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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920556
Clone id YMU001_000138_E07
Library
Length 418
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000138_E07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ACGCTTGAGGCTTCGCAATGCCTGTCAGAAGCTTGCATCAACAAATCAACAAAGTTTTAT
CTCCCAGCAAGCAAGAGCTCAATACAGTTGAAACTCGAGGCAGCCTTGGAGAGAACCTGC
GTTTTTCAACATAGTTGAAACTCAAGAGAAGTTTGTGCGAGAAATCCATTGCAAGCCAAG
GAATTGTTATTGAAGAGGCTAAGGTAGGAAAGGATAGCTGCACTACGAGAGAGAATAGCA
CCATTTACACTAGCGCAACACTGATATTGACCTCAATTGTTACTTGCGAGATTCTAGAGT
GGATGCATGGTGTGGTAGCACACGTAGTCCTCTCTCTCTCTCTCTCTCTCTGTGGGCGTG
ACAATGTTTACAATCAAATTGAGGTCCAGCTGGGAGAGGCAGAGAGAGAGAGCGGATC
■■Homology search results ■■ -
sp_hit_id Q9C507
Definition sp|Q9C507|PP111_ARATH Putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial OS=Arabidopsis thaliana
Align length 90
Score (bit) 32.3
E-value 0.76
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920556|Adiantum capillus-veneris mRNA, clone:
YMU001_000138_E07.
         (418 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9C507|PP111_ARATH Putative pentatricopeptide repeat-containi...    32   0.76 
sp|P46333|CSBC_BACSU Probable metabolite transport protein csbC ...    30   2.9  

>sp|Q9C507|PP111_ARATH Putative pentatricopeptide repeat-containing
           protein At1g69350, mitochondrial OS=Arabidopsis thaliana
           GN=PCMP-E66 PE=3 SV=1
          Length = 787

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 12/90 (13%)
 Frame = -1

Query: 304 IHSRISQVTIEVNISVALV*MVLFS-----LVVQLSFPTLASSITIPWLAM-------DF 161
           +H +I++   +++ ++    + ++S     L  +  F  +A    + W AM       +F
Sbjct: 224 VHGQITRKMFDLDETLCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEF 283

Query: 160 SHKLLLSFNYVEKRRFSPRLPRVSTVLSSC 71
           S K L SF+ + K    P L  + +VLSSC
Sbjct: 284 SEKALRSFSEMIKSGIEPNLVTLYSVLSSC 313


>sp|P46333|CSBC_BACSU Probable metabolite transport protein csbC
           OS=Bacillus subtilis GN=csbC PE=1 SV=3
          Length = 461

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -1

Query: 232 SLVVQLSFPTLASSITIPWLAMDFSHKLLLSF 137
           +L+V L FP + S++ I W+ M FS   LLSF
Sbjct: 388 NLIVSLVFPLMLSAMGIAWVFMVFSVICLLSF 419
tr_hit_id A9T8X3
Definition tr|A9T8X3|A9T8X3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 62
Score (bit) 33.5
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920556|Adiantum capillus-veneris mRNA, clone:
YMU001_000138_E07.
         (418 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9T8X3|A9T8X3_PHYPA Predicted protein OS=Physcomitrella paten...    33   5.4  
tr|Q9PE08|Q9PE08_XYLFA Colicin V secretion ABC transporter ATP-b...    33   9.2  
tr|Q87E28|Q87E28_XYLFT Colicin V secretion ABC transporter ATP-b...    33   9.2  
tr|Q5H1Y9|Q5H1Y9_XANOR Colicin V secretion ABC transporter ATP-b...    33   9.2  
tr|Q2P4U1|Q2P4U1_XANOM Colicin V secretion ABC transporter ATP-b...    33   9.2  
tr|B2SSR7|B2SSR7_XANOP Colicin V secretion/processing ATP-bindin...    33   9.2  
tr|B2I8N0|B2I8N0_XYLF2 ABC transporter related OS=Xylella fastid...    33   9.2  
tr|B0U5Q9|B0U5Q9_XYLFM Colicin V secretion ABC transporter ATP-b...    33   9.2  
tr|Q3RCG4|Q3RCG4_XYLFA ABC transporter, transmembrane region:ABC...    33   9.2  
tr|Q3R311|Q3R311_XYLFA ABC transporter, transmembrane region:ABC...    33   9.2  
tr|A5JEL1|A5JEL1_9MICR Putative uncharacterized protein OS=Nosem...    33   9.2  

>tr|A9T8X3|A9T8X3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_89627 PE=4 SV=1
          Length = 566

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = +3

Query: 45  INKVLSPSKQELNTVETRGSLGENLRFST*LKLKRSLCEKSIASQGIVIEEAKVGKDSCT 224
           ++ + SP+ + L+ ++T             L L++SLCEKS  + G+ +   KV  DS T
Sbjct: 127 LDTIYSPTHEILHPMQT-------------LLLEKSLCEKSAQTNGVAVSSTKVTPDSNT 173

Query: 225 TR 230
            R
Sbjct: 174 PR 175


>tr|Q9PE08|Q9PE08_XYLFA Colicin V secretion ABC transporter
           ATP-binding protein OS=Xylella fastidiosa GN=XF_1220
           PE=3 SV=1
          Length = 707

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = -1

Query: 283 VTIEVNISVALV*MVLFSLVVQLSFPTLASSITIPWLAMDFSHKLLLSFNYVEKRRFSPR 104
           V + +   + L+  +   L    S   L+S + + W+   F+H L L   Y EKR     
Sbjct: 194 VVLGLGFGLVLLLQIAIGLFRSWSVIYLSSRLGLQWMGNVFAHLLKLPLEYFEKRHLGDL 253

Query: 103 LPRVSTVLS 77
             R+S+V S
Sbjct: 254 TSRMSSVQS 262


>tr|Q87E28|Q87E28_XYLFT Colicin V secretion ABC transporter
           ATP-binding protein OS=Xylella fastidiosa (strain
           Temecula1 / ATCC 700964) GN=cvaB PE=3 SV=1
          Length = 707

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = -1

Query: 283 VTIEVNISVALV*MVLFSLVVQLSFPTLASSITIPWLAMDFSHKLLLSFNYVEKRRFSPR 104
           V + +   + L+  +   L    S   L+S + + W+   F+H L L   Y EKR     
Sbjct: 194 VVLGLGFGLVLLLQIAIGLFRSWSVIYLSSRLGLQWMGNVFAHLLKLPLEYFEKRHLGDL 253

Query: 103 LPRVSTVLS 77
             R+S+V S
Sbjct: 254 TSRMSSVQS 262


>tr|Q5H1Y9|Q5H1Y9_XANOR Colicin V secretion ABC transporter
           ATP-binding protein OS=Xanthomonas oryzae pv. oryzae
           GN=XOO1778 PE=3 SV=1
          Length = 704

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 19/67 (28%), Positives = 34/67 (50%)
 Frame = -1

Query: 283 VTIEVNISVALV*MVLFSLVVQLSFPTLASSITIPWLAMDFSHKLLLSFNYVEKRRFSPR 104
           V + +   +AL+  V   L+   S  +L+S + + W+   F+H L L  ++ EKR     
Sbjct: 194 VVLGLGFGLALLLQVGIGLLRGWSVVSLSSRLGLQWMGNVFAHLLKLPLDFFEKRHLGDV 253

Query: 103 LPRVSTV 83
             R+S+V
Sbjct: 254 TSRMSSV 260


>tr|Q2P4U1|Q2P4U1_XANOM Colicin V secretion ABC transporter
           ATP-binding protein OS=Xanthomonas oryzae pv. oryzae
           (strain MAFF 311018) GN=XOO1681 PE=3 SV=1
          Length = 704

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 19/67 (28%), Positives = 34/67 (50%)
 Frame = -1

Query: 283 VTIEVNISVALV*MVLFSLVVQLSFPTLASSITIPWLAMDFSHKLLLSFNYVEKRRFSPR 104
           V + +   +AL+  V   L+   S  +L+S + + W+   F+H L L  ++ EKR     
Sbjct: 194 VVLGLGFGLALLLQVGIGLLRGWSVVSLSSRLGLQWMGNVFAHLLKLPLDFFEKRHLGDV 253

Query: 103 LPRVSTV 83
             R+S+V
Sbjct: 254 TSRMSSV 260


>tr|B2SSR7|B2SSR7_XANOP Colicin V secretion/processing ATP-binding
           protein CvaB OS=Xanthomonas oryzae pv. oryzae (strain
           PXO99A) GN=cvaB PE=4 SV=1
          Length = 704

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 19/67 (28%), Positives = 34/67 (50%)
 Frame = -1

Query: 283 VTIEVNISVALV*MVLFSLVVQLSFPTLASSITIPWLAMDFSHKLLLSFNYVEKRRFSPR 104
           V + +   +AL+  V   L+   S  +L+S + + W+   F+H L L  ++ EKR     
Sbjct: 194 VVLGLGFGLALLLQVGIGLLRGWSVVSLSSRLGLQWMGNVFAHLLKLPLDFFEKRHLGDV 253

Query: 103 LPRVSTV 83
             R+S+V
Sbjct: 254 TSRMSSV 260


>tr|B2I8N0|B2I8N0_XYLF2 ABC transporter related OS=Xylella
           fastidiosa (strain M23) GN=XfasM23_0494 PE=4 SV=1
          Length = 707

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = -1

Query: 283 VTIEVNISVALV*MVLFSLVVQLSFPTLASSITIPWLAMDFSHKLLLSFNYVEKRRFSPR 104
           V + +   + L+  +   L    S   L+S + + W+   F+H L L   Y EKR     
Sbjct: 194 VVLGLGFGLVLLLQIAIGLFRSWSVIYLSSRLGLQWMGNVFAHLLKLPLEYFEKRHLGDL 253

Query: 103 LPRVSTVLS 77
             R+S+V S
Sbjct: 254 TSRMSSVQS 262


>tr|B0U5Q9|B0U5Q9_XYLFM Colicin V secretion ABC transporter
           ATP-binding protein OS=Xylella fastidiosa (strain M12)
           GN=Xfasm12_0558 PE=3 SV=1
          Length = 707

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = -1

Query: 283 VTIEVNISVALV*MVLFSLVVQLSFPTLASSITIPWLAMDFSHKLLLSFNYVEKRRFSPR 104
           V + +   + L+  +   L    S   L+S + + W+   F+H L L   Y EKR     
Sbjct: 194 VVLGLGFGLVLLLQIAIGLFRSWSVIYLSSRLGLQWMGNVFAHLLKLPLEYFEKRHLGDL 253

Query: 103 LPRVSTVLS 77
             R+S+V S
Sbjct: 254 TSRMSSVQS 262


>tr|Q3RCG4|Q3RCG4_XYLFA ABC transporter, transmembrane region:ABC
           transporter:Peptidase C39, bacteriocin processing
           OS=Xylella fastidiosa Dixon GN=XfasaDRAFT_0253 PE=3 SV=1
          Length = 707

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = -1

Query: 283 VTIEVNISVALV*MVLFSLVVQLSFPTLASSITIPWLAMDFSHKLLLSFNYVEKRRFSPR 104
           V + +   + L+  +   L    S   L+S + + W+   F+H L L   Y EKR     
Sbjct: 194 VVLGLGFGLVLLLQIAIGLFRSWSVIYLSSRLGLQWMGNVFAHLLKLPLEYFEKRHLGDL 253

Query: 103 LPRVSTVLS 77
             R+S+V S
Sbjct: 254 TSRMSSVQS 262


>tr|Q3R311|Q3R311_XYLFA ABC transporter, transmembrane region:ABC
           transporter:Peptidase C39, bacteriocin processing
           OS=Xylella fastidiosa Ann-1 GN=XfasoDRAFT_0950 PE=3 SV=1
          Length = 707

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = -1

Query: 283 VTIEVNISVALV*MVLFSLVVQLSFPTLASSITIPWLAMDFSHKLLLSFNYVEKRRFSPR 104
           V + +   + L+  +   L    S   L+S + + W+   F+H L L   Y EKR     
Sbjct: 194 VVLGLGFGLVLLLQIAIGLFRSWSVIYLSSRLGLQWMGNVFAHLLKLPLEYFEKRHLGDL 253

Query: 103 LPRVSTVLS 77
             R+S+V S
Sbjct: 254 TSRMSSVQS 262