NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920616
Clone id YMU001_000139_C10
Library
Length 345
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000139_C10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGGAAATATTGAAATGGAAACAAAGTGAGCTCAAACTAATGAGCTCACCCTATAAGTACT
AGTCCTCTTGCTCATAGGATCTTACTCTGCTCTGCATCAAAAGGTGTCGTAGATCAGGTA
TGCGCACCATGCTACGAAGGTGGATATGTTTTTTCAAGAGCCACACGAATTTTCGAGGTG
TCTGTCATCGATTTTAACCATATTAAAGAAGTTATAACTGCGCCATCAAGCCTATCTTTA
ACTGCCCCGATCACCACGCCTGCAAAAGTATTCTATCAAGTCGGACCACGGTATAGGCCC
TTGGGTTTATTACACCCCAAGTCCCCAAGTCAAAAGACATTAAAA
■■Homology search results ■■ -
sp_hit_id Q99MV5
Definition sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 OS=Mus musculus
Align length 82
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920616|Adiantum capillus-veneris mRNA, clone:
YMU001_000139_C10.
         (345 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 OS=Mus musculus ...    31   2.2  
sp|Q184N9|ANMK_CLOD6 Anhydro-N-acetylmuramic acid kinase OS=Clos...    31   2.2  
sp|Q6KEQ9|PC11X_PIG Protocadherin-11 X-linked OS=Sus scrofa GN=P...    30   3.7  
sp|Q54JI9|BECNB_DICDI Beclin-1-like protein B OS=Dictyostelium d...    30   3.7  
sp|O75179|ANR17_HUMAN Ankyrin repeat domain-containing protein 1...    30   3.7  
sp|Q99NH0|ANR17_MOUSE Ankyrin repeat domain-containing protein 1...    30   4.8  
sp|Q49XH5|TRPD_STAS1 Anthranilate phosphoribosyltransferase OS=S...    29   8.3  
sp|Q6DRG7|MYPT1_DANRE Protein phosphatase 1 regulatory subunit 1...    29   8.3  

>sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 OS=Mus musculus
            GN=Mov10l1 PE=1 SV=1
          Length = 1187

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
 Frame = +1

Query: 76   RILLCSASKGVVDQVCAPCYE------GGYVFSRATRIFEVSVID----FNHIKEVITAP 225
            RIL+C+ S    D VC   +E         V   AT  FE ++ID    +    E I   
Sbjct: 797  RILVCAPSNSAADLVCLRLHESKVPKPAAMVRVNATCRFEETIIDAIKPYCRDGEDIWRA 856

Query: 226  SSLSLTAPITTPAKVFYQVGPR 291
            S   +     + A +FYQ+G R
Sbjct: 857  SRFRIIITTCSSAGLFYQIGVR 878


>sp|Q184N9|ANMK_CLOD6 Anhydro-N-acetylmuramic acid kinase
           OS=Clostridium difficile (strain 630) GN=anmK PE=3 SV=1
          Length = 386

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 12/80 (15%)
 Frame = +1

Query: 88  CSASKGVVDQVCAPCYEGGYVFSRATRI------FEVSVIDF--NHIKEVITAPSS---- 231
           C   +  VD +C+  ++ GY+FS+A +       F ++ +DF  +H + +   P S    
Sbjct: 56  CIEEESSVDLICSLNFKLGYLFSKAVKSVCHKANFHIANLDFIASHGQTIFHIPRSYNNF 115

Query: 232 LSLTAPITTPAKVFYQVGPR 291
           +S T  I  PA + Y+   +
Sbjct: 116 VSSTLQIGEPAVIAYETNTK 135


>sp|Q6KEQ9|PC11X_PIG Protocadherin-11 X-linked OS=Sus scrofa
           GN=PCDH11X PE=2 SV=1
          Length = 1117

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +1

Query: 136 EGGYVFSRATRIFEVSVIDFNHIKEVITAPS---SLSLTAPITTPAKVFYQV 282
           +GG +   +T    ++V+D N  K V   PS   S  L  P T P  V + V
Sbjct: 647 DGGRISRSSTAKVTINVVDVNDNKPVFVVPSSNYSFELVPPSTNPGTVVFTV 698


>sp|Q54JI9|BECNB_DICDI Beclin-1-like protein B OS=Dictyostelium
           discoideum GN=atg6B PE=3 SV=1
          Length = 855

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
 Frame = +1

Query: 211 VITAPSSLSLTAPITTPAKVFYQVGPRYRPLGLLHPK-------SPSQKTLK 345
           VIT+P S    + IT+P+K+  Q  PR RPL +   K       SP +  LK
Sbjct: 331 VITSPISRISPSNITSPSKLSQQSTPRQRPLTIAPTKLNISQVSSPQKPRLK 382


>sp|O75179|ANR17_HUMAN Ankyrin repeat domain-containing protein 17
            OS=Homo sapiens GN=ANKRD17 PE=1 SV=3
          Length = 2603

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 178  VSVIDFNHIKEVITAPSSLSLTAPITTPAKVFYQVGPRYRPL 303
            V+V+  NHIK   + PSS+ L + ++T +     V P  +P+
Sbjct: 2200 VAVLSVNHIKRPHSVPSSVQLPSTLSTQSACQNSVHPANKPI 2241


>sp|Q99NH0|ANR17_MOUSE Ankyrin repeat domain-containing protein 17
            OS=Mus musculus GN=Ankrd17 PE=1 SV=2
          Length = 2603

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 181  SVIDFNHIKEVITAPSSLSLTAPITTPAKVFYQVGPRYRPL 303
            SV++ NHIK   + PSS+ L + ++T +     V P  +P+
Sbjct: 2196 SVLNVNHIKRPHSVPSSVQLPSTLSTQSACQNSVHPANKPV 2236


>sp|Q49XH5|TRPD_STAS1 Anthranilate phosphoribosyltransferase
           OS=Staphylococcus saprophyticus subsp. saprophyticus
           (strain ATCC 15305 / DSM 20229) GN=trpD PE=3 SV=1
          Length = 338

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +1

Query: 142 GYVFSRATRIFEVSVIDFNHIKEVITAPSSLSLTAPITTPAKVFYQV 282
           G  F  AT  + + +     I++++T P+  ++T PI  P K+ YQV
Sbjct: 143 GLAFLSATDTYPI-MKSIQPIRKMMTNPTIFNITGPIINPFKLDYQV 188


>sp|Q6DRG7|MYPT1_DANRE Protein phosphatase 1 regulatory subunit 12A
           OS=Danio rerio GN=ppp1r12a PE=2 SV=2
          Length = 1049

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +1

Query: 217 TAPSSLSLTAPITTPAKVFYQVGPRYR---PLGLLHPKSPSQK 336
           TAPSS+++T+P T   +V     P  +   P G L PK   +K
Sbjct: 391 TAPSSITVTSPTTPSNQVTTPTSPTKKVSTPAGKLSPKEEDRK 433
tr_hit_id Q2GTJ0
Definition tr|Q2GTJ0|Q2GTJ0_CHAGB Putative uncharacterized protein OS=Chaetomium globosum
Align length 42
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920616|Adiantum capillus-veneris mRNA, clone:
YMU001_000139_C10.
         (345 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2GTJ0|Q2GTJ0_CHAGB Putative uncharacterized protein OS=Chaet...    34   3.2  
tr|A6NXL7|A6NXL7_9BACE Putative uncharacterized protein OS=Bacte...    34   4.1  
tr|B3L401|B3L401_PLAKH Putative uncharacterized protein OS=Plasm...    34   4.1  
tr|A5K7M3|A5K7M3_PLAVI Putative uncharacterized protein OS=Plasm...    33   5.4  
tr|B3E317|B3E317_GEOLS Putative uncharacterized protein OS=Geoba...    33   9.2  

>tr|Q2GTJ0|Q2GTJ0_CHAGB Putative uncharacterized protein
           OS=Chaetomium globosum GN=CHGG_08714 PE=4 SV=1
          Length = 937

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 199 HIKEVITAPSSLSLTAPITTPAKVFYQVGPRYRPLGLLHPKS 324
           HI+EVI    +  L +P  TP++  ++  P +   GL HP+S
Sbjct: 399 HIQEVIRLEGAKYLCSPYQTPSEPIFRPAPHHVDFGLAHPQS 440


>tr|A6NXL7|A6NXL7_9BACE Putative uncharacterized protein
           OS=Bacteroides capillosus ATCC 29799 GN=BACCAP_02963
           PE=4 SV=1
          Length = 197

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = +1

Query: 148 VFSRATRIFEVSVIDFNHIKEVITAPSSLSLTAPITTPAKVFYQVGPRYRPLGLLHPKSP 327
           VFS  T +F   + D    +  ITAPS    +A I    KV+Y + P    LG    K+P
Sbjct: 71  VFSHETALFLHGISDRTPFEHTITAPSGCIPSAAIKAECKVYY-IKPELFTLGRTEKKTP 129

Query: 328 S 330
           +
Sbjct: 130 A 130


>tr|B3L401|B3L401_PLAKH Putative uncharacterized protein
           OS=Plasmodium knowlesi (strain H) GN=PKH_082060 PE=4
           SV=1
          Length = 3394

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 85  LCSASKGVVDQVCAPCYEGGYVFSRATRIFEVSVIDFNHIKEVITAPS 228
           +C  + G+  +VC P Y  GYVF   TR+  V ++  N   E++  PS
Sbjct: 674 ICLENNGL-PKVCFPAYSFGYVFD--TRLLRVHMLSINPYPEILLTPS 718


>tr|A5K7M3|A5K7M3_PLAVI Putative uncharacterized protein
           OS=Plasmodium vivax GN=PVX_095215 PE=4 SV=1
          Length = 3396

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +1

Query: 85  LCSASKGVVDQVCAPCYEGGYVFSRATRIFEVSVIDFNHIKEVITAP 225
           +C  ++G+  +VC P Y  GYVF   TR+  V +I+ N   E++  P
Sbjct: 671 ICVHNEGL-PKVCFPAYSFGYVFD--TRLLRVHMININPYPEILLTP 714


>tr|B3E317|B3E317_GEOLS Putative uncharacterized protein
           OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 /
           SZ) GN=Glov_3576 PE=3 SV=1
          Length = 444

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +1

Query: 211 VITAPSSLSLTAPITTPAKVFYQVGPRYRPLGLLHP 318
           +I AP+ L L A    PA + Y V P++RPL L  P
Sbjct: 2   IIPAPAILRLVAATLIPAALLYAVTPQFRPLLLFVP 37