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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920612
Clone id YMU001_000139_C06
Library
Length 544
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000139_C06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAAGAGCAGAACCGTCATTTGGTTCATCCCAGATGGGTTGAAGCTGCACTCCATACATGG
AGGCAGCCTTGTGAAGAATTTTACTCAGTAAGTGATGCACCATGCCTGACCACTTTCTCA
AAGACCGTGAACAAGGAGCGGCCAGCAGACCCAGAGATAACATGACCGTCTTTATGCTGC
TATCAAGATCCAATGGCCACATTTTATGTCAGATTTCTGCCATGTCTATGTTGGAGCTTG
AGAGAGAGATCTACAACAACGAGAATCAGTTCGCCTAGATGTGGAGCTCTCTAAAGGTGT
GCATCAAGATATATTTTGCACTGCATGGATTGCTTCTTGTGCCATTTCAGGACATTTGTG
TGTGAGAGCCATGTAAAGGACTGGTTTATGATGAGCATGTTTACTGCATAGCAGTGCGGT
CGAGCGTCGTGGCTTTTTGACGAGCTTAACTAATGAAGATGATCAACAGTTTTTCTCTAT
TTCAGCAGATCACCAGATTTTGTGTACTTGAATAAATACAAGTTAACAATCTCTGTGGTA
TGGA
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920612|Adiantum capillus-veneris mRNA, clone:
YMU001_000139_C06.
         (544 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id A9TTN5
Definition tr|A9TTN5|A9TTN5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 43
Score (bit) 45.1
E-value 0.003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920612|Adiantum capillus-veneris mRNA, clone:
YMU001_000139_C06.
         (544 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TTN5|A9TTN5_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.003
tr|A9RY96|A9RY96_PHYPA Predicted protein (Fragment) OS=Physcomit...    44   0.007
tr|B6UE64|B6UE64_MAIZE CPL3 OS=Zea mays PE=2 SV=1                      35   2.0  
tr|Q75KI1|Q75KI1_ORYSJ Os05g0390500 protein OS=Oryza sativa subs...    34   4.4  
tr|B8AXY9|B8AXY9_ORYSI Putative uncharacterized protein OS=Oryza...    34   4.4  
tr|B8AXY8|B8AXY8_ORYSI Putative uncharacterized protein OS=Oryza...    34   4.4  
tr|A3B3P2|A3B3P2_ORYSJ Putative uncharacterized protein OS=Oryza...    34   4.4  

>tr|A9TTN5|A9TTN5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_198166 PE=4 SV=1
          Length = 563

 Score = 45.1 bits (105), Expect = 0.003
 Identities = 22/43 (51%), Positives = 30/43 (69%), Gaps = 3/43 (6%)
 Frame = +1

Query: 19  LVHPRWVEAALHTWRQPCEEFYSVSD---APCLTTFSKTVNKE 138
           LVHPRWVEAA + W++P E+ + V+D   A   TTFSK ++ E
Sbjct: 474 LVHPRWVEAASYLWKRPREKDFPVTDDASALISTTFSKNISVE 516


>tr|A9RY96|A9RY96_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_121133 PE=4 SV=1
          Length = 389

 Score = 43.5 bits (101), Expect = 0.007
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
 Frame = +1

Query: 1   QEQNRHLVHPRWVEAALHTWRQPCEEFYSVSD---APCLTTFSKTV 129
           +E +  LVHPRWV+A  + W +P EE Y V++    P + TF+K V
Sbjct: 275 KEHDVFLVHPRWVDATSYLWSRPPEEDYPVTENPAGPAVVTFAKNV 320


>tr|B6UE64|B6UE64_MAIZE CPL3 OS=Zea mays PE=2 SV=1
          Length = 531

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +1

Query: 13  RHLVHPRWVEAALHTW-RQPCEEFYSVSDAPCLTTFSKTVNKERPADPEI 159
           + LVHPRW+EAA   W RQP E+F          T  K  +KE+ +D ++
Sbjct: 440 KFLVHPRWIEAANFRWHRQPEEDF--------PVTAPKEKSKEKDSDNDV 481


>tr|Q75KI1|Q75KI1_ORYSJ Os05g0390500 protein OS=Oryza sativa subsp.
           japonica GN=OJ1057_G07.1 PE=2 SV=2
          Length = 536

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +1

Query: 13  RHLVHPRWVEAALHTWRQPCEEFYSVSDAPCLTTFSKTVNKERPADPEIT 162
           + LVHPRW+EAA   W++  EE + V+         K   KE  AD  I+
Sbjct: 450 KFLVHPRWIEAANFRWQRQQEEDFPVAR-------PKEKGKENAADAPIS 492


>tr|B8AXY9|B8AXY9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_19829 PE=4 SV=1
          Length = 574

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +1

Query: 13  RHLVHPRWVEAALHTWRQPCEEFYSVSDAPCLTTFSKTVNKERPADPEIT 162
           + LVHPRW+EAA   W++  EE + V+         K   KE  AD  I+
Sbjct: 476 KFLVHPRWIEAANFRWQRQQEEDFPVAR-------PKEKGKENAADAPIS 518


>tr|B8AXY8|B8AXY8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_19828 PE=4 SV=1
          Length = 430

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +1

Query: 13  RHLVHPRWVEAALHTWRQPCEEFYSVSDAPCLTTFSKTVNKERPADPEIT 162
           + LVHPRW+EAA   W++  EE + V+         K   KE  AD  I+
Sbjct: 233 KFLVHPRWIEAANFRWQRQQEEDFPVAR-------PKEKGKENAADAPIS 275


>tr|A3B3P2|A3B3P2_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_017664 PE=4 SV=1
          Length = 549

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +1

Query: 13  RHLVHPRWVEAALHTWRQPCEEFYSVSDAPCLTTFSKTVNKERPADPEIT 162
           + LVHPRW+EAA   W++  EE + V+         K   KE  AD  I+
Sbjct: 463 KFLVHPRWIEAANFRWQRQQEEDFPVAR-------PKEKGKENAADAPIS 505