BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920540|Adiantum capillus-veneris mRNA, clone:
YMU001_000138_D03.
         (305 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6C1B1|MED16_YARLI Mediator of RNA polymerase II transcriptio...    29   6.4  
sp|Q54R84|AP4B_DICDI AP-4 complex subunit beta OS=Dictyostelium ...    29   6.4  

>sp|Q6C1B1|MED16_YARLI Mediator of RNA polymerase II transcription
           subunit 16 OS=Yarrowia lipolytica GN=SIN4 PE=3 SV=1
          Length = 924

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
 Frame = -1

Query: 233 FSACICMSKYVAPRLWMLNYQQEEHN*TTL----IHFDKDVAKC----TRGRKNLLSCYP 78
           F ACI +++    +LW  N   + +N   L    +H D  ++      T+  K LL+CY 
Sbjct: 245 FGACIGVTRSQVLKLWTQNGPSQPYNLVKLSLNQLHSDDIISHASFAGTKDHKMLLACYS 304

Query: 77  P 75
           P
Sbjct: 305 P 305


>sp|Q54R84|AP4B_DICDI AP-4 complex subunit beta OS=Dictyostelium
           discoideum GN=ap4b1 PE=3 SV=1
          Length = 838

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 177 LSTRRAQLNYSDTLRQRRRQMYQRPKEPSILL 82
           LST +  L Y+D   + + Q+Y+R KEP I L
Sbjct: 264 LSTIKIFLKYTDEFEEIQEQVYERIKEPLITL 295

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920540|Adiantum capillus-veneris mRNA, clone:
YMU001_000138_D03.
         (305 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7GA73|B7GA73_PHATR Predicted protein OS=Phaeodactylum tricor...    34   4.2  
tr|B4LL53|B4LL53_DROVI GJ20081 OS=Drosophila virilis GN=GJ20081 ...    33   5.5  

>tr|B7GA73|B7GA73_PHATR Predicted protein OS=Phaeodactylum
           tricornutum CCAP 1055/1 GN=PHATRDRAFT_49316 PE=4 SV=1
          Length = 526

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
 Frame = -1

Query: 197 PRLWMLNYQQEEHN*TTLIHFDKDVAKCTRGRKNLLSC--------YPPFLQTVFKEAF 45
           PRL +L  +Q  H+   LIHF +D  +C+R R +   C        YP FL  + +  F
Sbjct: 132 PRLKLLTVEQALHDAVRLIHFVRDRVRCSRDRFSPRYCPVITVGGSYPGFLSAMARLRF 190


>tr|B4LL53|B4LL53_DROVI GJ20081 OS=Drosophila virilis GN=GJ20081
           PE=4 SV=1
          Length = 1319

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +2

Query: 38  IAKRLP*KQSAGKEDSKIEGSFGLWYIWRRLCRSVSE 148
           IAK++P +   G   +  E +FGLW+IWR+  +S S+
Sbjct: 165 IAKQIPHQIKDGTIGALTEENFGLWFIWRKELKSRSQ 201