NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920601
Clone id YMU001_000139_B02
Library
Length 495
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000139_B02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTTGTCCTCTGTCACCTTGACGTTGACCTGAGTAGTCCACATTCGGGGAATCTCTGTATC
AATTGAGACCAAAAATCACTGATGAGGACAAGAGACTCTTGTACAAGCCATCCTTCGGCC
ATGCTACCCTCGGGGCGAGCCCTTTGACGAATAAACCCCTTGTAAAGTCTTCATAAATAT
CTCTAAGGAAGAACATCCACCTACTATGGACCACCCCAACAACTGCAACTTCATCGACCA
CATGTACAAGTACATGCTTTTGGATGGTAAGAATGTTTGTTGGAAAGTACTTCTCCCCAT
ACACACTGCTTCAATAGCATTTAAGCGTGCTACATTGATGCTATTTTTCAGCTTATATAT
GAATCTACTCAATATATGGCTTCTCTATATATGGCATTCAGGTCCCCTCTATATATACAT
CATCTCATGTGTGTATTCTACACACTTTGGGGTTCTATTTCTGTGCTCTCTCTCCTCTCT
CTCTCGCAGGTACTC
■■Homology search results ■■ -
sp_hit_id Q8GWP0
Definition sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39 OS=Arabidopsis thaliana
Align length 89
Score (bit) 32.7
E-value 0.93
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920601|Adiantum capillus-veneris mRNA, clone:
YMU001_000139_B02.
         (495 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39 OS=Arabidopsis ...    33   0.93 
sp|Q1RHP1|SECY_RICBR Preprotein translocase subunit secY OS=Rick...    31   2.7  
sp|Q7VQQ8|Y060_BLOFL UPF0078 membrane protein Bfl060 OS=Blochman...    30   4.6  
sp|P40499|ICE2_YEAST Protein ICE2 OS=Saccharomyces cerevisiae GN...    30   4.6  
sp|A1JQW7|Y3680_YERE8 UPF0078 membrane protein YE3680 OS=Yersini...    30   7.9  
sp|Q1ACE4|NU1C_CHAVU NAD(P)H-quinone oxidoreductase subunit 1, c...    30   7.9  
sp|Q9LPI7|NAC12_ARATH NAC domain-containing protein 12 OS=Arabid...    30   7.9  
sp|O43193|MTLR_HUMAN Motilin receptor OS=Homo sapiens GN=MLNR PE...    30   7.9  
sp|P78953|DMF1_SCHPO Division mal foutue 1 protein OS=Schizosacc...    30   7.9  

>sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39 OS=Arabidopsis
           thaliana GN=MYB39 PE=2 SV=1
          Length = 360

 Score = 32.7 bits (73), Expect = 0.93
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
 Frame = +2

Query: 47  GISVSIETKNH**GQETLVQAILRPCYPRGEPFDE*TPCKVFINISKE----EHPPTMDH 214
           G S + +  +H       ++  + PCY   +  +  TP    +++S E     HP T  H
Sbjct: 271 GTSTTTKVNDH-------IRTGMMPCYYGDQLLE--TPSTGSVSVSPETTSLNHPSTAQH 321

Query: 215 PNNCNFIDHMYKYMLLDGKNVCWKVLLPI 301
            +  +F++   K++  +  + CWK  L +
Sbjct: 322 SSGSDFLEDWEKFLDDETSDSCWKSFLDL 350


>sp|Q1RHP1|SECY_RICBR Preprotein translocase subunit secY
           OS=Rickettsia bellii (strain RML369-C) GN=secY PE=3 SV=1
          Length = 433

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 287 VLLPIHTASIAFKRATLMLFFSLYMNLLNIWLLYIWHSGPLYIYI 421
           V+ PI  +SI    ATL  F S    ++N+   Y+ H  P+YI +
Sbjct: 269 VIPPIFASSILLFPATLANFSSSNSEIMNMLTYYLGHGKPIYILL 313


>sp|Q7VQQ8|Y060_BLOFL UPF0078 membrane protein Bfl060 OS=Blochmannia
           floridanus GN=Bfl060 PE=3 SV=1
          Length = 196

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 314 IAFKRATLMLFFSLYMNLLNIWLLYIWHSGPLYIYIIS 427
           I +K A  +L F      + IWL   +H  P+Y+YII+
Sbjct: 51  INYKIAIFVLLFDSLKGAVPIWLGTYFHIDPIYLYIIA 88


>sp|P40499|ICE2_YEAST Protein ICE2 OS=Saccharomyces cerevisiae
           GN=ICE2 PE=1 SV=1
          Length = 491

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
 Frame = +2

Query: 278 CWKVLLPIHTASIAFKRATL-------MLFFSLYMNLLNIWLLYIWHSGPLYIYIISCV- 433
           C+ +L  + +  I+FK   L       +  F+LY     + +L   H G LYI+  +C+ 
Sbjct: 18  CFYLLFTLLSIPISFKVGGLECGLSFTVTLFTLYFITTTLNVLARRHGGRLYIFFTNCLY 77

Query: 434 YSTHF 448
           YS HF
Sbjct: 78  YSQHF 82


>sp|A1JQW7|Y3680_YERE8 UPF0078 membrane protein YE3680 OS=Yersinia
           enterocolitica serotype O:8 / biotype 1B (strain 8081)
           GN=YE3680 PE=3 SV=1
          Length = 217

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 329 ATLMLFFSLYMNLLNIWLLYIWHSGPLYI 415
           A  +L F +   +L +W+ Y+ H  PLY+
Sbjct: 55  AATVLIFDVLKGMLPVWIAYLLHVSPLYL 83


>sp|Q1ACE4|NU1C_CHAVU NAD(P)H-quinone oxidoreductase subunit 1,
           chloroplastic OS=Chara vulgaris GN=ndhA PE=3 SV=2
          Length = 376

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 215 PNNCNFIDHMYKYML-LDGKNVCWKVLLPIHTASIAFKRATLMLFFSL 355
           P    F   MYK  L LD  N+  ++++PI   SI   +  L +FF++
Sbjct: 285 PTTLIFFISMYKVSLPLDSSNLLLELIIPIIHISITLAKTYLFIFFAI 332


>sp|Q9LPI7|NAC12_ARATH NAC domain-containing protein 12
           OS=Arabidopsis thaliana GN=NST3 PE=2 SV=1
          Length = 358

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 182 SKEEHPPTMDHPNNCNFIDHMYKYMLLDGKNVC 280
           ++EE  PT  +  N   +DH+  YM   G N+C
Sbjct: 198 TEEEKGPTFHNTQNVTGLDHVLLYMDRTGSNIC 230


>sp|O43193|MTLR_HUMAN Motilin receptor OS=Homo sapiens GN=MLNR PE=2
           SV=1
          Length = 412

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +2

Query: 275 VCWKVLLPIHTASIAFKRA--TLMLFFSLYMNLLNIWLLYIWHS-GPLYIYIISCVY 436
           +CW   LP H   I +     + M++FS Y N++ + L Y+  S  P+   +IS  Y
Sbjct: 309 ICW---LPFHVGRIIYINTEDSRMMYFSQYFNIVALQLFYLSASINPILYNLISKKY 362


>sp|P78953|DMF1_SCHPO Division mal foutue 1 protein
            OS=Schizosaccharomyces pombe GN=dmf1 PE=1 SV=1
          Length = 920

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 233  IDHMYKYMLLDGKNVCWKVLLPIHTASIAFKRATLMLFFSLYMNLL 370
            +D  +  +  D K VC K L  +++ S A  R T  L+   Y+N +
Sbjct: 874  VDRRHVQLFADSKKVCQKWLQVMNSRSFALDRGTEKLWLQEYVNFM 919
tr_hit_id Q8IKC4
Definition tr|Q8IKC4|Q8IKC4_PLAF7 Putative uncharacterized protein OS=Plasmodium falciparum (isolate 3D7)
Align length 83
Score (bit) 40.0
E-value 0.06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920601|Adiantum capillus-veneris mRNA, clone:
YMU001_000139_B02.
         (495 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8IKC4|Q8IKC4_PLAF7 Putative uncharacterized protein OS=Plasm...    40   0.060
tr|Q0J791|Q0J791_ORYSJ Os08g0215200 protein (Fragment) OS=Oryza ...    40   0.078
tr|A5AGY3|A5AGY3_VITVI Putative uncharacterized protein OS=Vitis...    39   0.10 
tr|Q0J2T3|Q0J2T3_ORYSJ Os09g0301700 protein OS=Oryza sativa subs...    39   0.17 
tr|A3BWD2|A3BWD2_ORYSJ Putative uncharacterized protein OS=Oryza...    39   0.17 
tr|Q9SPU5|Q9SPU5_MAIZE Putative transposase protein (Fragment) O...    38   0.23 
tr|A7QJY3|A7QJY3_VITVI Chromosome undetermined scaffold_109, who...    38   0.30 
tr|A5B8Q2|A5B8Q2_VITVI Putative uncharacterized protein OS=Vitis...    38   0.30 
tr|Q2RAB8|Q2RAB8_ORYSJ Transposon protein, putative, CACTA, En/S...    37   0.39 
tr|Q0J652|Q0J652_ORYSJ Os08g0367000 protein OS=Oryza sativa subs...    37   0.39 
tr|Q94J99|Q94J99_ORYSJ Putative TNP2 OS=Oryza sativa subsp. japo...    37   0.51 
tr|Q94I42|Q94I42_ORYSJ Putative transposable element (Transposon...    37   0.51 
tr|Q8S7R7|Q8S7R7_ORYSJ Putative retrotransposable elements TNP2 ...    37   0.51 
tr|Q7XL62|Q7XL62_ORYSJ OSJNBa0084N21.14 protein OS=Oryza sativa ...    37   0.51 
tr|Q7XKK8|Q7XKK8_ORYSJ OSJNBb0061C13.11 protein OS=Oryza sativa ...    37   0.51 
tr|Q7XK79|Q7XK79_ORYSJ OSJNBa0028M15.8 protein OS=Oryza sativa s...    37   0.51 
tr|Q65WX5|Q65WX5_ORYSJ Putative polyprotein OS=Oryza sativa subs...    37   0.51 
tr|Q60F04|Q60F04_ORYSJ Putative polyprotein OS=Oryza sativa subs...    37   0.51 
tr|Q60ED4|Q60ED4_ORYSJ Transposase family protein (Transposon pr...    37   0.51 
tr|Q5H9Y5|Q5H9Y5_ORYSA P0650D04.17 protein OS=Oryza sativa GN=P0...    37   0.51 
tr|Q5H9Y3|Q5H9Y3_ORYSA P0650D04.19 protein OS=Oryza sativa GN=P0...    37   0.51 
tr|Q2QNP4|Q2QNP4_ORYSJ Transposon protein, putative, CACTA, En/S...    37   0.51 
tr|Q0E017|Q0E017_ORYSJ Os02g0583300 protein OS=Oryza sativa subs...    37   0.51 
tr|Q0DD95|Q0DD95_ORYSJ Os06g0240700 protein OS=Oryza sativa subs...    37   0.51 
tr|Q01MV2|Q01MV2_ORYSA OSIGBa0102O13.4 protein OS=Oryza sativa G...    37   0.51 
tr|Q01MB4|Q01MB4_ORYSA OSIGBa0132O24.3 protein OS=Oryza sativa G...    37   0.51 
tr|Q01IV9|Q01IV9_ORYSA OSIGBa0102I15.9 protein OS=Oryza sativa G...    37   0.51 
tr|Q6UU79|Q6UU79_ORYSJ Putative transposon protein OS=Oryza sati...    37   0.66 
tr|Q2R4K6|Q2R4K6_ORYSJ Transposon protein, putative, CACTA, En/S...    37   0.66 
tr|Q2QRK7|Q2QRK7_ORYSJ Transposon protein, putative, CACTA, En/S...    37   0.66 

>tr|Q8IKC4|Q8IKC4_PLAF7 Putative uncharacterized protein
           OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0682 PE=4
           SV=1
          Length = 306

 Score = 40.0 bits (92), Expect = 0.060
 Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 10/83 (12%)
 Frame = +2

Query: 182 SKEEHPPTMDHPNNCNFIDHMYKYMLLDGKNVCWKVLLPIHTASI----------AFKRA 331
           S+ + P T+DH N   F D++Y    L+ +N+ W++ +   T+SI           F   
Sbjct: 146 SEIKPPFTVDHLNTNVFNDYLYTGDPLNPQNLMWRIAVSCSTSSIILTIFPCVFWIFCDT 205

Query: 332 TLMLFFSLYMNLLNIWLLYIWHS 400
            + LF  +++ +++++LLYI+++
Sbjct: 206 AIFLFLLIFLFIMSLFLLYIYNT 228


>tr|Q0J791|Q0J791_ORYSJ Os08g0215200 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os08g0215200 PE=4 SV=1
          Length = 682

 Score = 39.7 bits (91), Expect = 0.078
 Identities = 21/45 (46%), Positives = 29/45 (64%)
 Frame = -2

Query: 182 RYL*RLYKGFIRQRARPEGSMAEGWLVQESLVLISDFWSQLIQRF 48
           R+L RL KG++R ++ PEGS+AEG+L  ESL   S +      RF
Sbjct: 620 RFLMRL-KGYVRTKSHPEGSIAEGYLFDESLTFCSRYLEGCETRF 663


>tr|A5AGY3|A5AGY3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_032667 PE=4 SV=1
          Length = 852

 Score = 39.3 bits (90), Expect = 0.10
 Identities = 17/41 (41%), Positives = 29/41 (70%)
 Frame = -2

Query: 170 RLYKGFIRQRARPEGSMAEGWLVQESLVLISDFWSQLIQRF 48
           R  K ++R +ARPEGS+AE ++V E+L+  S + +++  RF
Sbjct: 639 RTLKRYVRNKARPEGSIAEAYIVNEALMFCSMYLTRIGTRF 679


>tr|Q0J2T3|Q0J2T3_ORYSJ Os09g0301700 protein OS=Oryza sativa subsp.
           japonica GN=Os09g0301700 PE=4 SV=1
          Length = 695

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 18/41 (43%), Positives = 28/41 (68%)
 Frame = -2

Query: 182 RYL*RLYKGFIRQRARPEGSMAEGWLVQESLVLISDFWSQL 60
           RYL R  KG++R +A PEGS+AEG++ +E L   + F+  +
Sbjct: 466 RYL-RTLKGYVRNKACPEGSIAEGYISEECLTFCARFFEDV 505


>tr|A3BWD2|A3BWD2_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_027354 PE=4 SV=1
          Length = 1056

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 17/33 (51%), Positives = 22/33 (66%)
 Frame = -2

Query: 170  RLYKGFIRQRARPEGSMAEGWLVQESLVLISDF 72
            R YK  +R RA PEGS+AEG++ +E L   S F
Sbjct: 916  RKYKALVRNRAYPEGSIAEGYIAEECLTYCSRF 948



 Score = 34.7 bits (78), Expect = 2.5
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -2

Query: 161 KGFIRQRARPEGSMAEGWLVQESLVLISDF 72
           K  +R RA PEGS+AEG++ +E L   S F
Sbjct: 709 KALVRNRAYPEGSIAEGYIAEECLTYCSRF 738


>tr|Q9SPU5|Q9SPU5_MAIZE Putative transposase protein (Fragment)
           OS=Zea mays GN=Sho PE=4 SV=1
          Length = 793

 Score = 38.1 bits (87), Expect = 0.23
 Identities = 17/37 (45%), Positives = 26/37 (70%)
 Frame = -2

Query: 182 RYL*RLYKGFIRQRARPEGSMAEGWLVQESLVLISDF 72
           RYL R  K ++R +A PEGS+AEG++++E +   S F
Sbjct: 750 RYL-RTLKAYVRNKAHPEGSIAEGYILEECMTFCSRF 785


>tr|A7QJY3|A7QJY3_VITVI Chromosome undetermined scaffold_109, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00000849001 PE=4 SV=1
          Length = 360

 Score = 37.7 bits (86), Expect = 0.30
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = -2

Query: 164 YKGFIRQRARPEGSMAEGWLVQESLVLISDF 72
           YK ++R +A PEGS+AE ++V ESL   S +
Sbjct: 14  YKSYVRNKAYPEGSIAEAYIVNESLTFCSQY 44


>tr|A5B8Q2|A5B8Q2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_003315 PE=4 SV=1
          Length = 1226

 Score = 37.7 bits (86), Expect = 0.30
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = -2

Query: 164 YKGFIRQRARPEGSMAEGWLVQESLVLISDF 72
           YK ++R +A PEGS+AE ++V ESL   S +
Sbjct: 574 YKSYVRNKAYPEGSIAEAYIVNESLTFCSQY 604


>tr|Q2RAB8|Q2RAB8_ORYSJ Transposon protein, putative, CACTA, En/Spm
           sub-class OS=Oryza sativa subsp. japonica
           GN=LOC_Os11g05920 PE=4 SV=1
          Length = 1135

 Score = 37.4 bits (85), Expect = 0.39
 Identities = 17/37 (45%), Positives = 25/37 (67%)
 Frame = -2

Query: 182 RYL*RLYKGFIRQRARPEGSMAEGWLVQESLVLISDF 72
           RY+  + KG+IR RA PEGSM EG+  +E++    D+
Sbjct: 670 RYM-SILKGYIRNRAHPEGSMIEGYTTEEAVECCMDY 705


>tr|Q0J652|Q0J652_ORYSJ Os08g0367000 protein OS=Oryza sativa subsp.
            japonica GN=Os08g0367000 PE=4 SV=1
          Length = 2245

 Score = 37.4 bits (85), Expect = 0.39
 Identities = 20/46 (43%), Positives = 30/46 (65%)
 Frame = -2

Query: 182  RYL*RLYKGFIRQRARPEGSMAEGWLVQESLVLISDFWSQLIQRFP 45
            RYL +L K ++R +ARPEGS+AE +L  E +     F S+ ++ FP
Sbjct: 1189 RYLGKL-KSYVRNKARPEGSIAESYLADECMA----FCSRYLEGFP 1229