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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920539
Clone id YMU001_000138_D02
Library
Length 553
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000138_D02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGCAAGGCAAACGCCCTCCTGATCTATTGCTCAATACCTATCAATAAAGAAGGCCTCGAT
ATGATAGGTCTTTTAAGTCCAATGGTTTCTCAAACTTGGCAATAGCTTGATCGTGATCTC
CTAATGAGTATAAAGCAGCAAAAGAGGCTCTTCTCCAGGTTAGGTTATATCCTTAAATAC
TGGTTATGTTGGTGCACCATAATCCAAAAGCTCCAATGCCCAGCTATAGTGCTTGGGCTC
CTTGATTGTTGCTTCCTTGTAATGATTGCTTGCTCCAAAGAGAAAACAAAACAATGCCGA
GACTGACAGGCAGAAGACTGTCCCAAAGATCCTCATCTTCCTCAGCTGCATGAATCACTA
AAGTGTAAGCATCTCTGGCTTCATGCATCTTACGAAGAGCAAAGAGCGTGTCTCTTTCCT
AGAATTAGGGAGTGACATTTGTTGGTCTAAGCTCTCTTGAAGCTCATCAGAGCTTCCTTG
TACAATCTGTGGTCAGACAATCTGGGCCAAGTTCTTCCCAAGGTCTTTTAGCGATAATTA
CTTGACTAGTCAC
■■Homology search results ■■ -
sp_hit_id Q8S8L9
Definition sp|Q8S8L9|Y2245_ARATH Uncharacterized TPR repeat-containing protein At2g32450 OS=Arabidopsis thaliana
Align length 59
Score (bit) 42.7
E-value 1.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920539|Adiantum capillus-veneris mRNA, clone:
YMU001_000138_D02.
         (553 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8S8L9|Y2245_ARATH Uncharacterized TPR repeat-containing prot...    43   1e-07
sp|O23052|Y1515_ARATH Uncharacterized TPR repeat-containing prot...    44   6e-07

>sp|Q8S8L9|Y2245_ARATH Uncharacterized TPR repeat-containing protein
           At2g32450 OS=Arabidopsis thaliana GN=At2g32450 PE=1 SV=1
          Length = 802

 Score = 42.7 bits (99), Expect(3) = 1e-07
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
 Frame = -1

Query: 454 ELRPTNVTP*F*ERDTLFALRKMHEARDAYTLVIHAAEEDEDLWDSLLP---VSLGIVL 287
           EL+PT+V P F   + L+ L K  E++D + L + AAE   + W  LLP   V+LGI L
Sbjct: 257 ELQPTDVRPHFKAGNCLYVLGKYKESKDEFLLALEAAESGGNQWAYLLPQIYVNLGISL 315



 Score = 28.9 bits (63), Expect(3) = 1e-07
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = -3

Query: 500 LSDHRLYKEALMSFKRA 450
           L +H+L+KEAL+SFKRA
Sbjct: 239 LYEHQLFKEALVSFKRA 255



 Score = 22.7 bits (47), Expect(3) = 1e-07
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 282 LFGASNHYKEATIKEPKHYSWALELL 205
           +  A  +Y+EA I  P HY  AL+LL
Sbjct: 321 VLSACEYYREAAILCPTHYR-ALKLL 345


>sp|O23052|Y1515_ARATH Uncharacterized TPR repeat-containing protein
           At1g05150 OS=Arabidopsis thaliana GN=At1g05150 PE=1 SV=1
          Length = 808

 Score = 43.9 bits (102), Expect(2) = 6e-07
 Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 19/147 (12%)
 Frame = -1

Query: 454 ELRPTNVTP*F*ERDTLFALRKMHEARDAYTLVIHAAEEDEDLWDSLLP---VSLGIVLF 284
           EL+PT+V P F   + L+ L K  E++D + L + AAE   + W  LLP   V+LGI L 
Sbjct: 262 ELQPTDVRPHFKAGNCLYVLGKCKESKDEFLLALEAAESGGNQWAYLLPQIYVNLGIALE 321

Query: 283 SLWSKQSLQGSNNQGAQAL*LGIGAFGLWCTNITSI*GYNLTWRRASFA----------- 137
                 S      + A        A  L  + +  +  Y    +    A           
Sbjct: 322 GEGMVLSACEYYREAAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIYLKPDYADAH 381

Query: 136 -----ALYSLGDHDQAIAKFEKPLDLK 71
                +L+S+G+ ++AI  F++ +DLK
Sbjct: 382 CDLASSLHSMGEDERAIEVFQRAIDLK 408



 Score = 28.9 bits (63), Expect(2) = 6e-07
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = -3

Query: 500 LSDHRLYKEALMSFKRA 450
           L +H+L+KEAL+SFKRA
Sbjct: 244 LYEHQLFKEALVSFKRA 260
tr_hit_id Q10NP2
Definition tr|Q10NP2|Q10NP2_ORYSJ Os03g0263900 protein OS=Oryza sativa subsp. japonica
Align length 148
Score (bit) 43.9
E-value 9.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920539|Adiantum capillus-veneris mRNA, clone:
YMU001_000138_D02.
         (553 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q10NP2|Q10NP2_ORYSJ Os03g0263900 protein OS=Oryza sativa subs...    44   9e-06
tr|A2XET8|A2XET8_ORYSI Putative uncharacterized protein OS=Oryza...    44   9e-06
tr|A3AGB6|A3AGB6_ORYSJ Putative uncharacterized protein OS=Oryza...    44   9e-06
tr|B6SSY1|B6SSY1_MAIZE Calcium ion binding protein OS=Zea mays P...    40   1e-04
tr|A7NT17|A7NT17_VITVI Chromosome chr18 scaffold_1, whole genome...    37   7e-04
tr|A5B7X4|A5B7X4_VITVI Putative uncharacterized protein OS=Vitis...    37   7e-04
tr|A9RQR3|A9RQR3_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.008
tr|A9RZU2|A9RZU2_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.24 
tr|B3TZA7|B3TZA7_ORYLA Novel immune-type receptor 18 isoform 1 O...    35   3.5  
tr|B0CCK7|B0CCK7_ACAM1 Putative uncharacterized protein OS=Acary...    35   3.5  

>tr|Q10NP2|Q10NP2_ORYSJ Os03g0263900 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0263900 PE=4 SV=1
          Length = 848

 Score = 43.9 bits (102), Expect(2) = 9e-06
 Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 20/148 (13%)
 Frame = -1

Query: 454 ELRPTNVTP*F*ERDTLFALRKMHEARDAYTLVIHAAEEDEDLWDSLLP---VSLGIVL- 287
           EL+PT+V P F   + L+AL +  EA++ Y L + AAE        +LP   V+LGI + 
Sbjct: 302 ELQPTDVRPHFRAGNCLYALGRHSEAKEEYLLALEAAEAGGSQSADILPQIHVNLGIAME 361

Query: 286 --------FSLWSKQSLQGSNNQGAQAL*LGIGAFGLWCTNITSI*GYNLTWRRASFA-- 137
                      + + ++   ++  A  L LG   FG+              + +  +A  
Sbjct: 362 AEGMVLGACEHYREAAILCPSHARALKL-LGSALFGVGEYRAAEKALEEAIFLKPDYADA 420

Query: 136 ------ALYSLGDHDQAIAKFEKPLDLK 71
                 AL+++GD D+A+ +F+K +DLK
Sbjct: 421 HCDLGSALHAIGDDDRAVQEFQKAIDLK 448



 Score = 28.5 bits (62), Expect(2) = 9e-06
 Identities = 11/17 (64%), Positives = 16/17 (94%)
 Frame = -3

Query: 500 LSDHRLYKEALMSFKRA 450
           LS+HRL+++AL SF+RA
Sbjct: 284 LSEHRLFRDALSSFRRA 300


>tr|A2XET8|A2XET8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_10852 PE=4 SV=1
          Length = 848

 Score = 43.9 bits (102), Expect(2) = 9e-06
 Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 20/148 (13%)
 Frame = -1

Query: 454 ELRPTNVTP*F*ERDTLFALRKMHEARDAYTLVIHAAEEDEDLWDSLLP---VSLGIVL- 287
           EL+PT+V P F   + L+AL +  EA++ Y L + AAE        +LP   V+LGI + 
Sbjct: 302 ELQPTDVRPHFRAGNCLYALGRHSEAKEEYLLALEAAEAGGSQSADILPQIHVNLGIAME 361

Query: 286 --------FSLWSKQSLQGSNNQGAQAL*LGIGAFGLWCTNITSI*GYNLTWRRASFA-- 137
                      + + ++   ++  A  L LG   FG+              + +  +A  
Sbjct: 362 AEGMVLGACEHYREAAILCPSHARALKL-LGSALFGVGEYRAAEKALEEAIFLKPDYADA 420

Query: 136 ------ALYSLGDHDQAIAKFEKPLDLK 71
                 AL+++GD D+A+ +F+K +DLK
Sbjct: 421 HCDLGSALHAIGDDDRAVQEFQKAIDLK 448



 Score = 28.5 bits (62), Expect(2) = 9e-06
 Identities = 11/17 (64%), Positives = 16/17 (94%)
 Frame = -3

Query: 500 LSDHRLYKEALMSFKRA 450
           LS+HRL+++AL SF+RA
Sbjct: 284 LSEHRLFRDALSSFRRA 300


>tr|A3AGB6|A3AGB6_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_009838 PE=4 SV=1
          Length = 810

 Score = 43.9 bits (102), Expect(2) = 9e-06
 Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 20/148 (13%)
 Frame = -1

Query: 454 ELRPTNVTP*F*ERDTLFALRKMHEARDAYTLVIHAAEEDEDLWDSLLP---VSLGIVL- 287
           EL+PT+V P F   + L+AL +  EA++ Y L + AAE        +LP   V+LGI + 
Sbjct: 264 ELQPTDVRPHFRAGNCLYALGRHSEAKEEYLLALEAAEAGGSQSADILPQIHVNLGIAME 323

Query: 286 --------FSLWSKQSLQGSNNQGAQAL*LGIGAFGLWCTNITSI*GYNLTWRRASFA-- 137
                      + + ++   ++  A  L LG   FG+              + +  +A  
Sbjct: 324 AEGMVLGACEHYREAAILCPSHARALKL-LGSALFGVGEYRAAEKALEEAIFLKPDYADA 382

Query: 136 ------ALYSLGDHDQAIAKFEKPLDLK 71
                 AL+++GD D+A+ +F+K +DLK
Sbjct: 383 HCDLGSALHAIGDDDRAVQEFQKAIDLK 410



 Score = 28.5 bits (62), Expect(2) = 9e-06
 Identities = 11/17 (64%), Positives = 16/17 (94%)
 Frame = -3

Query: 500 LSDHRLYKEALMSFKRA 450
           LS+HRL+++AL SF+RA
Sbjct: 246 LSEHRLFRDALSSFRRA 262


>tr|B6SSY1|B6SSY1_MAIZE Calcium ion binding protein OS=Zea mays PE=2
           SV=1
          Length = 840

 Score = 39.7 bits (91), Expect(2) = 1e-04
 Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 20/148 (13%)
 Frame = -1

Query: 454 ELRPTNVTP*F*ERDTLFALRKMHEARDAYTLVIHAAEEDEDLWDSLLP---VSLGIVL- 287
           EL+PT+V P F   + L+AL +  EA++ Y L + AAE        +LP   V+LGI + 
Sbjct: 294 ELQPTDVRPHFRAGNCLYALGRHAEAKEEYLLALEAAEAGGSQSADILPQIHVNLGIAME 353

Query: 286 --------FSLWSKQSLQGSNNQGAQAL*LGIGAFGLWCTNITSI*GYNLTWRRASFA-- 137
                      + + ++   ++  A  L LG   FG+              + +  +A  
Sbjct: 354 AEGMVLGACEHYREAAILCPSHARALKL-LGSALFGVGEYRAAEKALEEAIFLKEDYADA 412

Query: 136 ------ALYSLGDHDQAIAKFEKPLDLK 71
                 AL+++G+ D+AI +F+  +DLK
Sbjct: 413 HCDLGSALHAVGEDDRAIQEFQTAIDLK 440



 Score = 28.5 bits (62), Expect(2) = 1e-04
 Identities = 11/17 (64%), Positives = 16/17 (94%)
 Frame = -3

Query: 500 LSDHRLYKEALMSFKRA 450
           LS+HRL+++AL SF+RA
Sbjct: 276 LSEHRLFRDALASFRRA 292


>tr|A7NT17|A7NT17_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014498001
           PE=4 SV=1
          Length = 818

 Score = 37.0 bits (84), Expect(2) = 7e-04
 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 19/147 (12%)
 Frame = -1

Query: 454 ELRPTNVTP*F*ERDTLFALRKMHEARDAYTLVIHAAEEDEDLWDSLLP---VSLGIVLF 284
           EL+P +V   F   + L+ L +  EA++ +TL + AAE   +    LLP   V+LGI L 
Sbjct: 256 ELQPVDVRSHFRAGNCLYVLGRHGEAKEEFTLALEAAENGGNQSAYLLPQIHVNLGIALE 315

Query: 283 SLWSKQSLQGSNNQGAQAL*LGIGAFGLWCTNITSI*GYNLT--------WRRASFA--- 137
                 S      + A        A  L  + +  +  Y           + +A +A   
Sbjct: 316 GEGMVMSACEHYREAAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFMKADYADAH 375

Query: 136 -----ALYSLGDHDQAIAKFEKPLDLK 71
                AL+++G+ ++AI  F+K +DLK
Sbjct: 376 CDLASALHAMGEGEKAIPVFQKAIDLK 402



 Score = 28.9 bits (63), Expect(2) = 7e-04
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = -3

Query: 500 LSDHRLYKEALMSFKRA 450
           L +H+L+KEAL+SFKRA
Sbjct: 238 LYEHQLFKEALVSFKRA 254


>tr|A5B7X4|A5B7X4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_011396 PE=4 SV=1
          Length = 799

 Score = 37.0 bits (84), Expect(2) = 7e-04
 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 19/147 (12%)
 Frame = -1

Query: 454 ELRPTNVTP*F*ERDTLFALRKMHEARDAYTLVIHAAEEDEDLWDSLLP---VSLGIVLF 284
           EL+P +V   F   + L+ L +  EA++ +TL + AAE   +    LLP   V+LGI L 
Sbjct: 256 ELQPVDVRSHFRAGNCLYVLGRHGEAKEEFTLALEAAENGGNQSAYLLPQIHVNLGIALE 315

Query: 283 SLWSKQSLQGSNNQGAQAL*LGIGAFGLWCTNITSI*GYNLT--------WRRASFA--- 137
                 S      + A        A  L  + +  +  Y           + +A +A   
Sbjct: 316 GEGMVMSACEHYREAAILCPTHFRALKLLGSALFGVGEYRAAVKALEEAIFMKADYADAH 375

Query: 136 -----ALYSLGDHDQAIAKFEKPLDLK 71
                AL+++G+ ++AI  F+K +DLK
Sbjct: 376 CDLASALHAMGEGEKAIPVFQKAIDLK 402



 Score = 28.9 bits (63), Expect(2) = 7e-04
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = -3

Query: 500 LSDHRLYKEALMSFKRA 450
           L +H+L+KEAL+SFKRA
Sbjct: 238 LYEHQLFKEALVSFKRA 254


>tr|A9RQR3|A9RQR3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_117969 PE=4 SV=1
          Length = 809

 Score = 43.5 bits (101), Expect = 0.008
 Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 20/147 (13%)
 Frame = -1

Query: 454 ELRPTNVTP*F*ERDTLFALRKMHEARDAYTLVIHAAEEDEDLWDSLLP---VSLGIVL- 287
           +L+P +V   F   ++L++L +  EAR +Y   + A EE+   W  +LP   V+LGI L 
Sbjct: 262 QLKPQDVRAHFLVGNSLYSLGRYEEARTSYQKALEAGEENAQEWQGILPQVHVNLGIALE 321

Query: 286 --------FSLWSKQSLQGSNNQGAQAL*LGIGAFGLW-------CTNITSI*GYNLTWR 152
                      + + ++    +  A  L LG   FGL        C     +   + T  
Sbjct: 322 GEGMLMCACDHYREAAILNPRHYRALKL-LGSALFGLGEYRAAQKCLEEALVLKPDYTDA 380

Query: 151 RASF-AALYSLGDHDQAIAKFEKPLDL 74
                +AL++L D +QAI +F+K +DL
Sbjct: 381 HCDLGSALHALHDDEQAILEFQKTIDL 407


>tr|A9RZU2|A9RZU2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_122143 PE=4 SV=1
          Length = 817

 Score = 38.5 bits (88), Expect = 0.24
 Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 20/147 (13%)
 Frame = -1

Query: 454 ELRPTNVTP*F*ERDTLFALRKMHEARDAYTLVIHAAEEDEDLWDSLLP---VSLGIVL- 287
           +L+P +V   F   +  ++L    EAR +Y   + A EE+   W+ +LP   V+LGI L 
Sbjct: 273 QLKPQDVRAHFLVGNAFYSLGDFVEARTSYQKALEAGEENAQEWEGILPQVHVNLGIALE 332

Query: 286 --------FSLWSKQSLQGSNNQGAQAL*LGIGAFGLW-------CTNITSI*GYNLTWR 152
                      + + ++    +  A  L LG   +GL        C     +   +    
Sbjct: 333 GEGMLLCACDHYREAAILNPRHYRALKL-LGSALYGLGEYRAAQKCLEEALVLKPDYADA 391

Query: 151 RASF-AALYSLGDHDQAIAKFEKPLDL 74
                +AL+SL D +QAI++F+K +DL
Sbjct: 392 HCDLGSALHSLHDVEQAISEFQKAIDL 418


>tr|B3TZA7|B3TZA7_ORYLA Novel immune-type receptor 18 isoform 1
           OS=Oryzias latipes GN=NITR18 PE=2 SV=1
          Length = 294

 Score = 34.7 bits (78), Expect = 3.5
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
 Frame = +1

Query: 199 IIQKLQCPAIVLG-LLDCCFLVMIAC----SKEKTKQCRD*QAEDCPKDPHLPQ 345
           +I++L   AIVLG LL CC LV I      +K+K +QC++ +A D  +    P+
Sbjct: 240 LIKQLSPDAIVLGTLLACCVLVNITLIVMRTKQKCEQCKELKASDLAEQDRSPE 293


>tr|B0CCK7|B0CCK7_ACAM1 Putative uncharacterized protein
           OS=Acaryochloris marina (strain MBIC 11017) GN=AM1_3040
           PE=4 SV=1
          Length = 611

 Score = 34.7 bits (78), Expect = 3.5
 Identities = 25/64 (39%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = -1

Query: 418 ERDTLFALRKMHEARDAYTLVIHAAEEDEDLWD--SLLPVSLGIVLFSLWSKQSLQGSNN 245
           +R T  A     EA D   LVI A   DEDL D   L+    GIV+ + W K S  G   
Sbjct: 67  DRITTQAALAQLEAHDTVLLVIKATHVDEDLADLWPLVVGKRGIVVITFWDKASQAGFTQ 126

Query: 244 QGAQ 233
           Q  Q
Sbjct: 127 QIVQ 130