BP920564 |
Clone id |
YMU001_000138_F03 |
Library |
YMU01 |
Length |
489 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000138_F03. |
Accession |
BP920564 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL889Contig1 |
Sequence |
GCGATGGCAGCTTCTGCGAAGCCTCTGCTTCTGCTCGCCCTGCTCTGCGTATCAGCCTAC ACTACCATTGCCGATAATTGCGTCTACACATTCTTCATCAAAACTGGAACAAGGATCAGT GGCGGCACAAATTCGGTGATTAGCGCGACCCTCTTCGACTCTACCGGCGACAGCGTGCAG ATCAGCGACATTGAAACATGGGGAGGATTGATGGGCACAGACTACGACTACTTTGAGAGA GGCAATGTTGACATATTTAGCGGGCTCGGAACGTGCACAAGTGCAGGCACCATATGTGCT CTCAATTTGACAAGTGATGGGTCTGGCTCACATCCTGGCTGGTATGTGAATTATGCAGAG GTCACCATCACAGGGGCTAACCTTGGATGCACCAATGTGGACTTTGAGATTGAGCAGTGG ATTGCCGATGATGCTTACCCTTACGAGCTCTATGCGTACCGGGACTCTTGCTCCTCCTCC TCCTCAGCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8IVV2 |
Definition |
sp|Q8IVV2|LOXH1_HUMAN Lipoxygenase homology domain-containing protein 1 OS=Homo sapiens |
Align length |
93 |
Score (bit) |
50.1 |
E-value |
6.0e-06 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920564|Adiantum capillus-veneris mRNA, clone: YMU001_000138_F03. (489 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q8IVV2|LOXH1_HUMAN Lipoxygenase homology domain-containing pr... 50 6e-06 sp|Q7TN88|PK1L2_MOUSE Polycystic kidney disease protein 1-like 2... 49 9e-06 sp|Q7Z443|PK1L3_HUMAN Polycystic kidney disease protein 1-like 3... 47 5e-05 sp|Q7Z442|PK1L2_HUMAN Polycystic kidney disease protein 1-like 2... 44 5e-04 sp|Q2EG98|PK1L3_MOUSE Polycystic kidney disease protein 1-like 3... 42 0.001 sp|O16025|AOSL_PLEHO Allene oxide synthase-lipoxygenase protein ... 34 0.31 sp|Q5RDD2|PR38A_PONAB Pre-mRNA-splicing factor 38A OS=Pongo abel... 32 1.5 sp|Q4FK66|PR38A_MOUSE Pre-mRNA-splicing factor 38A OS=Mus muscul... 32 1.5 sp|Q8HXH6|PR38A_MACFA Pre-mRNA-splicing factor 38A OS=Macaca fas... 32 1.5 sp|Q8NAV1|PR38A_HUMAN Pre-mRNA-splicing factor 38A OS=Homo sapie... 32 1.5 sp|Q0P5I6|PR38A_BOVIN Pre-mRNA-splicing factor 38A OS=Bos taurus... 32 1.5 sp|P01266|THYG_HUMAN Thyroglobulin OS=Homo sapiens GN=TG PE=1 SV=5 32 1.6 sp|P48999|LOX5_MOUSE Arachidonate 5-lipoxygenase OS=Mus musculus... 31 2.7 sp|P04813|CTR2_CANFA Chymotrypsinogen 2 OS=Canis familiaris GN=C... 31 2.7 sp|Q28H87|PR38A_XENTR Pre-mRNA-splicing factor 38A OS=Xenopus tr... 31 3.4 sp|Q4FZQ6|PR38A_XENLA Pre-mRNA-splicing factor 38A OS=Xenopus la... 31 3.4 sp|P00767|CTRB_BOVIN Chymotrypsinogen B OS=Bos taurus PE=1 SV=1 31 3.5 sp|Q6DHU4|PR38A_DANRE Pre-mRNA-splicing factor 38A OS=Danio reri... 30 4.5 sp|Q01SX2|EFTU_SOLUE Elongation factor Tu OS=Solibacter usitatus... 30 4.5 sp|Q9Z2P5|RIPK3_RAT Receptor-interacting serine/threonine-protei... 30 4.5 sp|Q9Y679|AUP1_HUMAN Ancient ubiquitous protein 1 OS=Homo sapien... 30 5.8 sp|Q6Y5M6|PMIP_COPDI Mitochondrial intermediate peptidase OS=Cop... 30 5.9 sp|Q12QX0|LIPB_SHEDO Octanoyltransferase OS=Shewanella denitrifi... 30 5.9 sp|Q03155|AIDA_ECOLX Adhesin AIDA-I OS=Escherichia coli GN=aidA-... 30 5.9 sp|A7DTG3|SRTD4_MOUSE SERTA domain-containing protein 4 OS=Mus m... 30 7.6 sp|Q877T5|EFTU_VIBPA Elongation factor Tu OS=Vibrio parahaemolyt... 30 7.6 sp|P01267|THYG_BOVIN Thyroglobulin OS=Bos taurus GN=TG PE=1 SV=1 30 7.8 sp|P51399|LOX5_MESAU Arachidonate 5-lipoxygenase OS=Mesocricetus... 30 7.8 sp|O02380|ALL2_TYRPU Mite group 2 allergen Tyr p 2 OS=Tyrophagus... 30 7.8
>sp|Q8IVV2|LOXH1_HUMAN Lipoxygenase homology domain-containing protein 1 OS=Homo sapiens GN=LOXHD1 PE=1 SV=2 Length = 1947
Score = 50.1 bits (118), Expect = 6e-06 Identities = 27/93 (29%), Positives = 47/93 (50%) Frame = +1
Query: 85 YTFFIKTGTRISGGTNSVISATLFDSTGDSVQISDIETWGGLMGTDYDYFERGNVDIFSG 264 YT +KT + GT++ + +F GDS ++ ++ +++ FER N D F+ Sbjct: 1609 YTVAVKTSDILGAGTDANVFIIIFGENGDSGTLALKQS------ANWNKFERNNTDTFN- 1661
Query: 265 LGTCTSAGTICALNLTSDGSGSHPGWYVNYAEV 363 S G +C L + D G PGW+++Y +V Sbjct: 1662 FPDMLSLGHLCKLRVWHDNKGIFPGWHLSYVDV 1694
Score = 46.6 bits (109), Expect = 6e-05 Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 3/117 (2%) Frame = +1
Query: 85 YTFFIKTGTRISGGTNSVISATLF---DSTGDSVQISDIETWGGLMGTDYDYFERGNVDI 255 ++ IKTG + + GT++ + TLF D TG ++ S T+ D FER +++I Sbjct: 899 FSVTIKTGVKKNAGTDANVFITLFGTQDDTGMTLLKSS--------KTNSDKFERDSIEI 950
Query: 256 FSGLGTCTSAGTICALNLTSDGSGSHPGWYVNYAEVTITGANLGCTNVDFEIEQWIA 426 F+ G + + L +D +G PGW+V++ EV T F +W+A Sbjct: 951 FT--VETLDLGDLWKVRLGNDNTGKAPGWFVDWVEVDAPSLGKCMT---FPCGRWLA 1002
Score = 40.8 bits (94), Expect = 0.003 Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 4/130 (3%) Frame = +1
Query: 76 NCVYTFFIKTGTRISGGTNSVISATLFDSTGDSVQISDIETWGGLMGTDYDYFERGNVDI 255 N Y +KTG T+S + L+ D+++ + + L DYFERG VD Sbjct: 405 NFRYHISLKTGDVSGASTDSRVYIKLYGDKSDTIKQVLLVSDNNLK----DYFERGRVDE 460
Query: 256 FSGLGTCTSAGTICALNLTSDGSGSHPGWYVNYAEVTITGANLGCTNVDFEIEQWI---- 423 F+ L T + G I L + D +G H W++ ++ + T F +W+ Sbjct: 461 FT-LET-LNIGNINRLVIGHDSTGMHVSWFLGSVQIRVPRQGKQYT---FPANRWLDKNQ 515
Query: 424 ADDAYPYELY 453 AD ELY Sbjct: 516 ADGRLEVELY 525
Score = 35.0 bits (79), Expect = 0.18 Identities = 27/97 (27%), Positives = 40/97 (41%) Frame = +1
Query: 73 DNCVYTFFIKTGTRISGGTNSVISATLFDSTGDSVQISDIETWGGLMGTDYDYFERGNVD 252 D +Y+ I TG GT++ + T++ GD+ E + G + FERG D Sbjct: 1180 DIVLYSVQIFTGNIPGAGTDAKVYITIYGDLGDTG-----ERYLGKSENRTNKFERGTAD 1234
Query: 253 IFSGLGTCTSAGTICALNLTSDGSGSHPGWYVNYAEV 363 F + G I + L D S WYV E+ Sbjct: 1235 TF--IIEAADLGVIYKIKLRHDNSKWCADWYVEKVEI 1269
Score = 30.8 bits (68), Expect = 3.5 Identities = 22/89 (24%), Positives = 36/89 (40%) Frame = +1
Query: 82 VYTFFIKTGTRISGGTNSVISATLFDSTGDSVQISDIETWGGLMGTDYDYFERGNVDIFS 261 +Y + TG + GGT+S I TL+ G + ++ + FER D F Sbjct: 1481 LYEMTVWTGDVVGGGTDSNIFMTLYGINGSTEEMQ--------LDKKKARFEREQNDTF- 1531
Query: 262 GLGTCTSAGTICALNLTSDGSGSHPGWYV 348 + + + DG GS P W++ Sbjct: 1532 -IMEILDIAPFTKMRIRIDGLGSRPEWFL 1559
>sp|Q7TN88|PK1L2_MOUSE Polycystic kidney disease protein 1-like 2 OS=Mus musculus GN=Pkd1l2 PE=2 SV=1 Length = 2461
Score = 49.3 bits (116), Expect = 9e-06 Identities = 32/89 (35%), Positives = 42/89 (47%) Frame = +1
Query: 85 YTFFIKTGTRISGGTNSVISATLFDSTGDSVQISDIETWGGLMGTDYDYFERGNVDIFSG 264 Y + TG R T+S ++ TL+ S G+S L D FERG VD+F Sbjct: 1393 YLVTVYTGHRRGAATSSKVTLTLYGSDGESEPHH-------LSDPDAAVFERGGVDVFL- 1444
Query: 265 LGTCTSAGTICALNLTSDGSGSHPGWYVN 351 L T G + +L L D SG P WYV+ Sbjct: 1445 LSTLFPLGELQSLRLWHDNSGDRPSWYVS 1473
>sp|Q7Z443|PK1L3_HUMAN Polycystic kidney disease protein 1-like 3 OS=Homo sapiens GN=PKD1L3 PE=2 SV=1 Length = 1732
Score = 47.0 bits (110), Expect = 5e-05 Identities = 36/102 (35%), Positives = 46/102 (45%), Gaps = 5/102 (4%) Frame = +1
Query: 61 TTIADNCV-----YTFFIKTGTRISGGTNSVISATLFDSTGDSVQISDIETWGGLMGTDY 225 T +ADN Y + TG R S T + + TL+ S G S L Sbjct: 732 TVLADNDPSAQFHYLIQVYTGYRRSAATTAKVVITLYGSEGRSEPHH-------LCDPQK 784
Query: 226 DYFERGNVDIFSGLGTCTSAGTICALNLTSDGSGSHPGWYVN 351 FERG +D+F L T TS G + +L L D SG P WYV+ Sbjct: 785 TVFERGGLDVFL-LTTWTSLGNLHSLRLWHDNSGVSPSWYVS 825
>sp|Q7Z442|PK1L2_HUMAN Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2 PE=1 SV=3 Length = 2459
Score = 43.5 bits (101), Expect = 5e-04 Identities = 30/89 (33%), Positives = 39/89 (43%) Frame = +1
Query: 85 YTFFIKTGTRISGGTNSVISATLFDSTGDSVQISDIETWGGLMGTDYDYFERGNVDIFSG 264 Y + TG R T+S ++ TL+ G+ L D FERG VD F Sbjct: 1392 YLVTVYTGHRRGAATSSKVTVTLYGLDGEREPHH-------LADPDTPVFERGAVDAFL- 1443
Query: 265 LGTCTSAGTICALNLTSDGSGSHPGWYVN 351 L T G + +L L D SG P WYV+ Sbjct: 1444 LSTLFPLGELRSLRLWHDNSGDRPSWYVS 1472
>sp|Q2EG98|PK1L3_MOUSE Polycystic kidney disease protein 1-like 3 OS=Mus musculus GN=Pkd1l3 PE=2 SV=1 Length = 2201
Score = 42.4 bits (98), Expect = 0.001 Identities = 34/107 (31%), Positives = 46/107 (42%), Gaps = 5/107 (4%) Frame = +1
Query: 61 TTIADN-----CVYTFFIKTGTRISGGTNSVISATLFDSTGDSVQISDIETWGGLMGTDY 225 T +ADN Y + TG R T + + TL+ S G S L + Sbjct: 1118 TVLADNDPSSASHYLIQVYTGYRRRAATTAKVVITLYGSEGHSEPHH-------LCDPEK 1170
Query: 226 DYFERGNVDIFSGLGTCTSAGTICALNLTSDGSGSHPGWYVNYAEVT 366 FERG +D+F L T + G + L L D SG P WYV+ V+ Sbjct: 1171 TVFERGALDVFL-LSTGSWLGDLHGLRLWHDNSGDSPSWYVSQVIVS 1216
>sp|O16025|AOSL_PLEHO Allene oxide synthase-lipoxygenase protein OS=Plexaura homomalla PE=1 SV=1 Length = 1066
Score = 34.3 bits (77), Expect = 0.31 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 3/95 (3%) Frame = +1
Query: 76 NCVYTFFIKTGTRISGGTNSVISATLFDSTGDSVQISDIETWGGLMGTDYDYFERGNVDI 255 N +Y ++TG R GT++ I+ + + G + + ++ W ++ FE G+ + Sbjct: 373 NAIYNVEVETGDREHAGTDATITIRITGAKGRTDYLK-LDKW------FHNDFEAGSKEQ 425
Query: 256 FSGLGTCTSAGTICALNLTSDGSG---SHPGWYVN 351 ++ G G I + L SDG G P W+VN Sbjct: 426 YTVQG--FDVGDIQLIELHSDGGGYWSGDPDWFVN 458
>sp|Q5RDD2|PR38A_PONAB Pre-mRNA-splicing factor 38A OS=Pongo abelii GN=PRPF38A PE=2 SV=1 Length = 312
Score = 32.0 bits (71), Expect = 1.5 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = -3
Query: 481 RRRSKSPGTHRARKGKHHRQSTAQSQSPH 395 R RSKSPG HR+ + + H +S +S+ H Sbjct: 276 RSRSKSPGHHRSHRHRSHSKSPERSKKSH 304
>sp|Q4FK66|PR38A_MOUSE Pre-mRNA-splicing factor 38A OS=Mus musculus GN=Prpf38a PE=1 SV=1 Length = 312
Score = 32.0 bits (71), Expect = 1.5 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = -3
Query: 481 RRRSKSPGTHRARKGKHHRQSTAQSQSPH 395 R RSKSPG HR+ + + H +S +S+ H Sbjct: 276 RSRSKSPGHHRSHRHRSHSKSPERSKKSH 304
>sp|Q8HXH6|PR38A_MACFA Pre-mRNA-splicing factor 38A OS=Macaca fascicularis GN=PRPF38A PE=2 SV=1 Length = 312
Score = 32.0 bits (71), Expect = 1.5 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = -3
Query: 481 RRRSKSPGTHRARKGKHHRQSTAQSQSPH 395 R RSKSPG HR+ + + H +S +S+ H Sbjct: 276 RSRSKSPGHHRSHRHRSHSKSPERSKKSH 304
>sp|Q8NAV1|PR38A_HUMAN Pre-mRNA-splicing factor 38A OS=Homo sapiens GN=PRPF38A PE=1 SV=1 Length = 312
Score = 32.0 bits (71), Expect = 1.5 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = -3
Query: 481 RRRSKSPGTHRARKGKHHRQSTAQSQSPH 395 R RSKSPG HR+ + + H +S +S+ H Sbjct: 276 RSRSKSPGHHRSHRHRSHSKSPERSKKSH 304
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B7FGR1 |
Definition |
tr|B7FGR1|B7FGR1_MEDTR Putative uncharacterized protein OS=Medicago truncatula |
Align length |
135 |
Score (bit) |
171.0 |
E-value |
2.0e-41 |
Report |
|