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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920551
Clone id YMU001_000138_E02
Library
Length 513
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000138_E02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTTGCAGCAAATATCACTCTCACATTTGAGAGCAAACCATGTGTGGAATCTTCGACACAC
AATAAACAACTGCTGCTGCATAAAATTCAGCGTTCAAAATTTTAAAATTCTGATATGACG
AGCACGTCCAGAGCATGCCAAAACCCCAAGGTAGACTCTTAGATCACATATATCCAAGTC
CGAGTGTGCAAAATATGCCAAAAACACTGTTTTCGACCCAAAAACACAGCAAAAACTTGC
TGCTACTGCATAAATTTTGGAGGTCAAAATCAGCTCAAATGGACATCACCATTGCGTCCG
GAGCGTGCCAAAACCCCAGGTTACACCTTAACCTTGCATAAATCGCATTCGGTATGCAAA
AGTTATGCAAAAAACACTGTTTTTGGGGCCCGAAAAATGACCTGCGGAAATGAAAATCTG
CATTCTTCCTGCAAGTATGGCTGCAAATATCCATACACACTTGCAATACACTCTTCCCTC
AAGCTTGGGAATGCCCCTCAAGCTTCCATGAGC
■■Homology search results ■■ -
sp_hit_id Q9V969
Definition sp|Q9V969|GR57A_DROME Putative gustatory receptor 57a OS=Drosophila melanogaster
Align length 70
Score (bit) 37.0
E-value 0.054
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920551|Adiantum capillus-veneris mRNA, clone:
YMU001_000138_E02.
         (513 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9V969|GR57A_DROME Putative gustatory receptor 57a OS=Drosoph...    37   0.054
sp|Q1KVR9|CHLL_SCEOB Light-independent protochlorophyllide reduc...    32   2.2  
sp|Q3MAN6|CHLL_ANAVT Light-independent protochlorophyllide reduc...    30   6.5  
sp|Q8YM62|CHLL_ANASP Light-independent protochlorophyllide reduc...    30   6.5  
sp|P34288|PAC1_CAEEL GTPase-activating protein pac-1 OS=Caenorha...    30   8.5  
sp|P24177|ACRD_ECOLI Probable aminoglycoside efflux pump OS=Esch...    30   8.5  

>sp|Q9V969|GR57A_DROME Putative gustatory receptor 57a OS=Drosophila
           melanogaster GN=Gr57a PE=2 SV=1
          Length = 416

 Score = 37.0 bits (84), Expect = 0.054
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
 Frame = -1

Query: 396 FSGPKNSVFCITFAYRMRFMQG*GVTWGFGTLRTQW*CPFELILTSKIYAVA---ASFCC 226
           F  P+    C  F   ++F+ G     GFG  R+     F +   S+IY+++   A+FCC
Sbjct: 7   FREPETVFDCAAFICILQFLMGCN---GFGIRRST----FRISWASRIYSMSVAIAAFCC 59

Query: 225 VFGSKTVFLA 196
           +FGS +V LA
Sbjct: 60  LFGSLSVLLA 69


>sp|Q1KVR9|CHLL_SCEOB Light-independent protochlorophyllide
           reductase iron-sulfur ATP-binding protein OS=Scenedesmus
           obliquus GN=chlL PE=3 SV=1
          Length = 289

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = +2

Query: 296 VRSVPKPQVTP*PCINRIRYAKVMQKTLFLGPEK*PAEMKICILPASMAANIHTHLQYTL 475
           V + P P +   P I  IR ++V  KTLF   E  P    +C    ++A  + T  +  +
Sbjct: 192 VETCPMPILEVLPLIEDIRVSRVKGKTLFEMTESEPTLQFVCDFYLNIADQLLTQPEGVI 251

Query: 476 PSSLG 490
           P  LG
Sbjct: 252 PRELG 256


>sp|Q3MAN6|CHLL_ANAVT Light-independent protochlorophyllide
           reductase iron-sulfur ATP-binding protein OS=Anabaena
           variabilis (strain ATCC 29413 / PCC 7937) GN=chlL PE=3
           SV=2
          Length = 288

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = +2

Query: 296 VRSVPKPQVTP*PCINRIRYAKVMQKTLFLGPEK*PAEMKICILPASMAANIHTHLQYTL 475
           V +VP P +   P I  IR ++V  KTLF   E  P+   +C    S+A  I    +  +
Sbjct: 192 VEAVPMPVLEVLPLIEDIRVSRVKGKTLFEMAESDPSLNYVCDYYLSIADQILARPEGVV 251

Query: 476 PS 481
           P+
Sbjct: 252 PN 253


>sp|Q8YM62|CHLL_ANASP Light-independent protochlorophyllide
           reductase iron-sulfur ATP-binding protein OS=Anabaena
           sp. (strain PCC 7120) GN=chlL PE=3 SV=1
          Length = 288

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = +2

Query: 296 VRSVPKPQVTP*PCINRIRYAKVMQKTLFLGPEK*PAEMKICILPASMAANIHTHLQYTL 475
           V +VP P +   P I  IR ++V  KTLF   E  P+   +C    S+A  I    +  +
Sbjct: 192 VEAVPMPVLEVLPLIEDIRVSRVKGKTLFEMAESDPSLNYVCDYYLSIADQILARPEGVV 251

Query: 476 PS 481
           P+
Sbjct: 252 PN 253


>sp|P34288|PAC1_CAEEL GTPase-activating protein pac-1
           OS=Caenorhabditis elegans GN=pac-1 PE=1 SV=4
          Length = 1605

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 15/60 (25%), Positives = 35/60 (58%)
 Frame = +3

Query: 120 EHVQSMPKPQGRLLDHIYPSPSVQNMPKTLFSTQKHSKNLLLLHKFWRSKSAQMDITIAS 299
           +H Q++ +    ++ H+  S S   +  T  ST +++KN L++H++  +K++Q+    A+
Sbjct: 798 KHQQTVNELSAGIVSHLPTSKSFGGLSTTASSTTENAKNRLIMHRY-IAKNSQLQSPTAN 856


>sp|P24177|ACRD_ECOLI Probable aminoglycoside efflux pump
           OS=Escherichia coli (strain K12) GN=acrD PE=3 SV=3
          Length = 1037

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -3

Query: 160 KSLPWGFGMLWTCSSYQNFKILNAEFYAAAVVYCVSKIPHMVC 32
           K LP GFG+ WT  SYQ  ++  A+   A  +Y +S +   +C
Sbjct: 847 KQLPNGFGLEWTAMSYQE-RLSGAQ---APALYAISLLVVFLC 885
tr_hit_id B2X279
Definition tr|B2X279|B2X279_CHLMO Protochlorophyllide reductase ATP-binding subunit OS=Chlamydomonas moewusii
Align length 65
Score (bit) 33.5
E-value 6.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920551|Adiantum capillus-veneris mRNA, clone:
YMU001_000138_E02.
         (513 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2X279|B2X279_CHLMO Protochlorophyllide reductase ATP-binding...    33   6.2  
tr|Q7RZL2|Q7RZL2_NEUCR Predicted protein OS=Neurospora crassa GN...    33   6.4  
tr|B5G475|B5G475_TAEGU Putative uncharacterized protein OS=Taeni...    33   8.1  
tr|A0BIM8|A0BIM8_PARTE Chromosome undetermined scaffold_11, whol...    33   8.3  

>tr|B2X279|B2X279_CHLMO Protochlorophyllide reductase ATP-binding
           subunit OS=Chlamydomonas moewusii GN=chlL PE=4 SV=1
          Length = 289

 Score = 33.5 bits (75), Expect = 6.2
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = +2

Query: 296 VRSVPKPQVTP*PCINRIRYAKVMQKTLFLGPEK*PAEMKICILPASMAANIHTHLQYTL 475
           V + P P +   P I  IR ++V  KTLF   E  P+   IC    ++A ++ T  +  +
Sbjct: 192 VEACPMPVIELLPLIEEIRVSRVKGKTLFEMAESDPSLNYICDYYLNIADHLLTEPEGVI 251

Query: 476 PSSLG 490
           P  LG
Sbjct: 252 PRELG 256


>tr|Q7RZL2|Q7RZL2_NEUCR Predicted protein OS=Neurospora crassa
           GN=NCU00353 PE=4 SV=1
          Length = 177

 Score = 33.5 bits (75), Expect = 6.4
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = +1

Query: 283 TSPLRPERAKTPGYTLTLHKSHSVCKSYAKNTVFGARKMTCGNENLHSSCKYGCKYPYTL 462
           +S L  +R  T GY   L +S++      K+ +   +K+ C +  LHSS    C  P  L
Sbjct: 22  SSVLLLDRLLTGGYLRLLSESNATLSRSMKD-MGTVQKLLCTSPTLHSSVNVACVLPSEL 80

Query: 463 AIHSSLKLGN---APQASMS 513
             H+S+ L +    P + MS
Sbjct: 81  RAHASVWLSSYQEEPNSDMS 100


>tr|B5G475|B5G475_TAEGU Putative uncharacterized protein
           OS=Taeniopygia guttata PE=2 SV=1
          Length = 249

 Score = 33.1 bits (74), Expect = 8.1
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +3

Query: 114 YDEHVQSMPKPQGRLLDHIYPSPSVQNMPKTLFSTQKHSKNLLLLHKFWRSKSAQMDITI 293
           +  H +++P  QGR+ D   P  +   + + L S Q+H       H   R  +A +D+ +
Sbjct: 130 HGRHPRALPAGQGRVHDQALPGAARAPLGRHLHSCQRHQ------HSHLRDDAAPLDLLV 183

Query: 294 ASG 302
           A+G
Sbjct: 184 AAG 186


>tr|A0BIM8|A0BIM8_PARTE Chromosome undetermined scaffold_11, whole
            genome shotgun sequence OS=Paramecium tetraurelia
            GN=GSPATT00004767001 PE=4 SV=1
          Length = 1786

 Score = 33.1 bits (74), Expect = 8.3
 Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
 Frame = +1

Query: 145  PKVDS*ITYIQ--VRVCKICQKHCFRPKNTAKTCCYCINFGGQNQLKWTSPLRPERAKTP 318
            P  D  I Y +   + C+ C K C   +NT++TC  C         K  +   PE     
Sbjct: 899  PSCDCKIGYFENDQQTCQECNKRCKSCQNTSETCIEC---------KMITATPPECTCPD 949

Query: 319  GYTLTLHKSHSVCKSYAKNTVFGARKMTC 405
            GY   L +    C S  K T  G+ +  C
Sbjct: 950  GYYYGLEQGCVQCHSRCK-TCIGSNEYNC 977