NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920557
Clone id YMU001_000138_E08
Library
Length 485
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000138_E08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CGGATAATGCAGAGTTTGCCGCCGAGAGGAAGCAAAGCGGCAGCCTCAACATCCTTAGAA
TTTCCTAAATGAACTTTGCTGTCAACAGATGGGTACCATGACTCACTTAGATCATCGTAA
ACAGCGGAGCTTACAACCATCAGGGTCAATCAAGAGCATAGAGCTGCCCGTGAAGTGACA
TGCTTGGATTATGCCAACCGGACACAAGGCCATCACCAGCAAGCGCCCATGAGCTACATC
TGCGTGTGTTGCTCATGAGGGGGCGCATGTGTCGTTCTGGCATGAGTTGCTCATGATGGG
GGCAGACGCATGGTTGGTGGCGTCAATCTGCCATACAAAGACTTCAATGAGCTGCTGCTA
GCGTTTATCTGCTTGTGACAAAAATTCGTGGCAAGCTGCTGCCGTTCTGAACAGCACTCC
AATAGAGAATGTAGTCTATCTCCTAGGCTTTGCCAGGCGTGCTGCGCAAGTGAGGGTTTC
TTGTT
■■Homology search results ■■ -
sp_hit_id Q93W93
Definition sp|Q93W93|FBK22_ARATH F-box/Kelch-repeat protein At1g55270 OS=Arabidopsis thaliana
Align length 40
Score (bit) 55.8
E-value 3.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920557|Adiantum capillus-veneris mRNA, clone:
YMU001_000138_E08.
         (485 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q93W93|FBK22_ARATH F-box/Kelch-repeat protein At1g55270 OS=Ar...    56   3e-14
sp|Q4JK59|TET2_MOUSE Protein TET2 OS=Mus musculus GN=Tet2 PE=2 SV=2    33   0.88 
sp|Q7NX86|SYQ_CHRVO Glutaminyl-tRNA synthetase OS=Chromobacteriu...    30   7.5  
sp|Q4U2V3|CBPC1_DANRE Cytosolic carboxypeptidase 1 OS=Danio reri...    30   7.5  

>sp|Q93W93|FBK22_ARATH F-box/Kelch-repeat protein At1g55270
           OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1
          Length = 434

 Score = 55.8 bits (133), Expect(2) = 3e-14
 Identities = 25/40 (62%), Positives = 32/40 (80%)
 Frame = -1

Query: 122 VYDDLSESWYPSVDSKVHLGNSKDVEAAALLPLGGKLCII 3
           V+D+ ++SW   +DSK HLGNSK +EAAAL+PL  KLCII
Sbjct: 336 VFDESTDSWNKFMDSKAHLGNSKSLEAAALVPLHNKLCII 375



 Score = 42.4 bits (98), Expect(2) = 3e-14
 Identities = 16/29 (55%), Positives = 22/29 (75%)
 Frame = -2

Query: 235 SSWALAGDGLVSGWHNPSMSLHGQLYALD 149
           +SW+   DG+V+GW NP  SL+G+LY LD
Sbjct: 299 NSWSPVSDGMVAGWRNPCTSLNGRLYGLD 327


>sp|Q4JK59|TET2_MOUSE Protein TET2 OS=Mus musculus GN=Tet2 PE=2 SV=2
          Length = 1912

 Score = 32.7 bits (73), Expect = 0.88
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
 Frame = -1

Query: 482  KKPSLAQHAWQSLGDRLHSLLECCSERQQLATNFCHKQINASSSSLKSLYGR--LTPPTM 309
            KK +  + A      R  S LE CS R +   +  H ++  ++S +K +  +  L+ P +
Sbjct: 1379 KKKAEPKKAKTKKAARKRSSLENCSSRTEKGKSSSHTKLMENASHMKQMTAQPQLSGPVI 1438

Query: 308  RLPPS*ATHARTTHAPPHEQHTQ 240
            R PP+   H +    P   Q  Q
Sbjct: 1439 RQPPTLQRHLQQGQRPQQPQPPQ 1461


>sp|Q7NX86|SYQ_CHRVO Glutaminyl-tRNA synthetase OS=Chromobacterium
           violaceum GN=glnS PE=3 SV=1
          Length = 560

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 298 HHEQLMPERHMRPLMSNTRRCSSWALAGDGLVSGWHNPSM 179
           HH Q +    +  L + T +    AL  DG V+GW +P M
Sbjct: 254 HHPQQIEFSRLELLYALTSKRKLQALVNDGAVTGWDDPRM 293


>sp|Q4U2V3|CBPC1_DANRE Cytosolic carboxypeptidase 1 OS=Danio rerio
            GN=agtpbp1 PE=2 SV=1
          Length = 1153

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 289  QLMPERHMRPLMSNTRRCSSWALAGDGLVSGWHNPSMSLHGQLY 158
            ++MP  +   +++   RCS   L+G+ L   W NP+  LH  +Y
Sbjct: 879  KIMPMLNPDGVINGNHRCS---LSGEDLNRQWQNPNAELHPTIY 919
tr_hit_id A7PF14
Definition tr|A7PF14|A7PF14_VITVI Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera
Align length 40
Score (bit) 61.2
E-value 2.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920557|Adiantum capillus-veneris mRNA, clone:
YMU001_000138_E08.
         (485 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PF14|A7PF14_VITVI Chromosome chr11 scaffold_13, whole genom...    61   2e-15
tr|A5BHH2|A5BHH2_VITVI Putative uncharacterized protein OS=Vitis...    61   2e-15
tr|A5C9A3|A5C9A3_VITVI Putative uncharacterized protein (Chromos...    56   1e-14
tr|A5BUP5|A5BUP5_VITVI Putative uncharacterized protein OS=Vitis...    54   2e-11
tr|B6U1Z3|B6U1Z3_MAIZE Kelch motif family protein OS=Zea mays PE...    48   2e-09
tr|A3AEI2|A3AEI2_ORYSJ Putative uncharacterized protein OS=Oryza...    48   7e-09
tr|Q8S7U1|Q8S7U1_ORYSJ Putative Kelch motif containing protein O...    48   7e-09
tr|Q10R89|Q10R89_ORYSJ Os03g0167800 protein OS=Oryza sativa subs...    48   7e-09
tr|B8APA1|B8APA1_ORYSI Putative uncharacterized protein OS=Oryza...    48   7e-09
tr|A0SHJ8|A0SHJ8_ORYRU Kelch-motif containing protein (Fragment)...    47   9e-09
tr|A0SHJ5|A0SHJ5_ORYRU Kelch-motif containing protein (Fragment)...    47   9e-09
tr|A0SHJ3|A0SHJ3_ORYSI Kelch-motif containing protein (Fragment)...    47   9e-09
tr|A0SHH8|A0SHH8_9ORYZ Kelch-motif containing protein (Fragment)...    47   1e-08
tr|A0SHH7|A0SHH7_9ORYZ Kelch-motif containing protein (Fragment)...    47   1e-08
tr|Q7XES2|Q7XES2_ORYSJ Os10g0409900 protein OS=Oryza sativa subs...    47   1e-08
tr|B8BGS5|B8BGS5_ORYSI Putative uncharacterized protein OS=Oryza...    47   1e-08
tr|A3C4N2|A3C4N2_ORYSJ Putative uncharacterized protein OS=Oryza...    47   1e-08
tr|A0SHK4|A0SHK4_ORYRU Kelch-motif containing protein (Fragment)...    47   1e-08
tr|A0SHK1|A0SHK1_ORYRU Kelch-motif containing protein (Fragment)...    47   1e-08
tr|A0SHJ6|A0SHJ6_ORYRU Kelch-motif containing protein (Fragment)...    47   1e-08
tr|A0SHJ4|A0SHJ4_ORYSI Kelch-motif containing protein (Fragment)...    47   1e-08
tr|A0SHJ2|A0SHJ2_ORYSI Kelch-motif containing protein (Fragment)...    47   1e-08
tr|A0SHJ1|A0SHJ1_ORYSI Kelch-motif containing protein (Fragment)...    47   1e-08
tr|A0SHJ0|A0SHJ0_ORYSJ Kelch-motif containing protein (Fragment)...    47   1e-08
tr|A0SHI9|A0SHI9_ORYSJ Kelch-motif containing protein (Fragment)...    47   1e-08
tr|A0SHI8|A0SHI8_ORYSJ Kelch-motif containing protein (Fragment)...    47   1e-08
tr|A0SHI7|A0SHI7_ORYSJ Kelch-motif containing protein (Fragment)...    47   1e-08
tr|A0SHI5|A0SHI5_ORYNI Kelch-motif containing protein (Fragment)...    47   1e-08
tr|A0SHI3|A0SHI3_9ORYZ Kelch-motif containing protein (Fragment)...    47   1e-08
tr|A0SHI1|A0SHI1_ORYLO Kelch-motif containing protein (Fragment)...    47   1e-08

>tr|A7PF14|A7PF14_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016869001
           PE=4 SV=1
          Length = 428

 Score = 61.2 bits (147), Expect(2) = 2e-15
 Identities = 27/40 (67%), Positives = 35/40 (87%)
 Frame = -1

Query: 122 VYDDLSESWYPSVDSKVHLGNSKDVEAAALLPLGGKLCII 3
           VYD++S+SW   +DSK+HLGNS+ +EAAAL+PL GKLCII
Sbjct: 325 VYDEVSDSWSKHIDSKMHLGNSQALEAAALVPLHGKLCII 364



 Score = 44.7 bits (104), Expect(2) = 2e-15
 Identities = 19/28 (67%), Positives = 22/28 (78%)
 Frame = -2

Query: 232 SWALAGDGLVSGWHNPSMSLHGQLYALD 149
           SW    DG+V+GW NPS SL+GQLYALD
Sbjct: 289 SWYPVYDGMVAGWRNPSASLNGQLYALD 316


>tr|A5BHH2|A5BHH2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_011673 PE=4 SV=1
          Length = 428

 Score = 61.2 bits (147), Expect(2) = 2e-15
 Identities = 27/40 (67%), Positives = 35/40 (87%)
 Frame = -1

Query: 122 VYDDLSESWYPSVDSKVHLGNSKDVEAAALLPLGGKLCII 3
           VYD++S+SW   +DSK+HLGNS+ +EAAAL+PL GKLCII
Sbjct: 325 VYDEVSDSWSKHIDSKMHLGNSQALEAAALVPLHGKLCII 364



 Score = 44.7 bits (104), Expect(2) = 2e-15
 Identities = 19/28 (67%), Positives = 22/28 (78%)
 Frame = -2

Query: 232 SWALAGDGLVSGWHNPSMSLHGQLYALD 149
           SW    DG+V+GW NPS SL+GQLYALD
Sbjct: 289 SWYPVYDGMVAGWRNPSASLNGQLYALD 316


>tr|A5C9A3|A5C9A3_VITVI Putative uncharacterized protein (Chromosome
           chr6 scaffold_3, whole genome shotgun sequence) OS=Vitis
           vinifera GN=GSVIVT00024761001 PE=4 SV=1
          Length = 437

 Score = 56.2 bits (134), Expect(2) = 1e-14
 Identities = 25/40 (62%), Positives = 33/40 (82%)
 Frame = -1

Query: 122 VYDDLSESWYPSVDSKVHLGNSKDVEAAALLPLGGKLCII 3
           VYD  ++SW   +DSK+HLG+S+ +EAAAL+PL GKLCII
Sbjct: 335 VYDSDTDSWNKFIDSKLHLGSSRALEAAALVPLNGKLCII 374



 Score = 46.6 bits (109), Expect(2) = 1e-14
 Identities = 21/49 (42%), Positives = 31/49 (63%)
 Frame = -2

Query: 295 HEQLMPERHMRPLMSNTRRCSSWALAGDGLVSGWHNPSMSLHGQLYALD 149
           H ++M E ++          ++W    DG+V+GW NPS+SL+GQLYALD
Sbjct: 285 HREVMSEAYIP-------ETNTWTPISDGMVAGWRNPSISLNGQLYALD 326


>tr|A5BUP5|A5BUP5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_029619 PE=4 SV=1
          Length = 116

 Score = 54.3 bits (129), Expect(2) = 2e-11
 Identities = 24/40 (60%), Positives = 32/40 (80%)
 Frame = -1

Query: 122 VYDDLSESWYPSVDSKVHLGNSKDVEAAALLPLGGKLCII 3
           VYD  ++SW   +DSK+HLG+S+ +E AAL+PL GKLCII
Sbjct: 29  VYDSDTDSWNKFIDSKLHLGSSRVLEVAALVPLNGKLCII 68



 Score = 38.1 bits (87), Expect(2) = 2e-11
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = -2

Query: 208 LVSGWHNPSMSLHGQLYALD 149
           +V+GW NPS+SL+GQLYALD
Sbjct: 1   MVAGWRNPSISLNGQLYALD 20


>tr|B6U1Z3|B6U1Z3_MAIZE Kelch motif family protein OS=Zea mays PE=2
           SV=1
          Length = 437

 Score = 47.8 bits (112), Expect(2) = 2e-09
 Identities = 22/40 (55%), Positives = 30/40 (75%)
 Frame = -1

Query: 122 VYDDLSESWYPSVDSKVHLGNSKDVEAAALLPLGGKLCII 3
           VYD+ + +W   +DSK HLG+S+  EAAAL+ L GKLC+I
Sbjct: 335 VYDENTGTWTRFMDSKHHLGSSRAFEAAALVSLNGKLCVI 374



 Score = 37.7 bits (86), Expect(2) = 2e-09
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = -2

Query: 235 SSWALAGDGLVSGWHNPSMSLHGQLYALD 149
           ++W+   D +V+GW NPS+S +G+LY+ D
Sbjct: 298 NTWSAIDDEMVTGWRNPSISFNGRLYSAD 326


>tr|A3AEI2|A3AEI2_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_009204 PE=4 SV=1
          Length = 502

 Score = 48.1 bits (113), Expect(2) = 7e-09
 Identities = 23/40 (57%), Positives = 29/40 (72%)
 Frame = -1

Query: 122 VYDDLSESWYPSVDSKVHLGNSKDVEAAALLPLGGKLCII 3
           VYD  + SW   +DS+ HLGNS+  EAAAL+ L GK+CII
Sbjct: 400 VYDRDTRSWTRFMDSRRHLGNSRAFEAAALVSLNGKICII 439



 Score = 35.4 bits (80), Expect(2) = 7e-09
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = -2

Query: 295 HEQLMPERHMRPLMSNTRRCSSWALAGDGLVSGWHNPSMSLHGQLYALD 149
           H Q++ E +M    SN      W++  D +V+GW NPS+  +G+LY+ +
Sbjct: 350 HRQVVSEVYMPT--SNV-----WSVTADEMVTGWRNPSICFNGRLYSAE 391


>tr|Q8S7U1|Q8S7U1_ORYSJ Putative Kelch motif containing protein
           OS=Oryza sativa subsp. japonica GN=OSJNBa0091P11.35 PE=4
           SV=1
          Length = 493

 Score = 48.1 bits (113), Expect(2) = 7e-09
 Identities = 23/40 (57%), Positives = 29/40 (72%)
 Frame = -1

Query: 122 VYDDLSESWYPSVDSKVHLGNSKDVEAAALLPLGGKLCII 3
           VYD  + SW   +DS+ HLGNS+  EAAAL+ L GK+CII
Sbjct: 391 VYDRDTRSWTRFMDSRRHLGNSRAFEAAALVSLNGKICII 430



 Score = 35.4 bits (80), Expect(2) = 7e-09
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = -2

Query: 295 HEQLMPERHMRPLMSNTRRCSSWALAGDGLVSGWHNPSMSLHGQLYALD 149
           H Q++ E +M    SN      W++  D +V+GW NPS+  +G+LY+ +
Sbjct: 341 HRQVVSEVYMPT--SNV-----WSVTADEMVTGWRNPSICFNGRLYSAE 382


>tr|Q10R89|Q10R89_ORYSJ Os03g0167800 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0167800 PE=2 SV=1
          Length = 438

 Score = 48.1 bits (113), Expect(2) = 7e-09
 Identities = 23/40 (57%), Positives = 29/40 (72%)
 Frame = -1

Query: 122 VYDDLSESWYPSVDSKVHLGNSKDVEAAALLPLGGKLCII 3
           VYD  + SW   +DS+ HLGNS+  EAAAL+ L GK+CII
Sbjct: 336 VYDRDTRSWTRFMDSRRHLGNSRAFEAAALVSLNGKICII 375



 Score = 35.4 bits (80), Expect(2) = 7e-09
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = -2

Query: 295 HEQLMPERHMRPLMSNTRRCSSWALAGDGLVSGWHNPSMSLHGQLYALD 149
           H Q++ E +M    SN      W++  D +V+GW NPS+  +G+LY+ +
Sbjct: 286 HRQVVSEVYMPT--SNV-----WSVTADEMVTGWRNPSICFNGRLYSAE 327


>tr|B8APA1|B8APA1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_10170 PE=4 SV=1
          Length = 438

 Score = 48.1 bits (113), Expect(2) = 7e-09
 Identities = 23/40 (57%), Positives = 29/40 (72%)
 Frame = -1

Query: 122 VYDDLSESWYPSVDSKVHLGNSKDVEAAALLPLGGKLCII 3
           VYD  + SW   +DS+ HLGNS+  EAAAL+ L GK+CII
Sbjct: 336 VYDRDTRSWTRFMDSRRHLGNSRAFEAAALVSLNGKICII 375



 Score = 35.4 bits (80), Expect(2) = 7e-09
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = -2

Query: 295 HEQLMPERHMRPLMSNTRRCSSWALAGDGLVSGWHNPSMSLHGQLYALD 149
           H Q++ E +M    SN      W++  D +V+GW NPS+  +G+LY+ +
Sbjct: 286 HRQVVSEVYMPT--SNV-----WSVTADEMVTGWRNPSICFNGRLYSAE 327


>tr|A0SHJ8|A0SHJ8_ORYRU Kelch-motif containing protein (Fragment)
           OS=Oryza rufipogon PE=4 SV=1
          Length = 375

 Score = 47.0 bits (110), Expect(2) = 9e-09
 Identities = 22/40 (55%), Positives = 29/40 (72%)
 Frame = -1

Query: 122 VYDDLSESWYPSVDSKVHLGNSKDVEAAALLPLGGKLCII 3
           VYD  + +W   +DSK HLG+S+  EAAAL+ L GKLCI+
Sbjct: 289 VYDPNTGTWAKFMDSKHHLGSSRAFEAAALVTLNGKLCIV 328



 Score = 36.2 bits (82), Expect(2) = 9e-09
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = -2

Query: 265 RPLMSNTRRCSS--WALAGDGLVSGWHNPSMSLHGQLYALD 149
           R +MS     SS  W+   D +V+GW NPS++ +G+LY+ D
Sbjct: 240 RQVMSEVYLPSSNLWSTIDDEMVTGWRNPSITFNGKLYSSD 280