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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920522
Clone id YMU001_000138_B07
Library
Length 505
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000138_B07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGGATACACAGTCAAGGAACTACTCTCGTGCAAATGATCGGAGATTGCACTAAAAAATAC
ACAATCACATACTACACTTGTGCCAATGTCTGAAGACTGGATATACAATAACCAATTAGT
CCTTTTTCAAGCATTGAGACAACCCAGTCTACTTACCATAAGGACAACCCGAATTCTGTG
AAGCCTGAACATATTGCTCCGCTCCACCTTTCTTCAAATCAGTGGTACGTTCAAAAGATG
TTCCAGTTATTAAACTTGCTAGGCTCTTTGTTTTCGCAGTTAGGTTTTGCAGGCATGACT
CAGAGATGTTGTGTTCTGCCTGTTCCAGCAGCACTCGGTCATCTGAACATATCATTTCCC
TACTAGGACTTGCTCTCAGGTTTCCTTGCACCAAAGCTTGTTGCTCAAAGATATTACTCG
ATTCAGACACAGAGTCGAACTCAAAGTTGCTACTGTTTTGAGATGTGGATCTGCTGTCAA
CATCGCACATGCGTGCTTTCCAAAA
■■Homology search results ■■ -
sp_hit_id P62870
Definition sp|P62870|ELOB_RAT Transcription elongation factor B polypeptide 2 OS=Rattus norvegicus
Align length 37
Score (bit) 32.0
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920522|Adiantum capillus-veneris mRNA, clone:
YMU001_000138_B07.
         (505 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P62870|ELOB_RAT Transcription elongation factor B polypeptide...    32   1.7  
sp|P62869|ELOB_MOUSE Transcription elongation factor B polypepti...    32   1.7  
sp|Q15370|ELOB_HUMAN Transcription elongation factor B polypepti...    32   1.7  
sp|O43506|ADA20_HUMAN ADAM 20 OS=Homo sapiens GN=ADAM20 PE=2 SV=2      32   2.2  
sp|Q6CPW2|MGMT_KLULA Methylated-DNA--protein-cysteine methyltran...    31   3.8  
sp|Q6UXL0|I20RB_HUMAN Interleukin-20 receptor beta chain OS=Homo...    31   3.8  
sp|Q9Z8U7|RUVX_CHLPN Putative Holliday junction resolvase OS=Chl...    30   4.9  
sp|Q09255|YQB1_CAEEL Uncharacterized protein C30G12.1 OS=Caenorh...    30   6.5  
sp|P44733|RMUC_HAEIN DNA recombination protein rmuC homolog OS=H...    30   6.5  
sp|A6LA55|DNLJ_PARD8 DNA ligase OS=Parabacteroides distasonis (s...    30   8.4  

>sp|P62870|ELOB_RAT Transcription elongation factor B polypeptide 2
           OS=Rattus norvegicus GN=Tceb2 PE=1 SV=1
          Length = 118

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 439 FDSVSESSNIFEQQALVQGNLRASPSREMICSDDRVL 329
           F    ESS +FE + +V+G L+  P  + +  DD++L
Sbjct: 15  FTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLL 51


>sp|P62869|ELOB_MOUSE Transcription elongation factor B polypeptide
           2 OS=Mus musculus GN=Tceb2 PE=1 SV=1
          Length = 118

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 439 FDSVSESSNIFEQQALVQGNLRASPSREMICSDDRVL 329
           F    ESS +FE + +V+G L+  P  + +  DD++L
Sbjct: 15  FTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLL 51


>sp|Q15370|ELOB_HUMAN Transcription elongation factor B polypeptide
           2 OS=Homo sapiens GN=TCEB2 PE=1 SV=1
          Length = 118

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 439 FDSVSESSNIFEQQALVQGNLRASPSREMICSDDRVL 329
           F    ESS +FE + +V+G L+  P  + +  DD++L
Sbjct: 15  FTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLL 51


>sp|O43506|ADA20_HUMAN ADAM 20 OS=Homo sapiens GN=ADAM20 PE=2 SV=2
          Length = 726

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = +2

Query: 329 QHSVI*TYHFPTRTCSQVSLHQSLLLKDITRFRHRVEL---KVATVLRCGSAVNIAHACF 499
           +HS +  +H    TC     H  + + DI   +        K+    +C S V+++ AC 
Sbjct: 577 EHSTVQQFHLNDTTCWGTDYHLGMAIPDIGEVKDGTVCGPEKICIRKKCASMVHLSQACQ 636

Query: 500 PK 505
           PK
Sbjct: 637 PK 638


>sp|Q6CPW2|MGMT_KLULA Methylated-DNA--protein-cysteine
           methyltransferase OS=Kluyveromyces lactis GN=MGT1 PE=3
           SV=1
          Length = 189

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 5/105 (4%)
 Frame = -1

Query: 388 QGNLRASPSREMICSDDRVLLEQAEHNISESCLQNLTAKTKSLASLITGTSF-----ERT 224
           +G++    ++ ++ SDD   LEQ   +  +     + ++T      + GT F     E T
Sbjct: 58  KGSIYTLKNKSILKSDDVAWLEQLSFDFLQILAGGIDSQTNIKCEYLLGTEFQKKVWETT 117

Query: 223 TDLKKGGAEQYVQASQNSGCPYGK*TGLSQCLKKD*LVIVYPVFR 89
             +K G    Y Q +   G P      +   L K+ + +V P  R
Sbjct: 118 KTIKAGATISYQQLAVLLGNPKAV-RAIGSALAKNNIAVVIPCHR 161


>sp|Q6UXL0|I20RB_HUMAN Interleukin-20 receptor beta chain OS=Homo
           sapiens GN=IL20RB PE=1 SV=1
          Length = 311

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +1

Query: 295 MTQRCCVLPVPAALGHLNISFPY*DLLSGFLAPKLVAQRYYSIQTQSRTQSCYCFEMWI 471
           +T    +LP P  L  L+ +  +  + S  +AP      YYS++ Q   +S Y   +WI
Sbjct: 28  LTDEVAILPAPQNLSVLSTNMKHLLMWSPVIAPGETV--YYSVEYQGEYESLYTSHIWI 84


>sp|Q9Z8U7|RUVX_CHLPN Putative Holliday junction resolvase
           OS=Chlamydia pneumoniae GN=CPn_0237 PE=3 SV=1
          Length = 151

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = -1

Query: 418 SNIFEQQALVQGNLRASPSREMICSDDRVLLEQAEHNISESC---LQNLTAKTKSLASLI 248
           S++ E+ +L+   L+   + E+I  D+R+   QAE  + + C    ++   KT SLA+ +
Sbjct: 77  SSLQEEVSLLAEELKKLSTVEIILWDERLSSVQAERMLKQDCGLSRKDRKGKTDSLAATL 136

Query: 247 TGTSF 233
             TSF
Sbjct: 137 ILTSF 141


>sp|Q09255|YQB1_CAEEL Uncharacterized protein C30G12.1
           OS=Caenorhabditis elegans GN=C30G12.1 PE=2 SV=2
          Length = 469

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 112 PISPFSSIETTQSTYHKDNPNSVK-PEHIAPLHLSSNQWY 228
           P  PF+++ +T S Y   NP S + P  I  +H++SN ++
Sbjct: 429 PHQPFTTLVSTDSRYSAPNPLSHRLPNEICRVHMNSNPFH 468


>sp|P44733|RMUC_HAEIN DNA recombination protein rmuC homolog
           OS=Haemophilus influenzae GN=rmuC PE=3 SV=2
          Length = 450

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
 Frame = -1

Query: 484 DVDSRSTSQNSSNFEFDSVSESSNIFEQQALVQGNLRASPSREMICSDDRVLLEQAEHNI 305
           ++   +   N    +FD +S   N FEQQ +            +   D+++      H++
Sbjct: 4   ELSKTTQDYNQLASKFDELSSIKNQFEQQTIKVQTENQGLQYRLTERDEQI------HHL 57

Query: 304 SESCLQNLTAKTKSLASLITGTSFERTTDLKKGGAEQ--YVQASQNSGCPY 158
           ++   QNLT K  +L+  +TG     T   K   A+Q  + Q+ Q  G  +
Sbjct: 58  TQE-RQNLTEKLTALSQELTGLQTTLTEKEKYFSAQQQNFEQSKQQLGVEF 107


>sp|A6LA55|DNLJ_PARD8 DNA ligase OS=Parabacteroides distasonis
           (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=ligA PE=3
           SV=1
          Length = 664

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = -1

Query: 307 ISESCLQNLTAKTKSLASLITGTSFERTTDLKKGGAEQYVQASQNSGCPYGK 152
           +SE  L N + K K L  +I+GT  + + D  K   EQ+    +NSG   GK
Sbjct: 579 VSEEQLANRSEKLKGLTIVISGTFSKHSRDEYKAMIEQH--GGKNSGSVSGK 628
tr_hit_id B4KLU2
Definition tr|B4KLU2|B4KLU2_DROMO GI20675 OS=Drosophila mojavensis
Align length 100
Score (bit) 34.7
E-value 2.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920522|Adiantum capillus-veneris mRNA, clone:
YMU001_000138_B07.
         (505 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4KLU2|B4KLU2_DROMO GI20675 OS=Drosophila mojavensis GN=GI206...    35   2.7  
tr|A0DRS0|A0DRS0_PARTE Chromosome undetermined scaffold_60, whol...    35   2.7  
tr|B3RHE3|B3RHE3_YEAS1 Sphingoid long chain base kinase OS=Sacch...    34   4.6  
tr|A7A1E1|A7A1E1_YEAS7 Sphingoid long chain base (LCB) kinase OS...    34   4.6  
tr|A1KXK7|A1KXK7_CHICK Rho GTPase activating protein N/AflII-2 O...    33   6.0  
tr|Q8XQC3|Q8XQC3_RALSO Probable methyl-accepting chemotaxis tran...    33   7.8  
tr|B4IXY0|B4IXY0_DROGR GH15157 OS=Drosophila grimshawi GN=GH1515...    33   7.8  

>tr|B4KLU2|B4KLU2_DROMO GI20675 OS=Drosophila mojavensis GN=GI20675
           PE=4 SV=1
          Length = 883

 Score = 34.7 bits (78), Expect = 2.7
 Identities = 28/100 (28%), Positives = 47/100 (47%)
 Frame = -1

Query: 469 STSQNSSNFEFDSVSESSNIFEQQALVQGNLRASPSREMICSDDRVLLEQAEHNISESCL 290
           S    SSNF F +  +     +QQ +++    AS SR+    +  V LE   HN+ +   
Sbjct: 361 SMESESSNFHFRNTIDEKMFKKQQRMIKNRQSASMSRKK-KKEYVVSLETRLHNLEK--- 416

Query: 289 QNLTAKTKSLASLITGTSFERTTDLKKGGAEQYVQASQNS 170
           +N T K ++L+      +  +T   +KG   ++V  S NS
Sbjct: 417 ENHTLKGENLSLRNQLVALAKTCKCRKGSVCEFVLHSLNS 456


>tr|A0DRS0|A0DRS0_PARTE Chromosome undetermined scaffold_60, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00019455001 PE=4 SV=1
          Length = 231

 Score = 34.7 bits (78), Expect = 2.7
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
 Frame = -1

Query: 493 RMCDVDS-RSTSQNSSNFEFDSVSESSNIFEQQALV-QGNLRASPSREMICSDDRVLLEQ 320
           +M  +D+ +S S+N  +  F S ++SS   EQQ L  QGN + S  R    ++ + + + 
Sbjct: 46  KMVPLDNLQSVSENKYSHIFSSFAQSSKHEEQQQLFQQGNYQKSKQRAFSLTEPQTIKKD 105

Query: 319 AEHNISESCLQNLTAKTKSLASLITGTSFERTTDL 215
            ++N S+  L N    T   A ++     ER  +L
Sbjct: 106 HKYNASDGELTNKKIITVHTARVLECIRKERDKEL 140


>tr|B3RHE3|B3RHE3_YEAS1 Sphingoid long chain base kinase
           OS=Saccharomyces cerevisiae (strain RM11-1a)
           GN=SCRG_04211 PE=4 SV=1
          Length = 678

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 21/76 (27%), Positives = 39/76 (51%)
 Frame = -1

Query: 493 RMCDVDSRSTSQNSSNFEFDSVSESSNIFEQQALVQGNLRASPSREMICSDDRVLLEQAE 314
           RM D  SRS+  N S   F S S++++IFE  +L+           + C  D   ++++E
Sbjct: 46  RMADKRSRSSIDNISRTSFQSNSDNNSIFETASLISC---------VTCLSDTDTIDRSE 96

Query: 313 HNISESCLQNLTAKTK 266
            + +++   +L+A  K
Sbjct: 97  TSTTDTSKDDLSANPK 112


>tr|A7A1E1|A7A1E1_YEAS7 Sphingoid long chain base (LCB) kinase
           OS=Saccharomyces cerevisiae (strain YJM789) GN=LCB5 PE=4
           SV=1
          Length = 678

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 21/76 (27%), Positives = 39/76 (51%)
 Frame = -1

Query: 493 RMCDVDSRSTSQNSSNFEFDSVSESSNIFEQQALVQGNLRASPSREMICSDDRVLLEQAE 314
           RM D  SRS+  N S   F S S++++IFE  +L+           + C  D   ++++E
Sbjct: 46  RMADKRSRSSIDNISRTSFQSNSDNNSIFETASLISC---------VTCLSDTDTIDRSE 96

Query: 313 HNISESCLQNLTAKTK 266
            + +++   +L+A  K
Sbjct: 97  TSTTDTSKDDLSANPK 112


>tr|A1KXK7|A1KXK7_CHICK Rho GTPase activating protein N/AflII-2
           OS=Gallus gallus PE=2 SV=1
          Length = 992

 Score = 33.5 bits (75), Expect = 6.0
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
 Frame = -1

Query: 478 DSRSTSQNSSNFEFDSVSESSNIFEQQALVQGNLRAS-----PSREMICSD------DRV 332
           DS+  S N      +S SES+ IFE+  ++    R +      SR  +C +      + +
Sbjct: 505 DSQEISSNEGILPENSSSESAFIFEKPPVLPDECRLTAEEQQDSRLKLCEEANNLTAETL 564

Query: 331 LLEQAEHNISESCLQNLTAKTKSLASLITGTSFERT 224
           L  +   ++S S L NL A TKS  S +T  + + T
Sbjct: 565 LKVKQAFSVSGSNLHNLRADTKSSFSGVTDETLKET 600


>tr|Q8XQC3|Q8XQC3_RALSO Probable methyl-accepting chemotaxis
           transducer transmembrane protein OS=Ralstonia
           solanacearum GN=RSp1363 PE=4 SV=1
          Length = 543

 Score = 33.1 bits (74), Expect = 7.8
 Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
 Frame = -1

Query: 478 DSRSTSQNSSNFEFDSVSESSNIFEQQALVQGNLRASPSREMICSDDRVLLE--QAEHNI 305
           D+RS +  +S  +F ++ ++ N+ E +AL QG++     R  +  D  V  +  + EH++
Sbjct: 120 DARS-AYGASVRKFFALVDADNVQEARALYQGDMSRLQDRYYVLVDKMVDHQAGEMEHDV 178

Query: 304 SESCLQNLTAKTKSLASLITGT 239
           SE+  Q   AK + +   +  T
Sbjct: 179 SEAAAQGANAKIQMIVLAVLAT 200


>tr|B4IXY0|B4IXY0_DROGR GH15157 OS=Drosophila grimshawi GN=GH15157
           PE=4 SV=1
          Length = 177

 Score = 33.1 bits (74), Expect = 7.8
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 1/104 (0%)
 Frame = -1

Query: 478 DSRSTSQNSSNFEFDSVSESSNIFEQQALVQGNLRASPSREMI-CSDDRVLLEQAEHNIS 302
           D+ ST++NSS+   DS +ESS+          N  +S +      S      +    N S
Sbjct: 16  DTDSTTENSSSSATDSTTESSSSSSATDSTTENSSSSATDSTTESSSSSSATDSTTENSS 75

Query: 301 ESCLQNLTAKTKSLASLITGTSFERTTDLKKGGAEQYVQASQNS 170
            S   + T  + S     T  SF   TD      +     S +S
Sbjct: 76  SSATDSTTDSSSSATDSTTDNSFSSATDSSSSATDSTTDNSSSS 119