BP920561 |
Clone id |
YMU001_000138_E12 |
Library |
YMU01 |
Length |
457 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000138_E12. |
Accession |
BP920561 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL6Contig1 |
Sequence |
CGAGCAGGTGACGGTAGGAGCAAGGAGGATCAAGAAGAAGAAAGAGAAGAAGAAGCCATG GCTGCCGTCTCTGCTTCTACTCTCTCCGCCTCGGTGGCGGCAACTGCCCCCGCTGCTTCC CTGAAGTCGGAATTCTCTGGCGTTCAGGTGCAGGGCATCCCCTCCCTCTCTCCTAAGCTA TCCGCCCGCTCCCTCAGAATCGAGGCAAGTGGTGTCAAGAAGATCTCGACCAAAACTCCC TTGGGACCTTCCGGCGATACCAAATTCAAGGGTAACCTGGATGCCTCTGGTCGCAAAGCT AAGGGAAAGGGAGTCTACCAATATACCAAGAAGTATGGTGCTAATGTCGATGGATACAGC CCTATCTATGTCCCAGAGGAATGGTCAACTTCTGGTGATAGCTATGCTGCAGGTCCTACT GGATTGGCTATCTGGGCAGTTACCCTCGGCGCTATCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q40163 |
Definition |
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum |
Align length |
102 |
Score (bit) |
126.0 |
E-value |
4.0e-29 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920561|Adiantum capillus-veneris mRNA, clone: YMU001_000138_E12. (457 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl... 126 4e-29 sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl... 126 5e-29 sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl... 125 7e-29 sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl... 124 3e-28 sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl... 122 6e-28 sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl... 122 1e-27 sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl... 119 5e-27 sp|B2MW49|L_LATVB RNA-directed RNA polymerase OS=Latino virus (i... 31 2.3 sp|Q49ZE9|RL15_STAS1 50S ribosomal protein L15 OS=Staphylococcus... 30 5.0 sp|Q6UBI3|PERQ_SUASA Peroxiredoxin Q, chloroplastic OS=Suaeda sa... 30 5.0 sp|Q9Z1J1|TF7L1_MOUSE Transcription factor 7-like 1 OS=Mus muscu... 30 6.4 sp|Q92585|MAML1_HUMAN Mastermind-like protein 1 OS=Homo sapiens ... 30 6.4 sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal tr... 30 6.6 sp|Q9WU01|KHDR2_MOUSE KH domain-containing, RNA-binding, signal ... 30 6.6 sp|A9F8Z2|PNP_SORC5 Polyribonucleotide nucleotidyltransferase OS... 29 8.6
>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1 Length = 138
Score = 126 bits (317), Expect = 4e-29 Identities = 62/102 (60%), Positives = 74/102 (72%) Frame = +1
Query: 142 VQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQ 321 + V+G+PSL+ S+ S ++ ASGVKK+ T P G +G + +DASGRK KGKGVYQ Sbjct: 20 ISVKGLPSLTR--SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQ 77
Query: 322 YTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTL 447 Y KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVTL Sbjct: 78 YVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTL 119
>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1 Length = 136
Score = 126 bits (316), Expect = 5e-29 Identities = 62/103 (60%), Positives = 75/103 (72%) Frame = +1
Query: 148 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYT 327 V+G+PSL+ S+ S R++ASGVKK+ T P G +G + +DASGRK KGKGVYQ+ Sbjct: 20 VKGLPSLAR--SSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFV 77
Query: 328 KKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTLGAI 456 KYGANVDGYSPIY ++WS SGD Y G TGLAIWAVTL I Sbjct: 78 DKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGI 120
>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1 Length = 138
Score = 125 bits (315), Expect = 7e-29 Identities = 63/103 (61%), Positives = 74/103 (71%) Frame = +1
Query: 148 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYT 327 V+G+PSL+ S+ S ++ ASGVKK+ T P G +G + +DASGRK KGKGVYQY Sbjct: 22 VKGLPSLAR--SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYV 79
Query: 328 KKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTLGAI 456 KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVTL I Sbjct: 80 DKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGI 122
>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1 Length = 141
Score = 124 bits (310), Expect = 3e-28 Identities = 62/105 (59%), Positives = 73/105 (69%) Frame = +1
Query: 142 VQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQ 321 + +G+PSL+ + S S RI ASGVKKI T P G +G + +DASGRK KG GVY+ Sbjct: 22 MSARGLPSLT-RASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYK 80
Query: 322 YTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTLGAI 456 + KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVTL I Sbjct: 81 FVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGI 125
>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1 Length = 140
Score = 122 bits (307), Expect = 6e-28 Identities = 61/103 (59%), Positives = 72/103 (69%) Frame = +1
Query: 148 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYT 327 V+G+PSLS S+ S + ASGVKKI PLG G K + +D+SGRK GKGVYQ+ Sbjct: 24 VKGLPSLSR--SSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFV 81
Query: 328 KKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTLGAI 456 KYGANVDGYSPIY EEW+ +GD YA G TGL IWAVTL + Sbjct: 82 DKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGL 124
>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1 Length = 138
Score = 122 bits (305), Expect = 1e-27 Identities = 64/111 (57%), Positives = 71/111 (63%) Frame = +1
Query: 124 KSEFSGVQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAK 303 +S+ GV+ PS P SL I A KK+ T P GP G FK +DASGR AK Sbjct: 21 RSKLGGVR----PSARP-----SLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAK 71
Query: 304 GKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTLGAI 456 GKGVYQ+ KYGANVDGYSPIY PEEWS SGD Y G TGL +WAVTL I Sbjct: 72 GKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGI 122
>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1 Length = 140
Score = 119 bits (299), Expect = 5e-27 Identities = 61/102 (59%), Positives = 70/102 (68%) Frame = +1
Query: 151 QGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTK 330 +G+PSL+ + S +I ASGVKKI T P G +G + +DASGRK KG GVY+Y Sbjct: 25 RGLPSLTR--ARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVD 82
Query: 331 KYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTLGAI 456 KYGANVDGYSPIY EWS SGD Y G TGLAIWAVTL I Sbjct: 83 KYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGI 124
>sp|B2MW49|L_LATVB RNA-directed RNA polymerase OS=Latino virus (isolate Rat/Bolivia/MARU 1924/1965) GN=L PE=3 SV=1 Length = 2238
Score = 31.2 bits (69), Expect = 2.3 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%) Frame = +1
Query: 142 VQVQGIPSLSPKLSARSLRIEASGVKKIST----KTPLGPSGDTKFKGNLDASGRKA--K 303 ++ + IPSL + ++ + G KKI K+ S + F G + G K Sbjct: 1591 IETEEIPSLIKSIQSKLSKNFVKGAKKILAESINKSAFQSSIASGFIGFCQSVGSKCVRT 1650
Query: 304 GKGVYQYTKKYGANVDGYSPIYVPEEW 384 G+G + Y K+ + VD Y P V W Sbjct: 1651 GEGGFYYIKELKSKVDLYCPCEVCARW 1677
>sp|Q49ZE9|RL15_STAS1 50S ribosomal protein L15 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rplO PE=3 SV=1 Length = 146
Score = 30.0 bits (66), Expect = 5.0 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +1
Query: 124 KSEFSGVQVQGIPSLSPKLSARSLRIEASGVKKISTK 234 KSE SG+++ G SL KL+ ++ + AS + I K Sbjct: 103 KSEKSGIKILGTGSLDKKLTVKASKFSASAAEAIDAK 139
>sp|Q6UBI3|PERQ_SUASA Peroxiredoxin Q, chloroplastic OS=Suaeda salsa GN=PRXQ PE=1 SV=1 Length = 214
Score = 30.0 bits (66), Expect = 5.0 Identities = 24/66 (36%), Positives = 35/66 (53%) Frame = +1
Query: 127 SEFSGVQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKG 306 S+F G+++ SLSP L RS + AS V K+S + + P+ K + + S K KG Sbjct: 37 SQFCGIKLSHSSSLSPPLYPRSYK--ASIVAKVS-EGSMPPAFTLKDQDGKNVSLSKFKG 93
Query: 307 KGVYQY 324 K V Y Sbjct: 94 KPVVVY 99
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S7M9 |
Definition |
tr|A9S7M9|A9S7M9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
111 |
Score (bit) |
138.0 |
E-value |
2.0e-31 |
Report |
|