISSRPGQCGRADGYILEGKELEFYQKKIQ 172
           K  AR    K++  LE+Q A+GR+LACISSRPGQCGR DGYILEGKELEFY ++I+
Sbjct: 148 KYKARQRFAKVEPALEEQFATGRVLACISSRPGQCGREDGYILEGKELEFYMRRIK 203


>sp|Q8WQI5|RS8_SPOFR 40S ribosomal protein S8 OS=Spodoptera
           frugiperda GN=RpS8 PE=2 SV=1
          Length = 208

 Score = 79.7 bits (195), Expect = 4e-15
 Identities = 37/56 (66%), Positives = 46/56 (82%)
 Frame = -3

Query: 339 KISARNEDRKLDAHLEDQIASGRLLACISSRPGQCGRADGYILEGKELEFYQKKIQ 172
           K  AR    K+++ LE+Q  +GRLLAC++SRPGQCGRADGYILEGKELEFY +KI+
Sbjct: 148 KYLARQRLSKVESALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIK 203


>sp|P62247|RS8_DANRE 40S ribosomal protein S8 OS=Danio rerio GN=rps8
           PE=2 SV=2
          Length = 208

 Score = 79.3 bits (194), Expect = 5e-15
 Identities = 36/56 (64%), Positives = 44/56 (78%)
 Frame = -3

Query: 339 KISARNEDRKLDAHLEDQIASGRLLACISSRPGQCGRADGYILEGKELEFYQKKIQ 172
           K + R +  K+   LE+Q   G+LLACISSRPGQCGRADGY+LEGKELEFY +KI+
Sbjct: 148 KFTLRRKTAKISPLLEEQFLQGKLLACISSRPGQCGRADGYVLEGKELEFYLRKIK 203


>sp|P62243|RS8_RAT 40S ribosomal protein S8 OS=Rattus norvegicus
           GN=Rps8 PE=1 SV=2
          Length = 208

 Score = 79.0 bits (193), Expect = 7e-15
 Identities = 35/56 (62%), Positives = 45/56 (80%)
 Frame = -3

Query: 339 KISARNEDRKLDAHLEDQIASGRLLACISSRPGQCGRADGYILEGKELEFYQKKIQ 172
           K   R ++ K+ + LE+Q   G+LLACI+SRPGQCGRADGY+LEGKELEFY +KI+
Sbjct: 148 KYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIK 203
tr_hit_id A9T469
Definition tr|A9T469|A9T469_PHYPA Ribosomal protein S8 OS=Physcomitrella patens subsp. patens
Align length 57
Score (bit) 103.0
E-value 6.0e-21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920520|Adiantum capillus-veneris mRNA, clone:
YMU001_000138_B04.
         (341 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9T469|A9T469_PHYPA Ribosomal protein S8 OS=Physcomitrella pa...   103   6e-21
tr|A9TQV8|A9TQV8_PHYPA Ribosomal protein S8 OS=Physcomitrella pa...   101   2e-20
tr|A9TGU7|A9TGU7_PHYPA Ribosomal protein S8 OS=Physcomitrella pa...   101   2e-20
tr|A9TG34|A9TG34_PHYPA Ribosomal protein S8 OS=Physcomitrella pa...   100   3e-20
tr|A9S3Y5|A9S3Y5_PHYPA Ribosomal protein S8 OS=Physcomitrella pa...   100   4e-20
tr|A7R667|A7R667_VITVI Chromosome undetermined scaffold_1176, wh...    98   2e-19
tr|B3TM36|B3TM36_ELAGV 40S ribosomal protein S8 OS=Elaeis guinee...    98   2e-19
tr|Q56ZZ8|Q56ZZ8_ARATH Putative uncharacterized protein At5g2029...    97   3e-19
tr|B4FGG1|B4FGG1_MAIZE Putative uncharacterized protein OS=Zea m...    97   3e-19
tr|Q0E158|Q0E158_ORYSJ Ribosomal protein S8 OS=Oryza sativa subs...    97   5e-19
tr|B8AHZ6|B8AHZ6_ORYSI Putative uncharacterized protein OS=Oryza...    97   5e-19
tr|A6N0S1|A6N0S1_ORYSI 40S ribosomal protein S8 (Fragment) OS=Or...    97   5e-19
tr|A3A6Z9|A3A6Z9_ORYSJ Ribosomal protein S8 OS=Oryza sativa subs...    97   5e-19
tr|A2XS59|A2XS59_ORYSI Ribosomal protein S8 OS=Oryza sativa subs...    97   5e-19
tr|B7FMW0|B7FMW0_MEDTR Putative uncharacterized protein OS=Medic...    96   9e-19
tr|B7FGL5|B7FGL5_MEDTR Putative uncharacterized protein OS=Medic...    96   9e-19
tr|B4FE90|B4FE90_MAIZE 40S ribosomal protein S8 OS=Zea mays PE=2...    96   9e-19
tr|Q7XKS7|Q7XKS7_ORYSA Ribosomal protein S8 OS=Oryza sativa GN=O...    96   1e-18
tr|Q2XPV9|Q2XPV9_SOLTU Ribosomal protein S8 OS=Solanum tuberosum...    96   1e-18
tr|Q0WSK1|Q0WSK1_ARATH Ribosomal protein S8 OS=Arabidopsis thali...    96   1e-18
tr|Q0JDZ7|Q0JDZ7_ORYSJ Ribosomal protein S8 OS=Oryza sativa subs...    96   1e-18
tr|B6DMH1|B6DMH1_9LAMI Putative 40S ribosomal protein S8-like pr...    95   2e-18
tr|B8LML6|B8LML6_PICSI Putative uncharacterized protein OS=Picea...    94   3e-18
tr|A9NNT7|A9NNT7_PICSI Ribosomal protein S8 OS=Picea sitchensis ...    94   3e-18
tr|A9NMS2|A9NMS2_PICSI Ribosomal protein S8 OS=Picea sitchensis ...    94   3e-18
tr|Q3HRZ6|Q3HRZ6_SOLTU Ribosomal protein S8 OS=Solanum tuberosum...    94   3e-18
tr|A9P8H4|A9P8H4_POPTR Ribosomal protein S8 OS=Populus trichocar...    94   3e-18
tr|A1YKE4|A1YKE4_BRASY Ribosomal protein S8 OS=Brachypodium sylv...    94   3e-18
tr|A7P0G2|A7P0G2_VITVI Ribosomal protein S8 OS=Vitis vinifera GN...    94   4e-18
tr|A5AUZ0|A5AUZ0_VITVI Ribosomal protein S8 OS=Vitis vinifera GN...    94   4e-18

>tr|A9T469|A9T469_PHYPA Ribosomal protein S8 OS=Physcomitrella
           patens subsp. patens GN=PHYPADRAFT_191463 PE=3 SV=1
          Length = 216

 Score =  103 bits (256), Expect = 6e-21
 Identities = 49/57 (85%), Positives = 53/57 (92%)
 Frame = -3

Query: 339 KISARNEDRKLDAHLEDQIASGRLLACISSRPGQCGRADGYILEGKELEFYQKKIQR 169
           KI+ R E +KLDAHLEDQ ASGRLLACISSRPGQCGR+DGYILEGKELEFYQKKIQ+
Sbjct: 152 KIAKRAEGQKLDAHLEDQFASGRLLACISSRPGQCGRSDGYILEGKELEFYQKKIQK 208


>tr|A9TQV8|A9TQV8_PHYPA Ribosomal protein S8 OS=Physcomitrella
           patens subsp. patens GN=PHYPADRAFT_110504 PE=3 SV=1
          Length = 216

 Score =  101 bits (252), Expect = 2e-20
 Identities = 48/57 (84%), Positives = 53/57 (92%)
 Frame = -3

Query: 339 KISARNEDRKLDAHLEDQIASGRLLACISSRPGQCGRADGYILEGKELEFYQKKIQR 169
           KI+ R E +KLD+HLEDQ ASGRLLACI+SRPGQCGRADGYILEGKELEFYQKKIQ+
Sbjct: 152 KIAKRVEGQKLDSHLEDQFASGRLLACIASRPGQCGRADGYILEGKELEFYQKKIQK 208


>tr|A9TGU7|A9TGU7_PHYPA Ribosomal protein S8 OS=Physcomitrella
           patens subsp. patens GN=PHYPADRAFT_194964 PE=3 SV=1
          Length = 216

 Score =  101 bits (252), Expect = 2e-20
 Identities = 48/57 (84%), Positives = 52/57 (91%)
 Frame = -3

Query: 339 KISARNEDRKLDAHLEDQIASGRLLACISSRPGQCGRADGYILEGKELEFYQKKIQR 169
           KI+ R E +KLDAHLEDQ ASGRLLACI+SRPGQCGR DGYILEGKELEFYQKKIQ+
Sbjct: 152 KIAKRVESQKLDAHLEDQFASGRLLACIASRPGQCGRVDGYILEGKELEFYQKKIQK 208


>tr|A9TG34|A9TG34_PHYPA Ribosomal protein S8 OS=Physcomitrella
           patens subsp. patens GN=PHYPADRAFT_194737 PE=3 SV=1
          Length = 216

 Score =  100 bits (250), Expect = 3e-20
 Identities = 47/57 (82%), Positives = 53/57 (92%)
 Frame = -3

Query: 339 KISARNEDRKLDAHLEDQIASGRLLACISSRPGQCGRADGYILEGKELEFYQKKIQR 169
           K++ R E +KLD+HLEDQ ASGRLLACI+SRPGQCGRADGYILEGKELEFYQKKIQ+
Sbjct: 152 KLAKRLEGQKLDSHLEDQFASGRLLACIASRPGQCGRADGYILEGKELEFYQKKIQK 208


>tr|A9S3Y5|A9S3Y5_PHYPA Ribosomal protein S8 OS=Physcomitrella
           patens subsp. patens GN=PHYPADRAFT_208398 PE=3 SV=1
          Length = 216

 Score =  100 bits (249), Expect = 4e-20
 Identities = 47/57 (82%), Positives = 52/57 (91%)
 Frame = -3

Query: 339 KISARNEDRKLDAHLEDQIASGRLLACISSRPGQCGRADGYILEGKELEFYQKKIQR 169
           K++ R E  KLD+HLEDQ ASGRLLACI+SRPGQCGRADGYILEGKELEFYQKKIQ+
Sbjct: 152 KLAKRVEGHKLDSHLEDQFASGRLLACIASRPGQCGRADGYILEGKELEFYQKKIQK 208


>tr|A7R667|A7R667_VITVI Chromosome undetermined scaffold_1176, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00008002001 PE=4 SV=1
          Length = 110

 Score = 98.2 bits (243), Expect = 2e-19
 Identities = 45/57 (78%), Positives = 50/57 (87%)
 Frame = -3

Query: 339 KISARNEDRKLDAHLEDQIASGRLLACISSRPGQCGRADGYILEGKELEFYQKKIQR 169
           K+  R  DRKLD H+E+Q +SGRLLACISSRPGQCGRADGYILEGKELEFY +KIQR
Sbjct: 44  KLEKRQADRKLDPHIEEQFSSGRLLACISSRPGQCGRADGYILEGKELEFYTRKIQR 100


>tr|B3TM36|B3TM36_ELAGV 40S ribosomal protein S8 OS=Elaeis
           guineensis var. tenera PE=2 SV=1
          Length = 224

 Score = 97.8 bits (242), Expect = 2e-19
 Identities = 45/57 (78%), Positives = 49/57 (85%)
 Frame = -3

Query: 339 KISARNEDRKLDAHLEDQIASGRLLACISSRPGQCGRADGYILEGKELEFYQKKIQR 169
           K+  R + RKLD H+E+Q  SGRLLACISSRPGQCGRADGYILEGKELEFY KKIQR
Sbjct: 158 KLEKRQQGRKLDPHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQR 214


>tr|Q56ZZ8|Q56ZZ8_ARATH Putative uncharacterized protein At5g20290
           (Fragment) OS=Arabidopsis thaliana GN=At5g20290 PE=2
           SV=1
          Length = 61

 Score = 97.4 bits (241), Expect = 3e-19
 Identities = 45/53 (84%), Positives = 48/53 (90%)
 Frame = -3

Query: 327 RNEDRKLDAHLEDQIASGRLLACISSRPGQCGRADGYILEGKELEFYQKKIQR 169
           R E R LD+H+EDQ ASGRLLACISSRPGQCGRADGYILEGKELEFY KKIQ+
Sbjct: 2   RQEGRSLDSHIEDQFASGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQK 54


>tr|B4FGG1|B4FGG1_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 221

 Score = 97.4 bits (241), Expect = 3e-19
 Identities = 44/57 (77%), Positives = 49/57 (85%)
 Frame = -3

Query: 339 KISARNEDRKLDAHLEDQIASGRLLACISSRPGQCGRADGYILEGKELEFYQKKIQR 169
           KI  R +DR LD H+E+Q  SGRLLACIS+RPGQCGRADGYILEGKELEFY KK+QR
Sbjct: 157 KIEKRQQDRALDTHIEEQFGSGRLLACISARPGQCGRADGYILEGKELEFYMKKLQR 213


>tr|Q0E158|Q0E158_ORYSJ Ribosomal protein S8 OS=Oryza sativa subsp.
           japonica GN=Os02g0489400 PE=2 SV=1
          Length = 220

 Score = 96.7 bits (239), Expect = 5e-19
 Identities = 44/57 (77%), Positives = 49/57 (85%)
 Frame = -3

Query: 339 KISARNEDRKLDAHLEDQIASGRLLACISSRPGQCGRADGYILEGKELEFYQKKIQR 169
           K+  R + R LDAH+E+Q  SGRLLACISSRPGQCGRADGYILEGKELEFY KK+QR
Sbjct: 156 KLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR 212