BP920602 |
Clone id |
YMU001_000139_B03 |
Library |
YMU01 |
Length |
508 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000139_B03. |
Accession |
BP920602 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
ACAGCATGCTGCATCATGATCAAGTGCGGTATCAATATCGCCCTCATCACTGGTACTAAC TCCCTGATTTGACGGCCCAGCATGAGTATCTCCAGCATTACCCTGGTGACAGGTGCTTTG TTGTGCTTGCTCAATATAATTAAGATCCCCATGGCCTACTCTTTCATTCTTCTCCCAGCT GAATGCAGTACCTTGATATGTCCTCATCTTGTGGATAATTCTCTACACTGTCCAAAGAAT TTTCTGGTTTGCCTTGACTAGTATCCATTGCAATGACAGATGAAGCATGGACCGAGTTTC CCATAGGCTGCACTGAAAATGCCCTCGGTCTGTTGAGCTCCTGCAGCATTGCTTCTCGGC GGCTTCTTTTTAACCGTTCTAGGTCTTCGGCTTCATAATCAGGTTCTGTTGGAGTAGCAT CCATATGAGCTGCCCCATATGATAACTGATCAGCACCTGAACTTTCTCCACATTTGCGCT TTGAGGACTCTCCAACGAAATATCTCTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9VR91 |
Definition |
sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster |
Align length |
65 |
Score (bit) |
34.7 |
E-value |
0.27 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7Q178 |
Definition |
tr|A7Q178|A7Q178_VITVI Chromosome chr10 scaffold_43, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
34 |
Score (bit) |
38.9 |
E-value |
7.0e-05 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP920602|Adiantum capillus-veneris mRNA, clone: YMU001_000139_B03. (508 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7Q178|A7Q178_VITVI Chromosome chr10 scaffold_43, whole genom... 39 7e-05 tr|A5AZQ1|A5AZQ1_VITVI Putative uncharacterized protein OS=Vitis... 39 0.003 tr|B8AKX3|B8AKX3_ORYSI Putative uncharacterized protein OS=Oryza... 33 0.012 tr|Q9SHI0|Q9SHI0_ARATH F20D23.9 protein (Putative uncharacterize... 34 0.025 tr|A3AND2|A3AND2_ORYSJ Putative uncharacterized protein OS=Oryza... 33 0.054 tr|Q10CF1|Q10CF1_ORYSJ Expressed protein OS=Oryza sativa subsp. ... 33 0.054 tr|A8B3K5|A8B3K5_GIALA Transcription regulatory protein SNF2 OS=... 38 0.25 tr|Q6ZLP6|Q6ZLP6_ORYSJ Os07g0150500 protein OS=Oryza sativa subs... 37 0.55 tr|A2YI76|A2YI76_ORYSI Putative uncharacterized protein OS=Oryza... 37 0.55 tr|B3RY36|B3RY36_TRIAD Putative uncharacterized protein OS=Trich... 36 0.94 tr|B4H2G8|B4H2G8_DROPE GL26839 OS=Drosophila persimilis GN=GL268... 35 1.6 tr|Q6P110|Q6P110_DANRE Zgc:77312 OS=Danio rerio GN=zgc:77312 PE=... 35 2.1 tr|A5CQ88|A5CQ88_CLAM3 Putative ATP-dependent DNA helicase OS=Cl... 35 2.7 tr|Q29IG8|Q29IG8_DROPS GA11166 OS=Drosophila pseudoobscura pseud... 35 2.7 tr|Q17IM6|Q17IM6_AEDAE Hect E3 ubiquitin ligase OS=Aedes aegypti... 35 2.7 tr|B4PYG4|B4PYG4_DROYA GE17877 OS=Drosophila yakuba GN=GE17877 P... 35 2.7 tr|B4I673|B4I673_DROSE GM23028 OS=Drosophila sechellia GN=GM2302... 35 2.7 tr|B3NWI8|B3NWI8_DROER GG19286 OS=Drosophila erecta GN=GG19286 P... 35 2.7 tr|B3MXM6|B3MXM6_DROAN GF19414 OS=Drosophila ananassae GN=GF1941... 35 2.7 tr|B0WVV1|B0WVV1_CULQU Hect E3 ubiquitin ligase OS=Culex quinque... 35 2.7 tr|Q5TMP0|Q5TMP0_ANOGA AGAP011823-PA (Fragment) OS=Anopheles gam... 34 3.6 tr|Q4QHY1|Q4QHY1_LEIMA Putative uncharacterized protein OS=Leish... 34 3.6 tr|B4MTE3|B4MTE3_DROWI GK20144 OS=Drosophila willistoni GN=GK201... 34 3.6 tr|B4MAL3|B4MAL3_DROVI GJ15642 OS=Drosophila virilis GN=GJ15642 ... 34 3.6 tr|B4JXC9|B4JXC9_DROGR GH17927 OS=Drosophila grimshawi GN=GH1792... 34 3.6 tr|B4L654|B4L654_DROMO GI16306 OS=Drosophila mojavensis GN=GI163... 34 4.7 tr|B0RE34|B0RE34_CLAMS Putative ATP-dependent DNA helicase OS=Cl... 33 8.0 tr|Q4JIS4|Q4JIS4_9BACT Protein kinase/protein beta WD-40 repeat ... 33 8.0 tr|B6KE02|B6KE02_TOXGO Zinc finger (C3HC4 RING finger) protein, ... 33 8.0
>tr|A7Q178|A7Q178_VITVI Chromosome chr10 scaffold_43, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00028343001 PE=4 SV=1 Length = 947
Score = 38.9 bits (89), Expect(2) = 7e-05 Identities = 21/34 (61%), Positives = 24/34 (70%), Gaps = 1/34 (2%) Frame = -1
Query: 298 NSVHASSVIAMDT-SQGKPENSLDSVENYPQDED 200 +S ASSVIAMDT ENS++SVENYP D D Sbjct: 571 DSTRASSVIAMDTIGHSANENSMESVENYPGDID 604
Score = 30.4 bits (67), Expect(2) = 7e-05 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = -2
Query: 147 DLNYIEQAQQSTCHQGNAGDTHAGPSNQGVSTSDEGD 37 ++NY QAQQS C Q A P GVS++++G+ Sbjct: 624 EMNYSNQAQQSICFQPAA---EVVPGEMGVSSTNDGE 657
>tr|A5AZQ1|A5AZQ1_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032620 PE=4 SV=1 Length = 951
Score = 38.9 bits (89), Expect(2) = 0.003 Identities = 21/34 (61%), Positives = 24/34 (70%), Gaps = 1/34 (2%) Frame = -1
Query: 298 NSVHASSVIAMDT-SQGKPENSLDSVENYPQDED 200 +S ASSVIAMDT ENS++SVENYP D D Sbjct: 588 DSTRASSVIAMDTIGHSANENSMESVENYPGDID 621
Score = 25.0 bits (53), Expect(2) = 0.003 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 8/54 (14%) Frame = -2
Query: 147 DLNYIEQAQQSTCHQ-------GNAGDTHAGPSNQGVSTS-DEGDIDTALDHDA 10 ++NY QAQQS C Q G G+ + G S G + H+A Sbjct: 641 EMNYSNQAQQSICFQPAAEVVPGEYGEIVTAQARDGFSFGISGGSVGMCASHEA 694
>tr|B8AKX3|B8AKX3_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_13792 PE=4 SV=1 Length = 943
Score = 33.5 bits (75), Expect(2) = 0.012 Identities = 16/31 (51%), Positives = 21/31 (67%) Frame = -1
Query: 298 NSVHASSVIAMDTSQGKPENSLDSVENYPQD 206 +S+ SSV AMDT E+S++SVE YP D Sbjct: 571 DSMRESSVAAMDTVHSADEDSMESVEYYPGD 601
Score = 28.1 bits (61), Expect(2) = 0.012 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = -2
Query: 147 DLNYIEQAQQSTCHQGNAGDTHAGPSNQGVSTSDEGD 37 DLNY QAQQS C Q +G + G S+++EG+ Sbjct: 623 DLNYSNQAQQSACVQPASG---SDGREIGGSSTNEGE 656
>tr|Q9SHI0|Q9SHI0_ARATH F20D23.9 protein (Putative uncharacterized protein At1g17210) OS=Arabidopsis thaliana GN=At1g17210 PE=2 SV=1 Length = 958
Score = 34.3 bits (77), Expect(2) = 0.025 Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 1/38 (2%) Frame = -1
Query: 298 NSVHASSVIAMDT-SQGKPENSLDSVENYPQDEDISRY 188 +S ASSVIAMDT ++S++SVEN+P D D Y Sbjct: 584 DSTRASSVIAMDTICHSANDDSMESVENHPGDFDDINY 621
Score = 26.2 bits (56), Expect(2) = 0.025 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = -2
Query: 147 DLNYIEQAQQSTCHQGNAGDTHAGPSNQGVSTSDEGD 37 +LN+ QAQQS C Q +A QG+S+ ++G+ Sbjct: 637 ELNFSNQAQQSACFQPAPVRFNA---EQGISSINDGE 670
>tr|A3AND2|A3AND2_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_012304 PE=4 SV=1 Length = 1296
Score = 33.5 bits (75), Expect(2) = 0.054 Identities = 16/31 (51%), Positives = 21/31 (67%) Frame = -1
Query: 298 NSVHASSVIAMDTSQGKPENSLDSVENYPQD 206 +S+ SSV AMDT E+S++SVE YP D Sbjct: 673 DSMRESSVAAMDTVHSADEDSMESVEYYPGD 703
Score = 25.8 bits (55), Expect(2) = 0.054 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -2
Query: 144 LNYIEQAQQSTCHQGNAGDTHAGPSNQGVSTSDEGD 37 LNY QAQQS C Q +G + G S+++EG+ Sbjct: 726 LNYSNQAQQSACVQPASG---SDGREIGGSSTNEGE 758
>tr|Q10CF1|Q10CF1_ORYSJ Expressed protein OS=Oryza sativa subsp. japonica GN=LOC_Os03g57160 PE=4 SV=1 Length = 943
Score = 33.5 bits (75), Expect(2) = 0.054 Identities = 16/31 (51%), Positives = 21/31 (67%) Frame = -1
Query: 298 NSVHASSVIAMDTSQGKPENSLDSVENYPQD 206 +S+ SSV AMDT E+S++SVE YP D Sbjct: 571 DSMRESSVAAMDTVHSADEDSMESVEYYPGD 601
Score = 25.8 bits (55), Expect(2) = 0.054 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -2
Query: 144 LNYIEQAQQSTCHQGNAGDTHAGPSNQGVSTSDEGD 37 LNY QAQQS C Q +G + G S+++EG+ Sbjct: 624 LNYSNQAQQSACVQPASG---SDGREIGGSSTNEGE 656
>tr|A8B3K5|A8B3K5_GIALA Transcription regulatory protein SNF2 OS=Giardia lamblia ATCC 50803 GN=GL50803_16143 PE=4 SV=1 Length = 2079
Score = 38.1 bits (87), Expect = 0.25 Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 10/119 (8%) Frame = -1
Query: 496 VGESSKRKCGESS-------GADQL--SYGAAHMDATPTEPDYEAEDLERLKRSRREAML 344 VG SKR+CG ++ G D+L SY ++ D++ E D ++E L R+ E M+ Sbjct: 820 VGRRSKRQCGSTAVTFADDLGEDELDSSYSYSNKDSSEDENDNDSE-LSRVSSVPTEMMV 878
Query: 343 QELNRPRAFSVQPMGNSVHASSVIAMDTSQGKPENSLDSVENYPQDED-ISRYCIQLGE 170 P+G++ +S+I T+ PE + D +N P +D I+ IQL E Sbjct: 879 ------------PIGST---ASLIGAKTASSLPELTQDLPQNAPITKDNIAEVAIQLAE 922
>tr|Q6ZLP6|Q6ZLP6_ORYSJ Os07g0150500 protein OS=Oryza sativa subsp. japonica GN=OJ1027_G06.28 PE=4 SV=1 Length = 943
Score = 37.0 bits (84), Expect = 0.55 Identities = 19/32 (59%), Positives = 22/32 (68%) Frame = -1
Query: 295 SVHASSVIAMDTSQGKPENSLDSVENYPQDED 200 S+ ASSVIAMDT ENS +SVE +P D D Sbjct: 586 SMRASSVIAMDTVHSAEENSTESVEYHPCDVD 617
>tr|A2YI76|A2YI76_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_24913 PE=4 SV=1 Length = 1165
Score = 37.0 bits (84), Expect = 0.55 Identities = 19/32 (59%), Positives = 22/32 (68%) Frame = -1
Query: 295 SVHASSVIAMDTSQGKPENSLDSVENYPQDED 200 S+ ASSVIAMDT ENS +SVE +P D D Sbjct: 586 SMRASSVIAMDTVHSAEENSTESVEYHPCDVD 617
>tr|B3RY36|B3RY36_TRIAD Putative uncharacterized protein OS=Trichoplax adhaerens GN=TRIADDRAFT_56425 PE=4 SV=1 Length = 4625
Score = 36.2 bits (82), Expect = 0.94 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%) Frame = -2
Query: 201 TYQGTAFSWEKNE--RVGHGDLNYIEQAQQSTCHQGNAGDTHAGPSNQGVSTSDEGDIDT 28 T G ++W K + R+GHG +++ + ++ C QG T A S V+ +D G++ T Sbjct: 4031 TKNGDLYTWGKGDYYRLGHGTNDHVRRPRKVACLQGKQIVTVAAGSLHCVACTDAGEVFT 4090
Query: 27 ALDHD 13 D+D Sbjct: 4091 WGDND 4095
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