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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920606
Clone id YMU001_000139_B10
Library
Length 405
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000139_B10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGCACCGACATATAGCGGCATGGCTAACATGTGAATATAAAGTGATCACCAGAGAAATGG
CTACATTGATGGCAACCGGTTCTCCTGTCTCTGTATAGCCTCCTGATGGCCATGCCATGA
CAAACCTAAAGCAGAAATCCTCCATCCATCACATACATTTGACTTCAAAACTTCAGCTGT
CCTTGCATATGCACCTTTGCATGGAGCAACAAAGCTTGTACAATCAACAATTCTATGGCT
CGAATGTCAAGTATGCGGTAACCGACTTTGTTTTCTGTTTCATCACCACTGCCTCAAACA
TTCCATCAGACCCAAATGTGCTTGGAAATTCACAGGGTTCTACTGGCCCTGGCAGCCTAA
AAAACACTGTGAAAGGGCCTGGAGGGCAGAGGAATTGCGTATGCA
■■Homology search results ■■ -
sp_hit_id Q66FR8
Definition sp|Q66FR8|FADB_YERPS Fatty acid oxidation complex subunit alpha OS=Yersinia pseudotuberculosis
Align length 37
Score (bit) 30.0
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920606|Adiantum capillus-veneris mRNA, clone:
YMU001_000139_B10.
         (405 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q66FR8|FADB_YERPS Fatty acid oxidation complex subunit alpha ...    30   3.7  
sp|Q24266|BTD_DROME Transcription factor btd OS=Drosophila melan...    30   3.7  
sp|A8G8D1|FADB_SERP5 Fatty acid oxidation complex subunit alpha ...    30   4.8  
sp|A0QSZ0|METX_MYCS2 Homoserine O-acetyltransferase OS=Mycobacte...    29   6.3  
sp|P28817|HIBCH_YEAST 3-hydroxyisobutyryl-CoA hydrolase, mitocho...    29   6.3  
sp|A4TR27|FADB_YERPP Fatty acid oxidation complex subunit alpha ...    29   6.3  
sp|Q1CN99|FADB_YERPN Fatty acid oxidation complex subunit alpha ...    29   6.3  
sp|Q8ZAN0|FADB_YERPE Fatty acid oxidation complex subunit alpha ...    29   6.3  
sp|Q1C2C4|FADB_YERPA Fatty acid oxidation complex subunit alpha ...    29   6.3  
sp|A7FDF2|FADB_YERP3 Fatty acid oxidation complex subunit alpha ...    29   6.3  
sp|A1JIG4|FADB_YERE8 Fatty acid oxidation complex subunit alpha ...    29   6.3  
sp|Q19749|ODP2_CAEEL Dihydrolipoyllysine-residue acetyltransfera...    29   8.2  
sp|Q47L17|METX_THEFY Homoserine O-acetyltransferase OS=Thermobif...    29   8.2  
sp|O68640|METX_CORGL Homoserine O-acetyltransferase OS=Corynebac...    29   8.2  
sp|Q7MQH9|FADB_VIBVY Fatty acid oxidation complex subunit alpha ...    29   8.2  
sp|Q8DDK6|FADB_VIBVU Fatty acid oxidation complex subunit alpha ...    29   8.2  
sp|A7N1D2|FADB_VIBHB Fatty acid oxidation complex subunit alpha ...    29   8.2  

>sp|Q66FR8|FADB_YERPS Fatty acid oxidation complex subunit alpha
           OS=Yersinia pseudotuberculosis GN=fadB PE=3 SV=1
          Length = 729

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 110 PCHDKPKAEILHPSHTFDFKTSAVLAYAPLHGATKLV 220
           P H  P  EI+  + T D   +AV+AYA   G T +V
Sbjct: 454 PVHQMPLVEIIRGAKTSDKTLAAVVAYATQMGKTPIV 490


>sp|Q24266|BTD_DROME Transcription factor btd OS=Drosophila
           melanogaster GN=btd PE=1 SV=1
          Length = 644

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
 Frame = +3

Query: 123 NLKQKSSIHHIHLTSKLQLSLHM-HLC---MEQQSLYNQQFYGSNVKYAVTDFVFCFITT 290
           +L  + + HH+HL+ +     HM HL     +QQ    QQ      +         F++ 
Sbjct: 36  HLHMQQAQHHLHLSHQQAQQQHMQHLTQQQQQQQQQQQQQQQQQQQQQQPQQQQHDFLSA 95

Query: 291 ASNIPSDPNVLGNSQGSTGPGS 356
           A+ + + P++ G+S GS+   S
Sbjct: 96  AALLSAPPSLSGSSSGSSSGSS 117


>sp|A8G8D1|FADB_SERP5 Fatty acid oxidation complex subunit alpha
           OS=Serratia proteamaculans (strain 568) GN=fadB PE=3
           SV=1
          Length = 729

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 110 PCHDKPKAEILHPSHTFDFKTSAVLAYAPLHGATKLV 220
           P H  P  EI+    T D   +AV+AYA   G T +V
Sbjct: 454 PVHRMPLVEIIRGEQTSDSTIAAVVAYASRMGKTPIV 490


>sp|A0QSZ0|METX_MYCS2 Homoserine O-acetyltransferase
           OS=Mycobacterium smegmatis GN=metX PE=3 SV=1
          Length = 380

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/26 (61%), Positives = 17/26 (65%)
 Frame = +3

Query: 315 NVLGNSQGSTGPGSLKNTVKGPGGQR 392
           NVLG  +GSTGPGSL    K P G R
Sbjct: 108 NVLGGCRGSTGPGSLAPDGK-PWGSR 132


>sp|P28817|HIBCH_YEAST 3-hydroxyisobutyryl-CoA hydrolase,
           mitochondrial OS=Saccharomyces cerevisiae GN=EHD3 PE=1
           SV=2
          Length = 500

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = +3

Query: 27  TCEYKVITREMATLMATGSPVSV*PPDGHAMTNLKQKSSIHHIHLTSKLQLSLHMHLCME 206
           + E K   +E+ T + T SP S+          L Q++S  HI    K  L    ++CM 
Sbjct: 310 SAEGKAFAQEIKTKLLTKSPSSL-----QIALRLVQENSRDHIESAIKRDLYTAANMCMN 364

Query: 207 QQSL 218
           Q SL
Sbjct: 365 QDSL 368


>sp|A4TR27|FADB_YERPP Fatty acid oxidation complex subunit alpha
           OS=Yersinia pestis (strain Pestoides F) GN=fadB PE=3
           SV=1
          Length = 729

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 110 PCHDKPKAEILHPSHTFDFKTSAVLAYAPLHGATKLV 220
           P H  P  EI+  + T D   +AV+AYA   G T +V
Sbjct: 454 PVHRMPLVEIIRGAKTSDKTLAAVVAYATQMGKTPIV 490


>sp|Q1CN99|FADB_YERPN Fatty acid oxidation complex subunit alpha
           OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=fadB
           PE=3 SV=1
          Length = 729

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 110 PCHDKPKAEILHPSHTFDFKTSAVLAYAPLHGATKLV 220
           P H  P  EI+  + T D   +AV+AYA   G T +V
Sbjct: 454 PVHRMPLVEIIRGAKTSDKTLAAVVAYATQMGKTPIV 490


>sp|Q8ZAN0|FADB_YERPE Fatty acid oxidation complex subunit alpha
           OS=Yersinia pestis GN=fadB PE=3 SV=1
          Length = 729

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 110 PCHDKPKAEILHPSHTFDFKTSAVLAYAPLHGATKLV 220
           P H  P  EI+  + T D   +AV+AYA   G T +V
Sbjct: 454 PVHRMPLVEIIRGAKTSDKTLAAVVAYATQMGKTPIV 490


>sp|Q1C2C4|FADB_YERPA Fatty acid oxidation complex subunit alpha
           OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=fadB
           PE=3 SV=1
          Length = 729

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 110 PCHDKPKAEILHPSHTFDFKTSAVLAYAPLHGATKLV 220
           P H  P  EI+  + T D   +AV+AYA   G T +V
Sbjct: 454 PVHRMPLVEIIRGAKTSDKTLAAVVAYATQMGKTPIV 490


>sp|A7FDF2|FADB_YERP3 Fatty acid oxidation complex subunit alpha
           OS=Yersinia pseudotuberculosis serotype O:1b (strain IP
           31758) GN=fadB PE=3 SV=1
          Length = 729

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 110 PCHDKPKAEILHPSHTFDFKTSAVLAYAPLHGATKLV 220
           P H  P  EI+  + T D   +AV+AYA   G T +V
Sbjct: 454 PVHRMPLVEIIRGAKTSDKTLAAVVAYATQMGKTPIV 490
tr_hit_id A9RMA9
Definition tr|A9RMA9|A9RMA9_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 41
Score (bit) 70.5
E-value 4.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920606|Adiantum capillus-veneris mRNA, clone:
YMU001_000139_B10.
         (405 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RMA9|A9RMA9_PHYPA Predicted protein (Fragment) OS=Physcomit...    70   4e-11
tr|Q9ZVL2|Q9ZVL2_ARATH T22H22.23 protein (Putative uncharacteriz...    62   2e-08
tr|Q8RWL4|Q8RWL4_ARATH Putative uncharacterized protein At1g5484...    62   2e-08
tr|A7QPG3|A7QPG3_VITVI Chromosome chr18 scaffold_137, whole geno...    62   2e-08
tr|Q9ZVL1|Q9ZVL1_ARATH T22H22.24 (Putative uncharacterized prote...    56   1e-06
tr|Q84K79|Q84K79_ARATH Putative uncharacterized protein At1g5485...    56   1e-06
tr|Q9SYQ0|Q9SYQ0_ARATH F9H16.15 protein OS=Arabidopsis thaliana ...    55   1e-06
tr|A7PSC6|A7PSC6_VITVI Chromosome chr14 scaffold_27, whole genom...    55   1e-06
tr|Q9S842|Q9S842_ARATH Putative uncharacterized protein F14G6.4 ...    54   3e-06
tr|A2A1W7|A2A1W7_TOBAC Small heat shock protein OS=Nicotiana tab...    53   9e-06
tr|A2A1W8|A2A1W8_NICBE Small heat shock protein OS=Nicotiana ben...    52   1e-05
tr|A7PSC9|A7PSC9_VITVI Chromosome chr14 scaffold_27, whole genom...    50   4e-05
tr|A5B818|A5B818_VITVI Putative uncharacterized protein OS=Vitis...    50   4e-05
tr|Q84KA7|Q84KA7_CUCME Heat shock protein-like protein OS=Cucumi...    49   1e-04
tr|Q84KA6|Q84KA6_CUCME Heat shock protein-like protein OS=Cucumi...    49   2e-04
tr|A7PSC7|A7PSC7_VITVI Chromosome chr14 scaffold_27, whole genom...    48   2e-04
tr|A5B817|A5B817_VITVI Putative uncharacterized protein OS=Vitis...    47   4e-04
tr|Q6GX31|Q6GX31_CUCME Hsp1 (Fragment) OS=Cucumis melo GN=Hsp1 P...    40   0.045
tr|Q6GX30|Q6GX30_CUCME Hsp2 (Fragment) OS=Cucumis melo GN=Hsp2 P...    40   0.077
tr|B0W2S0|B0W2S0_CULQU Eukaryotic translation initiation factor ...    36   1.1  
tr|A3KG49|A3KG49_MOUSE Novel protein OS=Mus musculus GN=EG434797...    35   2.5  
tr|B4NFP7|B4NFP7_DROWI GK22678 OS=Drosophila willistoni GN=GK226...    34   3.2  
tr|A2BG95|A2BG95_MOUSE Novel protein OS=Mus musculus GN=EG546325...    33   7.2  
tr|B5DQ50|B5DQ50_DROPS GA23828 OS=Drosophila pseudoobscura pseud...    33   7.2  
tr|A7S166|A7S166_NEMVE Predicted protein (Fragment) OS=Nematoste...    33   7.2  

>tr|A9RMA9|A9RMA9_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_24474 PE=4 SV=1
          Length = 319

 Score = 70.5 bits (171), Expect = 4e-11
 Identities = 30/41 (73%), Positives = 34/41 (82%)
 Frame = -3

Query: 400 TQFLCPPGPFTVFFRLPGPVEPCEFPSTFGSDGMFEAVVMK 278
           TQ+LCPPGPFTV F LPGPVEP +F  TFGSDG+ E +VMK
Sbjct: 279 TQYLCPPGPFTVSFSLPGPVEPNQFTGTFGSDGILEGIVMK 319


>tr|Q9ZVL2|Q9ZVL2_ARATH T22H22.23 protein (Putative uncharacterized
           protein F14C21.38) OS=Arabidopsis thaliana GN=T22H22.23
           PE=4 SV=1
          Length = 345

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 28/45 (62%), Positives = 32/45 (71%)
 Frame = -3

Query: 400 TQFLCPPGPFTVFFRLPGPVEPCEFPSTFGSDGMFEAVVMKQKTK 266
           T+ LCPPG F+V FRLPGPV P EF   FG+DG+ E VVMK   K
Sbjct: 298 TRSLCPPGNFSVSFRLPGPVHPHEFSGNFGTDGILEGVVMKNLQK 342


>tr|Q8RWL4|Q8RWL4_ARATH Putative uncharacterized protein At1g54840
           OS=Arabidopsis thaliana GN=At1g54840 PE=2 SV=1
          Length = 349

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 28/45 (62%), Positives = 32/45 (71%)
 Frame = -3

Query: 400 TQFLCPPGPFTVFFRLPGPVEPCEFPSTFGSDGMFEAVVMKQKTK 266
           T+ LCPPG F+V FRLPGPV P EF   FG+DG+ E VVMK   K
Sbjct: 302 TRSLCPPGNFSVSFRLPGPVHPHEFSGNFGTDGILEGVVMKNLQK 346


>tr|A7QPG3|A7QPG3_VITVI Chromosome chr18 scaffold_137, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00002929001
           PE=4 SV=1
          Length = 395

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 26/42 (61%), Positives = 33/42 (78%)
 Frame = -3

Query: 397 QFLCPPGPFTVFFRLPGPVEPCEFPSTFGSDGMFEAVVMKQK 272
           Q LCPPGPFTV FRLPGPV+P  F + F SDG+FE +++K +
Sbjct: 351 QQLCPPGPFTVSFRLPGPVDPRLFKANFRSDGIFEGIIVKSE 392


>tr|Q9ZVL1|Q9ZVL1_ARATH T22H22.24 (Putative uncharacterized protein
           F14C21.42) OS=Arabidopsis thaliana GN=T22H22.24 PE=3
           SV=1
          Length = 197

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 26/41 (63%), Positives = 29/41 (70%)
 Frame = -3

Query: 400 TQFLCPPGPFTVFFRLPGPVEPCEFPSTFGSDGMFEAVVMK 278
           TQ LCPPG FT+ F+LPGPV   EF   FGSDG+ E VV K
Sbjct: 152 TQNLCPPGHFTINFQLPGPVSNEEFNGNFGSDGVLEGVVKK 192


>tr|Q84K79|Q84K79_ARATH Putative uncharacterized protein At1g54850
           OS=Arabidopsis thaliana GN=At1g54850 PE=2 SV=1
          Length = 206

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 26/41 (63%), Positives = 29/41 (70%)
 Frame = -3

Query: 400 TQFLCPPGPFTVFFRLPGPVEPCEFPSTFGSDGMFEAVVMK 278
           TQ LCPPG FT+ F+LPGPV   EF   FGSDG+ E VV K
Sbjct: 161 TQNLCPPGHFTINFQLPGPVSNEEFNGNFGSDGVLEGVVKK 201


>tr|Q9SYQ0|Q9SYQ0_ARATH F9H16.15 protein OS=Arabidopsis thaliana
           GN=At1g20870 PE=4 SV=1
          Length = 463

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 23/40 (57%), Positives = 29/40 (72%)
 Frame = -3

Query: 391 LCPPGPFTVFFRLPGPVEPCEFPSTFGSDGMFEAVVMKQK 272
           LCPPGPF + F LPGPV+P  F   F SDG+FE V+++ K
Sbjct: 422 LCPPGPFKLCFNLPGPVDPRLFSPNFRSDGIFEGVIIRHK 461


>tr|A7PSC6|A7PSC6_VITVI Chromosome chr14 scaffold_27, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00022852001
           PE=4 SV=1
          Length = 165

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 23/42 (54%), Positives = 31/42 (73%)
 Frame = -3

Query: 400 TQFLCPPGPFTVFFRLPGPVEPCEFPSTFGSDGMFEAVVMKQ 275
           TQ LCP G F++ F+LPGPV+P +F   FG DG+ E +VMK+
Sbjct: 120 TQNLCPSGHFSISFQLPGPVDPQQFSGNFGIDGILEGIVMKR 161


>tr|Q9S842|Q9S842_ARATH Putative uncharacterized protein F14G6.4
           (Putative uncharacterized protein At1g76440) (Putative
           uncharacterized protein F15M4.6) OS=Arabidopsis thaliana
           GN=F15M4.6 PE=2 SV=1
          Length = 143

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 24/40 (60%), Positives = 29/40 (72%)
 Frame = -3

Query: 397 QFLCPPGPFTVFFRLPGPVEPCEFPSTFGSDGMFEAVVMK 278
           Q LCPPGPF++ F LPG V+P  F   F SDG+FE VV+K
Sbjct: 96  QQLCPPGPFSITFNLPGQVDPRLFSPNFRSDGIFEVVVVK 135


>tr|A2A1W7|A2A1W7_TOBAC Small heat shock protein OS=Nicotiana
           tabacum GN=Ntshsp PE=2 SV=1
          Length = 154

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 25/48 (52%), Positives = 31/48 (64%)
 Frame = -3

Query: 397 QFLCPPGPFTVFFRLPGPVEPCEFPSTFGSDGMFEAVVMKQKTKSVTA 254
           Q L PPGPFTV F LPGPV+P      F SDG+ E +V+K +   V+A
Sbjct: 92  QQLSPPGPFTVSFNLPGPVDPSLCSPRFRSDGILEVIVLKYRIPIVSA 139