BP920626
Clone id YMU001_000139_D11
Library
Length 349
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000139_D11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TTGGCTTTTAAGCATGACCAGGTTTCCTTTCTTTATTAGACAAGAACCATGTGCAAAAAT
AGTAGTGTAACCCAAATCGTCTAATTGCCCAGCAAACAACAAACTCTTTGTCAATTTGGG
TACATGTCTAACATTCTGCAACATAATCTCGGTGCCATTCCGCATACAAATTTTTGCGGC
CCTAATACCACATATTTCAAGCCCATAAGAATTCTCCAACAACACTGTACCATGTATAGT
AGTATATGTGGATAACCACTCCTTATGAGGAGTCACATGAAAACTAGGACACCTAAGTCC
ACTATCCAATTCTAAGCATAAAACTCATCAAGAGCTAACAATGCATCAG
■■Homology search results ■■ -
sp_hit_id P10978
Definition sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum
Align length 94
Score (bit) 49.7
E-value 5.0e-06
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920626|Adiantum capillus-veneris mRNA, clone:
YMU001_000139_D11.
(349 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra... 50 5e-06
sp|P43427|GTR5_RAT Solute carrier family 2, facilitated glucose ... 36 0.067
sp|Q9KF46|ADEC_BACHD Adenine deaminase OS=Bacillus halodurans GN... 33 0.44
sp|Q9WV38|GTR5_MOUSE Solute carrier family 2, facilitated glucos... 32 0.75
sp|O25857|NUOH_HELPY NADH-quinone oxidoreductase subunit H OS=He... 29 6.3
sp|Q9ZJW0|NUOH_HELPJ NADH-quinone oxidoreductase subunit H OS=He... 29 6.3
sp|Q1CRZ4|NUOH_HELPH NADH-quinone oxidoreductase subunit H OS=He... 29 6.3
sp|Q4ULZ2|Y580_RICFE Putative ankyrin repeat protein RF_0580 OS=... 29 8.2

>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
Length = 1328

Score = 49.7 bits (117), Expect = 5e-06
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Frame = -2

Query: 285 SFHVTPHKEWLSTYTT-IHGTVLLENSYGLEICGIRAAKICMRNGTEIMLQNVRHVPKLT 109
S H TP ++ Y GTV + N+ +I GI I G ++L++VRHVP L
Sbjct: 301 SHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLR 360

Query: 108 KSLLFAGQLDDLGYTTIFAHGSCLIKKGNLVMLK 7
+L+ LD GY + FA+ + KG+LV+ K
Sbjct: 361 MNLISGIALDRDGYESYFANQKWRLTKGSLVIAK 394


>sp|P43427|GTR5_RAT Solute carrier family 2, facilitated glucose
transporter member 5 OS=Rattus norvegicus GN=Slc2a5 PE=2
SV=1
Length = 502

Score = 35.8 bits (81), Expect = 0.067
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +2

Query: 98 NKLFVNLGTCLTFCNIISVPFRIQIFAALIPHISSP*EFSNNTVPCIVVYVDNHSL 265
N L + TCLT C +++V +Q + +P++S + C++VYV H++
Sbjct: 342 NLLLIGFSTCLTACIVLTVALALQNTISWMPYVS---------IVCVIVYVIGHAV 388


>sp|Q9KF46|ADEC_BACHD Adenine deaminase OS=Bacillus halodurans
GN=ade PE=3 SV=1
Length = 585

Score = 33.1 bits (74), Expect = 0.44
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2

Query: 120 PKLTKSLLFAGQLDDLGYTTIFAHGSCLIKKGNLVM 13
P T LLF L L T +F +G+C+ K G L++
Sbjct: 324 PGFTADLLFIEDLQSLAITHVFKNGTCVAKNGKLIV 359


>sp|Q9WV38|GTR5_MOUSE Solute carrier family 2, facilitated glucose
transporter member 5 OS=Mus musculus GN=Slc2a5 PE=2 SV=1
Length = 501

Score = 32.3 bits (72), Expect = 0.75
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +2

Query: 104 LFVNLGTCLTFCNIISVPFRIQIFAALIPHISSP*EFSNNTVPCIVVYVDNHSL 265
L V TCL C +++ +Q + +P+IS + C++VYV H+L
Sbjct: 344 LLVGFSTCLIACLVLTAALALQNTISWMPYIS---------IVCVIVYVIGHAL 388


>sp|O25857|NUOH_HELPY NADH-quinone oxidoreductase subunit H
OS=Helicobacter pylori GN=nuoH PE=3 SV=1
Length = 329

Score = 29.3 bits (64), Expect = 6.3
Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -3

Query: 305 IVDLGVLVFM*LLIRSGYPHILL-YMVQCCWRILMGL 198
++ G VF+ + +R+ YPH+ ++ CW+I++ L
Sbjct: 279 LIKAGFFVFLSMWVRATYPHVRPDQLMDMCWKIMLPL 315


>sp|Q9ZJW0|NUOH_HELPJ NADH-quinone oxidoreductase subunit H
OS=Helicobacter pylori J99 GN=nuoH PE=3 SV=1
Length = 329

Score = 29.3 bits (64), Expect = 6.3
Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -3

Query: 305 IVDLGVLVFM*LLIRSGYPHILL-YMVQCCWRILMGL 198
++ G VF+ + +R+ YPH+ ++ CW+I++ L
Sbjct: 279 LIKAGFFVFLSMWVRATYPHVRPDQLMNMCWKIMLPL 315


>sp|Q1CRZ4|NUOH_HELPH NADH-quinone oxidoreductase subunit H
OS=Helicobacter pylori (strain HPAG1) GN=nuoH PE=3 SV=1
Length = 329

Score = 29.3 bits (64), Expect = 6.3
Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -3

Query: 305 IVDLGVLVFM*LLIRSGYPHILL-YMVQCCWRILMGL 198
++ G VF+ + +R+ YPH+ ++ CW+I++ L
Sbjct: 279 LIKAGFFVFLSMWVRATYPHVRPDQLMNMCWKIMLPL 315


>sp|Q4ULZ2|Y580_RICFE Putative ankyrin repeat protein RF_0580
OS=Rickettsia felis GN=RF_0580 PE=4 SV=1
Length = 305

Score = 28.9 bits (63), Expect = 8.2
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = -2

Query: 222 LLENSYGLEICGIRAAKICMRNGTEIMLQNVRHVPKLTKSLLFAGQLDDLGYTTIFAHGS 43
+L N G I AAK ++NG ++ ++N + L +++L GQ +L +F
Sbjct: 177 ILHNIIGTN--NIEAAKFLLQNGADVNIENNNNFTPLDRAIL--GQHKEL--AELFLKSG 230

Query: 42 CLIKKGNLVMLK 7
IK GN + K
Sbjct: 231 ATIKIGNTMDFK 242


tr_hit_id B8YLY7
Definition tr|B8YLY7|B8YLY7_LOTJA Gag-Pol polyprotein OS=Lotus japonicus
Align length 104
Score (bit) 83.6
E-value 5.0e-15
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP920626|Adiantum capillus-veneris mRNA, clone:
YMU001_000139_D11.
(349 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B8YLY7|B8YLY7_LOTJA Gag-Pol polyprotein OS=Lotus japonicus PE... 84 5e-15
tr|B8YLY6|B8YLY6_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 81 3e-14
tr|B8YLY5|B8YLY5_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 81 3e-14
tr|B8YLY4|B8YLY4_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 81 3e-14
tr|B8YLY3|B8YLY3_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 81 3e-14
tr|A5AMT8|A5AMT8_VITVI Putative uncharacterized protein OS=Vitis... 74 4e-12
tr|A5AM64|A5AM64_VITVI Putative uncharacterized protein OS=Vitis... 73 6e-12
tr|A7R7G1|A7R7G1_VITVI Chromosome undetermined scaffold_1754, wh... 72 1e-11
tr|A7QG92|A7QG92_VITVI Chromosome undetermined scaffold_91, whol... 72 1e-11
tr|A7NW85|A7NW85_VITVI Chromosome chr5 scaffold_2, whole genome ... 72 1e-11
tr|A5CBM1|A5CBM1_VITVI Putative uncharacterized protein OS=Vitis... 72 1e-11
tr|A5C6L3|A5C6L3_VITVI Putative uncharacterized protein OS=Vitis... 72 1e-11
tr|A5BPZ5|A5BPZ5_VITVI Putative uncharacterized protein OS=Vitis... 72 1e-11
tr|A5BPB3|A5BPB3_VITVI Putative uncharacterized protein OS=Vitis... 72 1e-11
tr|A5BM25|A5BM25_VITVI Putative uncharacterized protein OS=Vitis... 72 1e-11
tr|A5BJQ3|A5BJQ3_VITVI Putative uncharacterized protein OS=Vitis... 72 1e-11
tr|A5BIC7|A5BIC7_VITVI Putative uncharacterized protein OS=Vitis... 72 1e-11
tr|A5BGX3|A5BGX3_VITVI Putative uncharacterized protein OS=Vitis... 72 1e-11
tr|A5BFU1|A5BFU1_VITVI Putative uncharacterized protein OS=Vitis... 72 1e-11
tr|A5BA89|A5BA89_VITVI Putative uncharacterized protein OS=Vitis... 72 1e-11
tr|A5B0V5|A5B0V5_VITVI Putative uncharacterized protein OS=Vitis... 72 1e-11
tr|A5B0C8|A5B0C8_VITVI Putative uncharacterized protein OS=Vitis... 72 1e-11
tr|A5AQN2|A5AQN2_VITVI Putative uncharacterized protein OS=Vitis... 72 1e-11
tr|A5AK46|A5AK46_VITVI Putative uncharacterized protein OS=Vitis... 72 1e-11
tr|A7P0C8|A7P0C8_VITVI Chromosome chr6 scaffold_3, whole genome ... 72 1e-11
tr|A7NUU2|A7NUU2_VITVI Chromosome chr18 scaffold_1, whole genome... 72 1e-11
tr|A5C844|A5C844_VITVI Putative uncharacterized protein OS=Vitis... 72 1e-11
tr|A5BKD2|A5BKD2_VITVI Putative uncharacterized protein OS=Vitis... 72 1e-11
tr|A5AS37|A5AS37_VITVI Putative uncharacterized protein OS=Vitis... 72 1e-11
tr|A5AVU6|A5AVU6_VITVI Putative uncharacterized protein OS=Vitis... 72 2e-11

>tr|B8YLY7|B8YLY7_LOTJA Gag-Pol polyprotein OS=Lotus japonicus PE=4
SV=1
Length = 1305

Score = 83.6 bits (205), Expect = 5e-15
Identities = 46/104 (44%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
Frame = -2

Query: 309 LDSGLRCPSFHVTPHKEWLSTYTTI-HGTVLLENSYGLEICGIRAAKICMRNGTEIMLQN 133
+DSG ++H+TP ++W TY + G V + N + LEI GI KI M +GT LQ
Sbjct: 293 VDSGA---TWHMTPRRDWFCTYEPVSEGNVFMGNDHALEIVGIGTVKIKMYDGTIRTLQE 349

Query: 132 VRHVPKLTKSLLFAGQLDDLGYTTIFAHGSCLIKKGNLVMLKSQ 1
VRHV +L K+LL GQLDDLGY G + KG+LV++K++
Sbjct: 350 VRHVKELAKNLLSVGQLDDLGYKYDIQGGILKVVKGSLVVMKAK 393


>tr|B8YLY6|B8YLY6_MEDTR Gag-Pol polyprotein OS=Medicago truncatula
PE=4 SV=1
Length = 1305

Score = 80.9 bits (198), Expect = 3e-14
Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
Frame = -2

Query: 309 LDSGLRCPSFHVTPHKEWLSTYTTI-HGTVLLENSYGLEICGIRAAKICMRNGTEIMLQN 133
+DSG ++H+TPH++W +Y I G+V + N + LEI G+ ++ M +GT +Q
Sbjct: 293 MDSGA---TWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQG 349

Query: 132 VRHVPKLTKSLLFAGQLDDLGYTTIFAHGSCLIKKGNLVMLKSQ 1
VRHV L K+LL GQLDDLG G + KGNLV++K++
Sbjct: 350 VRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAE 393


>tr|B8YLY5|B8YLY5_MEDTR Gag-Pol polyprotein OS=Medicago truncatula
PE=4 SV=1
Length = 1305

Score = 80.9 bits (198), Expect = 3e-14
Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
Frame = -2

Query: 309 LDSGLRCPSFHVTPHKEWLSTYTTI-HGTVLLENSYGLEICGIRAAKICMRNGTEIMLQN 133
+DSG ++H+TPH++W +Y I G+V + N + LEI G+ ++ M +GT +Q
Sbjct: 293 MDSGA---TWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQG 349

Query: 132 VRHVPKLTKSLLFAGQLDDLGYTTIFAHGSCLIKKGNLVMLKSQ 1
VRHV L K+LL GQLDDLG G + KGNLV++K++
Sbjct: 350 VRHVKGLKKNLLSVGQLDDLGCKIHSESGILKVVKGNLVVMKAE 393


>tr|B8YLY4|B8YLY4_MEDTR Gag-Pol polyprotein OS=Medicago truncatula
PE=4 SV=1
Length = 1305

Score = 80.9 bits (198), Expect = 3e-14
Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
Frame = -2

Query: 309 LDSGLRCPSFHVTPHKEWLSTYTTI-HGTVLLENSYGLEICGIRAAKICMRNGTEIMLQN 133
+DSG ++H+TPH++W +Y I G+V + N + LEI G+ ++ M +GT +Q
Sbjct: 293 MDSGA---TWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQG 349

Query: 132 VRHVPKLTKSLLFAGQLDDLGYTTIFAHGSCLIKKGNLVMLKSQ 1
VRHV L K+LL GQLDDLG G + KGNLV++K++
Sbjct: 350 VRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAE 393


>tr|B8YLY3|B8YLY3_MEDTR Gag-Pol polyprotein OS=Medicago truncatula
PE=4 SV=1
Length = 1305

Score = 80.9 bits (198), Expect = 3e-14
Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
Frame = -2

Query: 309 LDSGLRCPSFHVTPHKEWLSTYTTI-HGTVLLENSYGLEICGIRAAKICMRNGTEIMLQN 133
+DSG ++H+TPH++W +Y I G+V + N + LEI G+ ++ M +GT +Q
Sbjct: 293 MDSGA---TWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQG 349

Query: 132 VRHVPKLTKSLLFAGQLDDLGYTTIFAHGSCLIKKGNLVMLKSQ 1
VRHV L K+LL GQLDDLG G + KGNLV++K++
Sbjct: 350 VRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAE 393


>tr|A5AMT8|A5AMT8_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_005778 PE=4 SV=1
Length = 1024

Score = 73.9 bits (180), Expect = 4e-12
Identities = 38/100 (38%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Frame = -2

Query: 309 LDSGLRCPSFHVTPHKEWLSTYTT-IHGTVLLENSYGLEICGIRAAKICMRNGTEIMLQN 133
LDSG SFH TPH+E + Y G V L + L++ G+ +I + NG+ +L+
Sbjct: 205 LDSGA---SFHTTPHREIIQNYVVGDFGKVYLADGSALDVVGLGDVRISLPNGSIWLLEK 261

Query: 132 VRHVPKLTKSLLFAGQLDDLGYTTIFAHGSCLIKKGNLVM 13
VRH+P L ++L++ GQLDD G+ +F G+ + KG V+
Sbjct: 262 VRHIPDLRRNLIYVGQLDDEGHVILFVGGTWKVTKGTRVL 301


>tr|A5AM64|A5AM64_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_037436 PE=4 SV=1
Length = 1183

Score = 73.2 bits (178), Expect = 6e-12
Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Frame = -2

Query: 309 LDSGLRCPSFHVTPHKEWLSTYTT-IHGTVLLENSYGLEICGIRAAKICMRNGTEIMLQN 133
LDSG SFH TPH+E + Y G V L + L++ G+ +I + NG+ +L+
Sbjct: 251 LDSGA---SFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVCLLEK 307

Query: 132 VRHVPKLTKSLLFAGQLDDLGYTTIFAHGSCLIKKGNLVMLKSQ 1
VRH+P L ++L+ GQLDD G+ +F G+ + KG V+ + +
Sbjct: 308 VRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGK 351


>tr|A7R7G1|A7R7G1_VITVI Chromosome undetermined scaffold_1754, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00009987001 PE=4 SV=1
Length = 466

Score = 72.4 bits (176), Expect = 1e-11
Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Frame = -2

Query: 309 LDSGLRCPSFHVTPHKEWLSTYTT-IHGTVLLENSYGLEICGIRAAKICMRNGTEIMLQN 133
LDSG SFH TPH+E + Y G V L + L++ G+ +I + NG+ +L+
Sbjct: 228 LDSGA---SFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEK 284

Query: 132 VRHVPKLTKSLLFAGQLDDLGYTTIFAHGSCLIKKGNLVMLKSQ 1
VRH+P L ++L+ GQLDD G+ +F G+ + KG V+ + +
Sbjct: 285 VRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGK 328


>tr|A7QG92|A7QG92_VITVI Chromosome undetermined scaffold_91, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00037749001 PE=4 SV=1
Length = 788

Score = 72.4 bits (176), Expect = 1e-11
Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Frame = -2

Query: 309 LDSGLRCPSFHVTPHKEWLSTYTT-IHGTVLLENSYGLEICGIRAAKICMRNGTEIMLQN 133
LDSG SFH TPH+E + Y G V L + L++ G+ +I + NG+ +L+
Sbjct: 571 LDSGA---SFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEK 627

Query: 132 VRHVPKLTKSLLFAGQLDDLGYTTIFAHGSCLIKKGNLVMLKSQ 1
VRH+P L ++L+ GQLDD G+ +F G+ + KG V+ + +
Sbjct: 628 VRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGK 671


>tr|A7NW85|A7NW85_VITVI Chromosome chr5 scaffold_2, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00019821001
PE=4 SV=1
Length = 617

Score = 72.4 bits (176), Expect = 1e-11
Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 1/104 (0%)
Frame = -2

Query: 309 LDSGLRCPSFHVTPHKEWLSTYTT-IHGTVLLENSYGLEICGIRAAKICMRNGTEIMLQN 133
LDSG SFH TPH+E + Y G V L + L++ G+ +I + NG+ +L+
Sbjct: 224 LDSGA---SFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEK 280

Query: 132 VRHVPKLTKSLLFAGQLDDLGYTTIFAHGSCLIKKGNLVMLKSQ 1
VRH+P L ++L+ GQLDD G+ +F G+ + KG V+ + +
Sbjct: 281 VRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGK 324