BP920541 |
Clone id |
YMU001_000138_D04 |
Library |
YMU01 |
Length |
390 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000138_D04. |
Accession |
BP920541 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CTTCACCGGATGCCACATAGAGATGTGAATCGCTGCCAAAACCCAAGGCTCGTAGCATAA GCCCCACCTCCTCTGGTGTAAGAGGGCACTTCCCATTCCTCCGTTCTCTCTCCGGATTTT TTTGATGCAGAGTTTCCACCTCTTGCGAATTAAGCCCAGCTCGTTCTAGCTCCACATCAC CCCCTCCGTAATAGCAGCCGGAGAATGCCAGCATGTCAGGTTCGAATCTGAGGTGCAGTG CAATGTAGCGCCCACTTCTCTGCCTCAGCCTTCCAACCAAAGAGTCTCCCATTGCCTTGA TAGGCGGTGTAAAACGAAGGGCATGGTAATTCACCCTACAGCGAAGCTTTTGTAGATCCT TCTCCAATTTGTTGGAGAGTCTGTAATCAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8W486 |
Definition |
sp|Q8W486|Y1491_ARATH DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana |
Align length |
139 |
Score (bit) |
108.0 |
E-value |
6.0e-24 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920541|Adiantum capillus-veneris mRNA, clone: YMU001_000138_D04. (390 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q8W486|Y1491_ARATH DUF246 domain-containing protein At1g04910... 108 6e-24 sp|Q12N06|SYD_SHEDO Aspartyl-tRNA synthetase OS=Shewanella denit... 31 1.7 sp|A7HIX3|GSA_ANADF Glutamate-1-semialdehyde 2,1-aminomutase OS=... 31 1.7 sp|Q9V1G7|TRPF_PYRAB N-(5'-phosphoribosyl)anthranilate isomerase... 31 2.2 sp|Q081N5|SYD_SHEFN Aspartyl-tRNA synthetase OS=Shewanella frigi... 31 2.2 sp|A8FUW6|SYD_SHESH Aspartyl-tRNA synthetase OS=Shewanella sedim... 30 2.9 sp|A3QEP7|SYD_SHELP Aspartyl-tRNA synthetase OS=Shewanella loihi... 30 3.8 sp|Q483C7|SYD_COLP3 Aspartyl-tRNA synthetase OS=Colwellia psychr... 30 3.8 sp|Q2IHP8|GSA_ANADE Glutamate-1-semialdehyde 2,1-aminomutase OS=... 30 3.8 sp|P35442|TSP2_HUMAN Thrombospondin-2 OS=Homo sapiens GN=THBS2 P... 30 4.9 sp|A1SST6|SYD_PSYIN Aspartyl-tRNA synthetase OS=Psychromonas ing... 30 4.9 sp|A0LIP3|GSA_SYNFM Glutamate-1-semialdehyde 2,1-aminomutase OS=... 30 4.9 sp|P93184|LOX21_HORVU Lipoxygenase 2.1, chloroplastic OS=Hordeum... 29 8.4 sp|A1RJQ6|SYD_SHESW Aspartyl-tRNA synthetase OS=Shewanella sp. (... 29 8.4 sp|Q0HUY7|SYD_SHESR Aspartyl-tRNA synthetase OS=Shewanella sp. (... 29 8.4 sp|Q0HIZ5|SYD_SHESM Aspartyl-tRNA synthetase OS=Shewanella sp. (... 29 8.4 sp|A0KWL5|SYD_SHESA Aspartyl-tRNA synthetase OS=Shewanella sp. (... 29 8.4 sp|A4Y6S5|SYD_SHEPC Aspartyl-tRNA synthetase OS=Shewanella putre... 29 8.4 sp|A8H549|SYD_SHEPA Aspartyl-tRNA synthetase OS=Shewanella peale... 29 8.4 sp|Q8EEE9|SYD_SHEON Aspartyl-tRNA synthetase OS=Shewanella oneid... 29 8.4 sp|B0TSA3|SYD_SHEHH Aspartyl-tRNA synthetase OS=Shewanella halif... 29 8.4 sp|A9L3I1|SYD_SHEB9 Aspartyl-tRNA synthetase OS=Shewanella balti... 29 8.4 sp|A6WNQ6|SYD_SHEB8 Aspartyl-tRNA synthetase OS=Shewanella balti... 29 8.4 sp|A3D477|SYD_SHEB5 Aspartyl-tRNA synthetase OS=Shewanella balti... 29 8.4 sp|Q5ZMV8|RPGP2_CHICK Rap1 GTPase-activating protein 2 OS=Gallus... 29 8.4
>sp|Q8W486|Y1491_ARATH DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1 Length = 519
Score = 108 bits (271), Expect = 6e-24 Identities = 62/139 (44%), Positives = 91/139 (65%), Gaps = 11/139 (7%) Frame = -3
Query: 385 YRLSNKLEK-DLQKLRCRVNYHALRFTPPIKAMGDSLVGRLRQRSGRYIALHLRFEPDML 209 +RL+ +++ + Q+LRCRVNYHALRF P I + +S+V +LR + G ++++HLRFE DML Sbjct: 210 HRLAEEIDNPEYQRLRCRVNYHALRFKPHIMKLSESIVDKLRSQ-GHFMSIHLRFEMDML 268
Query: 208 AFSGCYYGGGDVELERAGLNSQEVETLHQKNPER---------ERRN-GKCPLTPEEVGL 59 AF+GC+ D+ N +E + L + E ERR GKCPLTPEEVGL Sbjct: 269 AFAGCF----DI------FNPEEQKILRKYRKENFADKRLIYNERRAIGKCPLTPEEVGL 318
Query: 58 MLRALGFGSDSHLYVASGE 2 +LRA+ F + + +Y+A+GE Sbjct: 319 ILRAMRFDNSTRIYLAAGE 337
>sp|Q12N06|SYD_SHEDO Aspartyl-tRNA synthetase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=aspS PE=3 SV=1 Length = 593
Score = 31.2 bits (69), Expect = 1.7 Identities = 19/69 (27%), Positives = 30/69 (43%) Frame = -3
Query: 211 LAFSGCYYGGGDVELERAGLNSQEVETLHQKNPERERRNGKCPLTPEEVGLMLRALGFGS 32 + +GC GGG V + A + S L + E + E+ G +L AL +G+ Sbjct: 476 MVLNGCELGGGSVRIHNAEMQSAVFRILGIEEEEAK----------EKFGFLLEALRYGT 525
Query: 31 DSHLYVASG 5 H +A G Sbjct: 526 PPHAGLAFG 534
>sp|A7HIX3|GSA_ANADF Glutamate-1-semialdehyde 2,1-aminomutase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=hemL PE=3 SV=1 Length = 429
Score = 31.2 bits (69), Expect = 1.7 Identities = 16/30 (53%), Positives = 19/30 (63%) Frame = -3
Query: 217 DMLAFSGCYYGGGDVELERAGLNSQEVETL 128 D+L F GCY+G GD L +AG VETL Sbjct: 136 DILKFEGCYHGAGDPLLVKAG---SGVETL 162
>sp|Q9V1G7|TRPF_PYRAB N-(5'-phosphoribosyl)anthranilate isomerase OS=Pyrococcus abyssi GN=trpF PE=3 SV=1 Length = 208
Score = 30.8 bits (68), Expect = 2.2 Identities = 25/79 (31%), Positives = 36/79 (45%) Frame = -3
Query: 268 LRQRSGRYIALHLRFEPDMLAFSGCYYGGGDVELERAGLNSQEVETLHQKNPERERRNGK 89 + + RYI +H EP +L + YG VE+ +A QE E NPER+ + Sbjct: 68 IERTEARYIQIHSDVEPSLLPYLKDEYG---VEIMKAFRVPQESE-----NPERDAQMLL 119
Query: 88 CPLTPEEVGLMLRALGFGS 32 + E L+L G GS Sbjct: 120 KKIRKYEADLILLDTGAGS 138
>sp|Q081N5|SYD_SHEFN Aspartyl-tRNA synthetase OS=Shewanella frigidimarina (strain NCIMB 400) GN=aspS PE=3 SV=1 Length = 591
Score = 30.8 bits (68), Expect = 2.2 Identities = 19/69 (27%), Positives = 30/69 (43%) Frame = -3
Query: 211 LAFSGCYYGGGDVELERAGLNSQEVETLHQKNPERERRNGKCPLTPEEVGLMLRALGFGS 32 + +GC GGG V + A + S L + E + E+ G +L AL +G+ Sbjct: 476 MVLNGCELGGGSVRIHNAEMQSTVFSILGIEAEEAQ----------EKFGFLLEALRYGT 525
Query: 31 DSHLYVASG 5 H +A G Sbjct: 526 PPHAGLAFG 534
>sp|A8FUW6|SYD_SHESH Aspartyl-tRNA synthetase OS=Shewanella sediminis (strain HAW-EB3) GN=aspS PE=3 SV=1 Length = 595
Score = 30.4 bits (67), Expect = 2.9 Identities = 20/69 (28%), Positives = 30/69 (43%) Frame = -3
Query: 211 LAFSGCYYGGGDVELERAGLNSQEVETLHQKNPERERRNGKCPLTPEEVGLMLRALGFGS 32 + +GC GGG V + + + S L E E N E+ G +L AL +G+ Sbjct: 477 MVLNGCELGGGSVRIHNSEMQSAVFRIL---GIEEEEAN-------EKFGFLLEALRYGT 526
Query: 31 DSHLYVASG 5 H +A G Sbjct: 527 PPHAGLAFG 535
>sp|A3QEP7|SYD_SHELP Aspartyl-tRNA synthetase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=aspS PE=3 SV=1 Length = 592
Score = 30.0 bits (66), Expect = 3.8 Identities = 19/69 (27%), Positives = 30/69 (43%) Frame = -3
Query: 211 LAFSGCYYGGGDVELERAGLNSQEVETLHQKNPERERRNGKCPLTPEEVGLMLRALGFGS 32 + +GC GGG V + A + S L + E + E+ G +L AL +G+ Sbjct: 477 MVLNGCELGGGSVRIYDAEMQSAVFRILGINDEEAQ----------EKFGFLLEALKYGT 526
Query: 31 DSHLYVASG 5 H +A G Sbjct: 527 PPHAGLAFG 535
>sp|Q483C7|SYD_COLP3 Aspartyl-tRNA synthetase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=aspS PE=3 SV=1 Length = 601
Score = 30.0 bits (66), Expect = 3.8 Identities = 18/69 (26%), Positives = 29/69 (42%) Frame = -3
Query: 211 LAFSGCYYGGGDVELERAGLNSQEVETLHQKNPERERRNGKCPLTPEEVGLMLRALGFGS 32 + +GC GGG V + + + L + E E E+ G +L AL +G+ Sbjct: 479 MVLNGCELGGGSVRIHNQDMQAAVFRILGISDEEAE----------EKFGFLLEALQYGA 528
Query: 31 DSHLYVASG 5 H +A G Sbjct: 529 PPHAGLAFG 537
>sp|Q2IHP8|GSA_ANADE Glutamate-1-semialdehyde 2,1-aminomutase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=hemL PE=3 SV=1 Length = 430
Score = 30.0 bits (66), Expect = 3.8 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = -3
Query: 217 DMLAFSGCYYGGGDVELERAGLNSQEVETL 128 D++ F GCY+G GD L +AG VETL Sbjct: 136 DIVKFDGCYHGAGDPLLVKAG---SGVETL 162
>sp|P35442|TSP2_HUMAN Thrombospondin-2 OS=Homo sapiens GN=THBS2 PE=1 SV=2 Length = 1172
Score = 29.6 bits (65), Expect = 4.9 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 8/73 (10%) Frame = -3
Query: 238 LHLRFE---PDMLAFSGCYYGGGDVELERAGLNSQEVE-----TLHQKNPERERRNGKCP 83 +HL FE D+L+ GC G G E+ N++ + T P ERR C Sbjct: 209 VHLVFENSVEDILSKKGCQQGQG-AEINAISENTETLRLGPHVTTEYVGPSSERRPEVCE 267
Query: 82 LTPEEVGLMLRAL 44 + EE+G M++ L Sbjct: 268 RSCEELGNMVQEL 280
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B6SVC7 |
Definition |
tr|B6SVC7|B6SVC7_MAIZE Auxin-independent growth promoter OS=Zea mays |
Align length |
129 |
Score (bit) |
207.0 |
E-value |
2.0e-52 |
Report |
|