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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920524
Clone id YMU001_000138_B09
Library
Length 391
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000138_B09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AAATATGGTAAGAACTACCTTACTGGTTGTGTAGATCTCCAACAACAAATACATACATTA
CAGAGGCAGTGACCTAAGATAGCTATCAAGCTTCATTAACTCTTTCCAAAAACGCACCAA
ATAATGAAAGCGGACATCCCTTCCTTGGTGCTAAAATAGGATCCAGCTCGAATATAACAT
TACGCTACATTGGCAGCAGCATTACCAGGTATCAAGCTTCTTTTACTCTTCCCAAAATCG
CACTAAAGAATAAATGCGGGCATCATTTCCTTGGTGTTGAAGCAGGATCCAACTCAAAAC
AACCTTTGACACAATCTGGAACTTCTCCTGCAGTGAGCTGATGTACTGGTATGTTATGAG
AAAACCTTCGCATCTCATTAGGAAGAACCCT
■■Homology search results ■■ -
sp_hit_id Q6CFE7
Definition sp|Q6CFE7|REXO3_YARLI RNA exonuclease 3 OS=Yarrowia lipolytica
Align length 90
Score (bit) 30.0
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920524|Adiantum capillus-veneris mRNA, clone:
YMU001_000138_B09.
         (391 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6CFE7|REXO3_YARLI RNA exonuclease 3 OS=Yarrowia lipolytica G...    30   3.8  
sp|P29994|ITPR1_RAT Inositol 1,4,5-trisphosphate receptor type 1...    30   4.9  
sp|P11881|ITPR1_MOUSE Inositol 1,4,5-trisphosphate receptor type...    30   4.9  
sp|Q14643|ITPR1_HUMAN Inositol 1,4,5-trisphosphate receptor type...    30   4.9  
sp|Q9TU34|ITPR1_BOVIN Inositol 1,4,5-trisphosphate receptor type...    30   4.9  
sp|Q05753|AKRP_ARATH Ankyrin repeat domain-containing protein, c...    29   6.4  
sp|A3MV61|RNZ_PYRCJ Ribonuclease Z OS=Pyrobaculum calidifontis (...    29   8.4  

>sp|Q6CFE7|REXO3_YARLI RNA exonuclease 3 OS=Yarrowia lipolytica
           GN=REX3 PE=3 SV=1
          Length = 757

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
 Frame = +3

Query: 45  TNTYITEAVT*DSYQASLTLSKNAPN-NESGHPFLG--AKIGSSSNITLRYIGSSITRYQ 215
           T+ +IT ++   S Q  +  SK  P   ++G+P      K G  SNI +++      R  
Sbjct: 346 TSGHITSSI---SNQLDMLASKTKPLLAQNGYPVNPDPLKSGLPSNIGIQHCD----RCD 398

Query: 216 ASFTLPKIALKNKCGHHFLGVEAGSNSKQP 305
            +F +PK+     C +H+     G NS  P
Sbjct: 399 KAFDVPKVDNYGSCKYHWARARMGGNSTMP 428


>sp|P29994|ITPR1_RAT Inositol 1,4,5-trisphosphate receptor type 1
           OS=Rattus norvegicus GN=Itpr1 PE=1 SV=2
          Length = 2750

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = -1

Query: 379 NEMRRFSHNIPVHQLTAGEVPDCVKGCFELDPASTPRK*CPHLFFSAILGRVKEA*YLVM 200
           N + RF H    H L A   PD  + C E  P+  P +       S +    ++  Y ++
Sbjct: 300 NSLFRFKHLATGHYLAAEVDPDFEEECLEFQPSVDPDQDASR---SRLRNAQEKMVYSLV 356

Query: 199 LLPM*RNV--IFELDP 158
            +P   ++  IFELDP
Sbjct: 357 SVPEGNDISSIFELDP 372


>sp|P11881|ITPR1_MOUSE Inositol 1,4,5-trisphosphate receptor type 1
           OS=Mus musculus GN=Itpr1 PE=1 SV=1
          Length = 2749

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = -1

Query: 379 NEMRRFSHNIPVHQLTAGEVPDCVKGCFELDPASTPRK*CPHLFFSAILGRVKEA*YLVM 200
           N + RF H    H L A   PD  + C E  P+  P +       S +    ++  Y ++
Sbjct: 300 NSLFRFKHLATGHYLAAEVDPDFEEECLEFQPSVDPDQDASR---SRLRNAQEKMVYSLV 356

Query: 199 LLPM*RNV--IFELDP 158
            +P   ++  IFELDP
Sbjct: 357 SVPEGNDISSIFELDP 372


>sp|Q14643|ITPR1_HUMAN Inositol 1,4,5-trisphosphate receptor type 1
           OS=Homo sapiens GN=ITPR1 PE=1 SV=2
          Length = 2758

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = -1

Query: 379 NEMRRFSHNIPVHQLTAGEVPDCVKGCFELDPASTPRK*CPHLFFSAILGRVKEA*YLVM 200
           N + RF H    H L A   PD  + C E  P+  P +       S +    ++  Y ++
Sbjct: 300 NSLFRFKHLATGHYLAAEVDPDFEEECLEFQPSVDPDQDASR---SRLRNAQEKMVYSLV 356

Query: 199 LLPM*RNV--IFELDP 158
            +P   ++  IFELDP
Sbjct: 357 SVPEGNDISSIFELDP 372


>sp|Q9TU34|ITPR1_BOVIN Inositol 1,4,5-trisphosphate receptor type 1
           OS=Bos taurus GN=ITPR1 PE=1 SV=1
          Length = 2709

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = -1

Query: 379 NEMRRFSHNIPVHQLTAGEVPDCVKGCFELDPASTPRK*CPHLFFSAILGRVKEA*YLVM 200
           N + RF H    H L A   PD  + C E  P+  P +       S +    ++  Y ++
Sbjct: 300 NSLFRFKHLATGHYLAAEVDPDFEEECLEFQPSVDPDQDASR---SRLRNAQEKMVYSLV 356

Query: 199 LLPM*RNV--IFELDP 158
            +P   ++  IFELDP
Sbjct: 357 SVPEGNDISSIFELDP 372


>sp|Q05753|AKRP_ARATH Ankyrin repeat domain-containing protein,
           chloroplastic OS=Arabidopsis thaliana GN=AKRP PE=1 SV=2
          Length = 435

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 112 THQIMKADIPSLVLK*DPARI*HYATLAAALPGIKLLLLF 231
           T+ +++      VL  + A + HYA   A+ P IKLLLL+
Sbjct: 309 TNYLLRESANPFVLDDEGATLMHYAVQTASAPTIKLLLLY 348


>sp|A3MV61|RNZ_PYRCJ Ribonuclease Z OS=Pyrobaculum calidifontis
           (strain JCM 11548 / VA1) GN=rnz PE=3 SV=1
          Length = 287

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +3

Query: 174 ITLRYIGSSITRYQASFTLPKIALKNKCGHHFLGVEAGSNSKQPLTQSGTSPA 332
           + L ++G+     +A   LP I L++  GH  L ++AG  ++  L Q G SPA
Sbjct: 4   LKLVFLGTGGAVPKADRMLPAIYLEDWLGHRVL-LDAGEGAQYRLLQVGVSPA 55
tr_hit_id Q8RYF9
Definition tr|Q8RYF9|Q8RYF9_ORYSJ Heat shock protein-like (Putative uncharacterized protein) (Os01g0923800 protein) OS=Oryza sativa subsp. japonica
Align length 43
Score (bit) 51.2
E-value 3.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920524|Adiantum capillus-veneris mRNA, clone:
YMU001_000138_B09.
         (391 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8RYF9|Q8RYF9_ORYSJ Heat shock protein-like (Putative unchara...    51   3e-05
tr|A2WYI5|A2WYI5_ORYSI Putative uncharacterized protein OS=Oryza...    51   3e-05
tr|Q1EPG9|Q1EPG9_MUSAC Heat shock protein DnaJ N-terminal domain...    50   7e-05
tr|A7QP45|A7QP45_VITVI Chromosome chr1 scaffold_136, whole genom...    49   1e-04
tr|Q9SLA7|Q9SLA7_ARATH At2g25560/F13B15.22 (Putative DnaJ protei...    47   5e-04
tr|A7PHJ3|A7PHJ3_VITVI Chromosome chr17 scaffold_16, whole genom...    46   0.001
tr|A5AWU3|A5AWU3_VITVI Putative uncharacterized protein OS=Vitis...    46   0.001
tr|O04648|O04648_ARATH A_TM021B04.9 protein OS=Arabidopsis thali...    44   0.003
tr|Q7XKR2|Q7XKR2_ORYSJ OSJNBa0053B21.9 protein OS=Oryza sativa s...    44   0.005
tr|Q6K2F0|Q6K2F0_ORYSJ Os02g0510000 protein OS=Oryza sativa subs...    44   0.005
tr|Q0JDP0|Q0JDP0_ORYSJ Os04g0388800 protein (Fragment) OS=Oryza ...    44   0.005
tr|Q01LE1|Q01LE1_ORYSA OSIGBa0096P03.4 protein OS=Oryza sativa G...    44   0.005
tr|A3AT90|A3AT90_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.005
tr|A2XSS7|A2XSS7_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.005
tr|A2X592|A2X592_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.005
tr|A7QX12|A7QX12_VITVI Chromosome chr14 scaffold_211, whole geno...    43   0.009
tr|A7QTV7|A7QTV7_VITVI Chromosome undetermined scaffold_171, who...    43   0.009
tr|A7PHJ4|A7PHJ4_VITVI Chromosome chr17 scaffold_16, whole genom...    43   0.009
tr|A7NW98|A7NW98_VITVI Chromosome chr5 scaffold_2, whole genome ...    43   0.009
tr|A9TAD2|A9TAD2_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.015
tr|Q9FGM2|Q9FGM2_ARATH DnaJ protein-like OS=Arabidopsis thaliana...    41   0.034
tr|Q6NMG4|Q6NMG4_ARATH At5g53150 OS=Arabidopsis thaliana PE=2 SV=1     41   0.034
tr|Q9SQT7|Q9SQT7_ARATH Putative DnaJ protein OS=Arabidopsis thal...    40   0.044
tr|Q9CAW0|Q9CAW0_ARATH Putative uncharacterized protein T9J14.9 ...    40   0.044
tr|Q56ZK6|Q56ZK6_ARATH Putative DnaJ protein OS=Arabidopsis thal...    40   0.044
tr|A8MR58|A8MR58_ARATH Uncharacterized protein At3g04960.1 (At3g...    40   0.044
tr|A8MQS7|A8MQS7_ARATH Uncharacterized protein At3g04960.2 OS=Ar...    40   0.044
tr|B4F8T9|B4F8T9_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.058
tr|A9RBW3|A9RBW3_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.076
tr|A9S6V0|A9S6V0_PHYPA Predicted protein (Fragment) OS=Physcomit...    39   0.099

>tr|Q8RYF9|Q8RYF9_ORYSJ Heat shock protein-like (Putative
           uncharacterized protein) (Os01g0923800 protein) OS=Oryza
           sativa subsp. japonica GN=P0592G05.23 PE=4 SV=1
          Length = 744

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 23/43 (53%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
 Frame = -1

Query: 391 RVLPNE-MRRFSHNIPVHQLTAGEVPDCVKGCFELDPASTPRK 266
           R +P E M RFSH +P H LT  E  +  KGC+ELDP STP++
Sbjct: 691 RTIPKEEMLRFSHQVPFHVLTGEEAKNSPKGCYELDPGSTPKE 733


>tr|A2WYI5|A2WYI5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_04986 PE=4 SV=1
          Length = 744

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 23/43 (53%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
 Frame = -1

Query: 391 RVLPNE-MRRFSHNIPVHQLTAGEVPDCVKGCFELDPASTPRK 266
           R +P E M RFSH +P H LT  E  +  KGC+ELDP STP++
Sbjct: 691 RTIPKEEMLRFSHQVPFHVLTGEEAKNSPKGCYELDPGSTPKE 733


>tr|Q1EPG9|Q1EPG9_MUSAC Heat shock protein DnaJ N-terminal
           domain-containing protein OS=Musa acuminata
           GN=MA4_106O17.46 PE=4 SV=1
          Length = 1015

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 22/37 (59%), Positives = 26/37 (70%)
 Frame = -1

Query: 382 PNEMRRFSHNIPVHQLTAGEVPDCVKGCFELDPASTP 272
           PNE+ RFSHNIP ++LT  E     +GC ELDPAS P
Sbjct: 677 PNEILRFSHNIPSYRLTGTEKESIPRGCLELDPASLP 713


>tr|A7QP45|A7QP45_VITVI Chromosome chr1 scaffold_136, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00002795001
           PE=4 SV=1
          Length = 817

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 22/40 (55%), Positives = 27/40 (67%)
 Frame = -1

Query: 391 RVLPNEMRRFSHNIPVHQLTAGEVPDCVKGCFELDPASTP 272
           R+   EM RFSH++P + LT  E P   KGC ELDPA+TP
Sbjct: 695 RIPREEMFRFSHHVPSYLLTGQEAPSAPKGCRELDPAATP 734


>tr|Q9SLA7|Q9SLA7_ARATH At2g25560/F13B15.22 (Putative DnaJ protein)
           OS=Arabidopsis thaliana GN=At2g25560 PE=2 SV=1
          Length = 656

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 21/40 (52%), Positives = 27/40 (67%)
 Frame = -1

Query: 391 RVLPNEMRRFSHNIPVHQLTAGEVPDCVKGCFELDPASTP 272
           R L +E+ RFSH IP + LT  E P   +GC +LDPA+TP
Sbjct: 606 RFLRDEISRFSHKIPSYLLTGQEAPGAPRGCRQLDPAATP 645


>tr|A7PHJ3|A7PHJ3_VITVI Chromosome chr17 scaffold_16, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00017963001
           PE=4 SV=1
          Length = 679

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
 Frame = -1

Query: 391 RVLPNE-MRRFSHNIPVHQLTAGEVPDCVKGCFELDPASTP 272
           R++P E + RFSH +P + LT  E  +  KGC ELDPA+TP
Sbjct: 610 RMIPREELFRFSHQVPSYLLTGQEAENAPKGCLELDPAATP 650


>tr|A5AWU3|A5AWU3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_001272 PE=4 SV=1
          Length = 951

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
 Frame = -1

Query: 391 RVLPNE-MRRFSHNIPVHQLTAGEVPDCVKGCFELDPASTP 272
           R++P E + RFSH +P + LT  E  +  KGC ELDPA+TP
Sbjct: 817 RMIPREELFRFSHQVPSYLLTGQEAENAPKGCLELDPAATP 857


>tr|O04648|O04648_ARATH A_TM021B04.9 protein OS=Arabidopsis thaliana
           GN=A_TM021B04.9 PE=4 SV=1
          Length = 1609

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 18/42 (42%), Positives = 28/42 (66%)
 Frame = -1

Query: 391 RVLPNEMRRFSHNIPVHQLTAGEVPDCVKGCFELDPASTPRK 266
           ++ P++M RFSH +P  ++T  E      GCFELDPA+ P++
Sbjct: 647 QIPPSQMLRFSHKVPSFKMTGKEREGVPPGCFELDPAALPKE 688


>tr|Q7XKR2|Q7XKR2_ORYSJ OSJNBa0053B21.9 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBa0053B21.9 PE=4 SV=2
          Length = 729

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 20/40 (50%), Positives = 25/40 (62%)
 Frame = -1

Query: 391 RVLPNEMRRFSHNIPVHQLTAGEVPDCVKGCFELDPASTP 272
           R+   E+ RFSH +P   LT  E  +  KGC ELDPA+TP
Sbjct: 670 RIPKEELFRFSHRVPSRLLTGEEGNNAPKGCHELDPAATP 709


>tr|Q6K2F0|Q6K2F0_ORYSJ Os02g0510000 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0052M16.36 PE=4 SV=1
          Length = 734

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 20/40 (50%), Positives = 25/40 (62%)
 Frame = -1

Query: 391 RVLPNEMRRFSHNIPVHQLTAGEVPDCVKGCFELDPASTP 272
           R+   E+ RFSH +P   LT  E  +  KGC ELDPA+TP
Sbjct: 675 RIPKEELFRFSHRVPSRLLTGEEGNNAPKGCHELDPAATP 714