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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920535
Clone id YMU001_000138_C10
Library
Length 432
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000138_C10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGGCAGCTTTTTACTCTCCTGATGCTGCTCTTGCTCAAACATGTCAAATGAATGTGATTC
TGTAGCTCTACTACTTCCATTCAGTTGTGATACGAGAACTACATCTTCAGCCAGCTGATT
TATCTTTGAATCAACCCCAACTTTCTTCTCAACAGAAACACTTTCCAAGGCTGGGTCAAA
CGAGTTTTGCACTCTCACTCCATTACCCAACAAGAGACCTTCCTCAGACAAGATATTAGA
CATTTCATCTGCTGTATTATCCCGCCTATTGATCACCCAGACATATTCCTTTTGCTCATT
TGCATCCTTCTTAGGTTCCGCATCATCAAGTTCACCATCATCATCGCCATCAGAGTTAGT
GTCTTGTTGATGCACAGAATCTGTTGAAGCTGGCTTTCTCTTATCCTTCTTTGAATGTTT
TCTCTTCCCATC
■■Homology search results ■■ -
sp_hit_id Q6ZN66
Definition sp|Q6ZN66|GBP6_HUMAN Guanylate-binding protein 6 OS=Homo sapiens
Align length 38
Score (bit) 33.1
E-value 0.51
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920535|Adiantum capillus-veneris mRNA, clone:
YMU001_000138_C10.
         (432 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6ZN66|GBP6_HUMAN Guanylate-binding protein 6 OS=Homo sapiens...    33   0.51 
sp|Q6ZQ08|CNOT1_MOUSE CCR4-NOT transcription complex subunit 1 O...    32   1.1  
sp|A5YKK6|CNOT1_HUMAN CCR4-NOT transcription complex subunit 1 O...    32   1.1  
sp|Q54X31|GTAY_DICDI Putative GATA zinc finger domain-containing...    31   1.9  
sp|Q5GSG4|SYT_WOLTR Threonyl-tRNA synthetase OS=Wolbachia sp. su...    30   4.3  
sp|Q5R9T9|GBP6_PONAB Guanylate-binding protein 6 OS=Pongo abelii...    30   4.3  
sp|Q9UL16|CCD19_HUMAN Coiled-coil domain-containing protein 19 O...    30   4.3  
sp|P49025|CTRO_MOUSE Citron Rho-interacting kinase OS=Mus muscul...    30   5.6  
sp|A0JP85|CNOT1_XENTR CCR4-NOT transcription complex subunit 1 O...    30   5.6  
sp|O14578|CTRO_HUMAN Citron Rho-interacting kinase OS=Homo sapie...    29   7.3  
sp|Q9GLX8|BKRB2_PIG B2 bradykinin receptor OS=Sus scrofa GN=BDKR...    29   7.3  
sp|P32299|BKRB2_MOUSE B2 bradykinin receptor OS=Mus musculus GN=...    29   7.3  
sp|A7Z7C8|MURI_BACA2 Glutamate racemase OS=Bacillus amyloliquefa...    29   9.6  
sp|Q6BV06|BUR1_DEBHA Serine/threonine-protein kinase BUR1 OS=Deb...    29   9.6  

>sp|Q6ZN66|GBP6_HUMAN Guanylate-binding protein 6 OS=Homo sapiens
           GN=GBP6 PE=2 SV=1
          Length = 633

 Score = 33.1 bits (74), Expect = 0.51
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 306 DANEQKEYVWVINRRDNTADEMSNILSEEGLLLGNGVR 193
           D  +  +  W+    DN ADE++ ILS    L+G+GV+
Sbjct: 583 DTTKNDDTPWIARTLDNLADELTAILSAPAKLIGHGVK 620


>sp|Q6ZQ08|CNOT1_MOUSE CCR4-NOT transcription complex subunit 1 OS=Mus
            musculus GN=Cnot1 PE=1 SV=2
          Length = 2375

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = -1

Query: 306  DANEQKEYVWVINRRDNTADEMSNILSEEGLLLGNGVRVQNSFDPALESVSVEKKVGVDS 127
            D+ E +  +   +   N    M+ I   E LL+     ++NSF  AL + S +++  +D 
Sbjct: 1430 DSEESRMRIAAHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQ 1489

Query: 126  KINQLAED 103
               QLA+D
Sbjct: 1490 AAAQLAQD 1497


>sp|A5YKK6|CNOT1_HUMAN CCR4-NOT transcription complex subunit 1
            OS=Homo sapiens GN=CNOT1 PE=1 SV=2
          Length = 2376

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = -1

Query: 306  DANEQKEYVWVINRRDNTADEMSNILSEEGLLLGNGVRVQNSFDPALESVSVEKKVGVDS 127
            D+ E +  +   +   N    M+ I   E LL+     ++NSF  AL + S +++  +D 
Sbjct: 1431 DSEESRMRIAAHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQ 1490

Query: 126  KINQLAED 103
               QLA+D
Sbjct: 1491 AAAQLAQD 1498


>sp|Q54X31|GTAY_DICDI Putative GATA zinc finger domain-containing
           protein 25 OS=Dictyostelium discoideum GN=gtaY PE=4 SV=1
          Length = 298

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 24/112 (21%), Positives = 56/112 (50%), Gaps = 12/112 (10%)
 Frame = -1

Query: 309 KDANEQKEYVWVINRRDNTADEMSNILSEEGLLLGNGVRVQNSFDPALESV----SVEKK 142
           K+ N Q+    ++N+R+N   E+ N ++++    GNG     +++  ++S+     +E+K
Sbjct: 8   KNDNYQESIQRIVNQRNNLLKEIENKINQQ---FGNG-----NYETLIKSIELIYEIEEK 59

Query: 141 VGVDSKINQLAEDVV--------LVSQLNGSSRATESHSFDMFEQEQHQESK 10
           +    ++N L  D++        +V     SS    + + ++ +Q+QH + K
Sbjct: 60  IKRIKELNSLQCDLLEYINPTNSMVPTSPFSSPNFPNSNIEIIDQKQHHQQK 111


>sp|Q5GSG4|SYT_WOLTR Threonyl-tRNA synthetase OS=Wolbachia sp.
           subsp. Brugia malayi (strain TRS) GN=thrS PE=3 SV=1
          Length = 632

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
 Frame = -1

Query: 276 VINRRDNTADEMSNILSEEGLLLGNGVRVQNSFDPALESVSVEKKVGVDSKI-------- 121
           V N  DN A E+SN+L E+      GVRV+   D   E VS + ++   +K+        
Sbjct: 545 VTNEADNYATEISNVLKEQ------GVRVKT--DLTNEKVSYKIRLHSSNKVPILWIVGK 596

Query: 120 NQLAEDVVLVSQLNGSSRATES 55
           N++A   V V  L    + + S
Sbjct: 597 NEVASKTVSVRNLGSEKQESSS 618


>sp|Q5R9T9|GBP6_PONAB Guanylate-binding protein 6 OS=Pongo abelii
           GN=GBP6 PE=2 SV=1
          Length = 633

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 306 DANEQKEYVWVINRRDNTADEMSNILSEEGLLLGNGVR 193
           D  +  +  W+    D  ADE++ +LS    L+G+GV+
Sbjct: 583 DITKNDDTPWIARTLDKLADELTAVLSAPAKLIGHGVK 620


>sp|Q9UL16|CCD19_HUMAN Coiled-coil domain-containing protein 19
           OS=Homo sapiens GN=CCDC19 PE=1 SV=1
          Length = 386

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 21/100 (21%), Positives = 46/100 (46%)
 Frame = -1

Query: 312 KKDANEQKEYVWVINRRDNTADEMSNILSEEGLLLGNGVRVQNSFDPALESVSVEKKVGV 133
           +K   +QKE VW  N++ +  +E++   ++  L   N +R++       E +    K+ +
Sbjct: 7   RKKIMKQKEMVWNNNKKLSDLEEVAKERAQNLLQRANKLRMEQE-----EELKDMSKIIL 61

Query: 132 DSKINQLAEDVVLVSQLNGSSRATESHSFDMFEQEQHQES 13
           ++K + + +  +L  Q       TE    D   + + Q+S
Sbjct: 62  NAKCHAIRDAQILEKQQIQKELDTEEKRLDQMMEVERQKS 101


>sp|P49025|CTRO_MOUSE Citron Rho-interacting kinase OS=Mus musculus
            GN=Cit PE=1 SV=3
          Length = 2055

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 25/101 (24%), Positives = 52/101 (51%)
 Frame = -1

Query: 312  KKDANEQKEYVWVINRRDNTADEMSNILSEEGLLLGNGVRVQNSFDPALESVSVEKKVGV 133
            KKD  +++    ++ R +  A E   ILSE+  ++       N+ D  +   S+E+++  
Sbjct: 774  KKDLADKESLENMMQRHEEEAHEKGKILSEQKAMI-------NAMDSKIR--SLEQRIVE 824

Query: 132  DSKINQLAEDVVLVSQLNGSSRATESHSFDMFEQEQHQESK 10
             S+ N+LA +  L +Q N   +A E    ++ +Q+ + E++
Sbjct: 825  LSEANKLAANSSLFTQRN--MKAQEEMISELRQQKFYLETQ 863


>sp|A0JP85|CNOT1_XENTR CCR4-NOT transcription complex subunit 1
            OS=Xenopus tropicalis GN=cnot1 PE=2 SV=1
          Length = 2388

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = -1

Query: 306  DANEQKEYVWVINRRDNTADEMSNILSEEGLLLGNGVRVQNSFDPALESVSVEKKVGVDS 127
            D+ E +  +   +   N    M+ I   E LL+     ++NSF  A+ + S +++  ++ 
Sbjct: 1442 DSEESRMRIAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATAMRAASPQQREMMEQ 1501

Query: 126  KINQLAED 103
               QLA+D
Sbjct: 1502 AAAQLAQD 1509


>sp|O14578|CTRO_HUMAN Citron Rho-interacting kinase OS=Homo sapiens
            GN=CIT PE=1 SV=2
          Length = 2027

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 25/101 (24%), Positives = 52/101 (51%)
 Frame = -1

Query: 312  KKDANEQKEYVWVINRRDNTADEMSNILSEEGLLLGNGVRVQNSFDPALESVSVEKKVGV 133
            KKD  +++    ++ R +  A E   ILSE+  ++       N+ D  +   S+E+++  
Sbjct: 733  KKDLADKETLENMMQRHEEEAHEKGKILSEQKAMI-------NAMDSKIR--SLEQRIVE 783

Query: 132  DSKINQLAEDVVLVSQLNGSSRATESHSFDMFEQEQHQESK 10
             S+ N+LA +  L +Q N   +A E    ++ +Q+ + E++
Sbjct: 784  LSEANKLAANSSLFTQRN--MKAQEEMISELRQQKFYLETQ 822
tr_hit_id A2EYA1
Definition tr|A2EYA1|A2EYA1_TRIVA Viral A-type inclusion protein, putative OS=Trichomonas vaginalis G3
Align length 136
Score (bit) 36.6
E-value 0.64
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920535|Adiantum capillus-veneris mRNA, clone:
YMU001_000138_C10.
         (432 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A2EYA1|A2EYA1_TRIVA Viral A-type inclusion protein, putative ...    37   0.64 
tr|Q7RJS0|Q7RJS0_PLAYO DNA-directed RNA polymerase OS=Plasmodium...    36   1.1  
tr|Q252K3|Q252K3_CHLFF Putative uncharacterized protein pCF08 OS...    35   2.4  
tr|A0DZA6|A0DZA6_PARTE Chromosome undetermined scaffold_7, whole...    34   3.2  
tr|Q4L8T6|Q4L8T6_STAHJ Similar to unknown protein OS=Staphylococ...    33   5.4  
tr|Q32LN4|Q32LN4_BOVIN Coiled-coil domain containing 19 OS=Bos t...    33   5.4  
tr|B4E1U2|B4E1U2_HUMAN cDNA FLJ53421, highly similar to Homo sap...    33   7.1  
tr|B4DRX0|B4DRX0_HUMAN cDNA FLJ59401, highly similar to Homo sap...    33   7.1  
tr|B0AZP3|B0AZP3_HUMAN cDNA, FLJ79483, highly similar to Homo sa...    33   7.1  
tr|A8K2N8|A8K2N8_HUMAN cDNA FLJ77935, highly similar to Homo sap...    33   7.1  
tr|B3PMR7|B3PMR7_MYCA5 Massive surface protein MspF OS=Mycoplasm...    33   9.3  
tr|B1WTE9|B1WTE9_CYAA5 Methyl accepting chemotaxis protein OS=Cy...    33   9.3  

>tr|A2EYA1|A2EYA1_TRIVA Viral A-type inclusion protein, putative
           OS=Trichomonas vaginalis G3 GN=TVAG_030630 PE=4 SV=1
          Length = 1662

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 26/136 (19%), Positives = 60/136 (44%), Gaps = 12/136 (8%)
 Frame = -1

Query: 375 VHQQDTNSXXXXXXXXXDAEPKKDANEQKEYVWVINRRDNTADEMSNILSEEGLLLGNGV 196
           ++++ +N           +E KK+  E +E +W  N  ++  +E+SN+  E   L  N  
Sbjct: 480 INEEKSNDDEINKLKQEISELKKENEELQENLWNENENEDNQEEISNLKKENEKLKQNIK 539

Query: 195 RVQNSFDPALESVSVEKKVGVDSKINQLAEDVVLVSQLNGSSRATESHSFDMFEQ----- 31
            +Q   +   E++  E +  +  K+ +L  +V    +L   +   +  + ++ ++     
Sbjct: 540 ELQKQIETNEENLWNENENDLKQKVTELESEVKNSDKLKEENNKLKKENEELKKEIDDLT 599

Query: 30  -------EQHQESKKL 4
                  E +QE++KL
Sbjct: 600 ENVWKDDEDNQETEKL 615


>tr|Q7RJS0|Q7RJS0_PLAYO DNA-directed RNA polymerase OS=Plasmodium
            yoelii yoelii GN=PY03187 PE=3 SV=1
          Length = 2312

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
 Frame = -1

Query: 261  DNTADEMSNILSEEGLLLGN--GVRVQNSFDPALESVSVEKKVGVDSKINQLAEDVVLVS 88
            D+ AD   +  +E   L+GN  G  V+NS+D  L S+ +   V +  K+N+  + +V++ 
Sbjct: 1235 DDDADYFFSGKNENNDLIGNKFGSLVRNSYDDKLNSMGINP-VEIVQKVNKFLDKLVIIK 1293

Query: 87   QLNGS 73
            Q+N S
Sbjct: 1294 QINNS 1298


>tr|Q252K3|Q252K3_CHLFF Putative uncharacterized protein pCF08
           OS=Chlamydophila felis (strain Fe/C-56) GN=pCF08 PE=4
           SV=1
          Length = 246

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
 Frame = -1

Query: 279 WVINRRDNTADEMSNILSE-EGLLLGNGVRVQNSFDPALESVSVEKKVGVDSKINQLAED 103
           +++  R  +  E   IL + EG+   + + + N F P+L S    K VG + K  +L+E 
Sbjct: 151 YLLASRKGSVKEKVRILGKIEGMSNSSAIDILNKFLPSLRSSQAGKLVGFEEKNKELSEK 210

Query: 102 VVLVSQLNGSSRATESHSFDMFEQ 31
           ++ + ++  S      H+ ++ +Q
Sbjct: 211 LIEILKIVCSDLELSEHNRNLLQQ 234


>tr|A0DZA6|A0DZA6_PARTE Chromosome undetermined scaffold_7, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00003342001 PE=4 SV=1
          Length = 420

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
 Frame = -1

Query: 246 EMSNILSEEGLLLGNGVRVQNSFDPALE------SVSVEKKVGVDSKINQLAEDVVLVSQ 85
           ++ +   +E LLL    ++Q SFDP  +       +S +K   +  +I+Q+ E +++V +
Sbjct: 103 DLGDYYEKEALLLLRECKMQESFDPFKKGLQQFIDLSQDKNAYIIRRIDQILESMIIVIE 162

Query: 84  LNGSSRATESH---SFDMFEQEQHQESKK 7
             GS      H      +FEQ   ++S+K
Sbjct: 163 DMGSLEQAREHIKQGLQIFEQLLGKQSEK 191


>tr|Q4L8T6|Q4L8T6_STAHJ Similar to unknown protein OS=Staphylococcus
           haemolyticus (strain JCSC1435) GN=SH0630 PE=4 SV=1
          Length = 266

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
 Frame = -1

Query: 276 VINRRDNTADEMSNILSEEGLLLGNGVRVQNSFDPALESVS-----VEKKVGVDSKINQL 112
           ++N   +   + +N  ++  +       VQN  D   + V      ++ KV  DS+I Q+
Sbjct: 130 ILNNNSSDNQQTNNASNDNNVSKDYKNEVQNQSDNIKQQVEDAKNDIKDKVDTDSRIKQI 189

Query: 111 AEDVVLVSQLNGSSRATESHSFDMFEQEQHQESKK 7
            ED   V+ L  S +  E      F QEQ  + K+
Sbjct: 190 QED---VNNLKNSEQTGEDSKLTKFYQEQVNKLKE 221


>tr|Q32LN4|Q32LN4_BOVIN Coiled-coil domain containing 19 OS=Bos
           taurus GN=CCDC19 PE=2 SV=2
          Length = 549

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 23/100 (23%), Positives = 47/100 (47%)
 Frame = -1

Query: 312 KKDANEQKEYVWVINRRDNTADEMSNILSEEGLLLGNGVRVQNSFDPALESVSVEKKVGV 133
           +K   +QKE VW  NR+ +  +E++   ++  L   N +R++       E +   KK+ +
Sbjct: 143 RKKIMKQKEMVWRNNRKLSDLEEVAKERAQNLLQRANQLRMEQE-----EELKDMKKIIL 197

Query: 132 DSKINQLAEDVVLVSQLNGSSRATESHSFDMFEQEQHQES 13
           ++K + + +  +L  QL       E    D   + + Q+S
Sbjct: 198 NAKCHAIRDAQILEKQLIQKELDAEEKRLDQMMEVERQKS 237


>tr|B4E1U2|B4E1U2_HUMAN cDNA FLJ53421, highly similar to Homo
           sapiens guanylate binding protein family, member 6
           (GBP6), mRNA OS=Homo sapiens PE=2 SV=1
          Length = 604

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 306 DANEQKEYVWVINRRDNTADEMSNILSEEGLLLGNGVR 193
           D  +  +  W+    DN ADE++ ILS    L+G+GV+
Sbjct: 554 DTTKNDDTPWIARTLDNLADELTAILSAPAKLIGHGVK 591


>tr|B4DRX0|B4DRX0_HUMAN cDNA FLJ59401, highly similar to Homo
           sapiens guanylate binding protein family, member 6
           (GBP6), mRNA OS=Homo sapiens PE=2 SV=1
          Length = 503

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 306 DANEQKEYVWVINRRDNTADEMSNILSEEGLLLGNGVR 193
           D  +  +  W+    DN ADE++ ILS    L+G+GV+
Sbjct: 453 DTTKNDDTPWIARTLDNLADELTAILSAPAKLIGHGVK 490


>tr|B0AZP3|B0AZP3_HUMAN cDNA, FLJ79483, highly similar to Homo
           sapiens guanylate binding protein family, member 6
           (GBP6), mRNA OS=Homo sapiens PE=2 SV=1
          Length = 633

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 306 DANEQKEYVWVINRRDNTADEMSNILSEEGLLLGNGVR 193
           D  +  +  W+    DN ADE++ ILS    L+G+GV+
Sbjct: 583 DTTKNDDTPWIARTLDNLADELTAILSAPAKLIGHGVK 620


>tr|A8K2N8|A8K2N8_HUMAN cDNA FLJ77935, highly similar to Homo
           sapiens guanylate binding protein family, member 6
           (GBP6), mRNA OS=Homo sapiens PE=2 SV=1
          Length = 633

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 306 DANEQKEYVWVINRRDNTADEMSNILSEEGLLLGNGVR 193
           D  +  +  W+    DN ADE++ ILS    L+G+GV+
Sbjct: 583 DTTKNDDTPWIARTLDNLADELTAILSAPAKLIGHGVK 620