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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920609
Clone id YMU001_000139_C03
Library
Length 214
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000139_C03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CGAACAGTTATAGATGCCATTGAGCTGACATCCTAAGAATGCTCAATGTATTATTGTTAA
GAGTCAATTTGCTTTCTACTGGTACTCGATGCGTGCATATTATCTCTGTGACTTTCCTCT
ACTGCATTGTTCCTGTGTCACTCTGTTACGAGGGTGAATTGTCACATTCATCATAGCCAT
GATCCGACTTGTTTGTATACTTGCTTAAGTTGTA
■■Homology search results ■■ -
sp_hit_id Q64343
Definition sp|Q64343|ABCG1_MOUSE ATP-binding cassette sub-family G member 1 OS=Mus musculus
Align length 31
Score (bit) 29.3
E-value 6.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920609|Adiantum capillus-veneris mRNA, clone:
YMU001_000139_C03.
         (214 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q64343|ABCG1_MOUSE ATP-binding cassette sub-family G member 1...    29   6.3  
sp|P45844|ABCG1_HUMAN ATP-binding cassette sub-family G member 1...    29   6.3  

>sp|Q64343|ABCG1_MOUSE ATP-binding cassette sub-family G member 1
           OS=Mus musculus GN=Abcg1 PE=2 SV=1
          Length = 666

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 10/31 (32%)
 Frame = +2

Query: 77  YWYSMRAYYLCD----------FPLLHCSCV 139
           YWYS++AYYL            FP+ +CS V
Sbjct: 479 YWYSLKAYYLAKTMADVPFQIMFPVAYCSIV 509


>sp|P45844|ABCG1_HUMAN ATP-binding cassette sub-family G member 1
           OS=Homo sapiens GN=ABCG1 PE=2 SV=3
          Length = 678

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 10/31 (32%)
 Frame = +2

Query: 77  YWYSMRAYYLCD----------FPLLHCSCV 139
           YWYS++AYYL            FP+ +CS V
Sbjct: 491 YWYSLKAYYLAKTMADVPFQIMFPVAYCSIV 521
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920609|Adiantum capillus-veneris mRNA, clone:
YMU001_000139_C03.
         (214 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******