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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP920628
Clone id YMU001_000139_E01
Library
Length 586
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000139_E01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTCACAAGTAGCATAATATTGATAAATTGGCAATCTCACAAGACCAACACGACACAAAG
TTCACCTCTTACTCATCAAAGCATTCAAAAGGGTTTTGAGGAAACAAGCCTCGATACAAG
ACATACCAACATAGATTAACCTTTGACACAAAAAGCACCATGCTTAGTAGGTATCCTAGC
GGTTTGACGCGACTCTCTTTGAATGTTGGAATCTTCGAGATGCGATGGTTTTGTCGTACA
AGTCCTTGAACGCATCTATGGTTGTCTTCATCTTGTCAAATATCTGGCAATCATTCTCCA
CCAAGTCGATGATCGTAAATTGATCTCCATCTCCCATCATCATTACATGCATCCCGTGAA
AAAGAGACGAGCGTAAGCAGTCTGAATAAAACCTGAAAACTTTACTATCCCTATCGTGCT
TGTGATAATCACTCGAACCCACTATACAAAAGAAAATAGGCTTGTTGTGAACTTCTGTCG
CCGATTCGTTCAACACAAGCCGCGAAGTAGGGTTCTCCCTCACCCACTTCTTAGTTATAC
AAATGTAAACAGTAAACATTTTTTCCTCTCTTCGCATCCTATGCGG
■■Homology search results ■■ -
sp_hit_id Q01227
Definition sp|Q01227|VB05_VACCW Plaque-size/host range protein OS=Vaccinia virus (strain Western Reserve)
Align length 32
Score (bit) 30.4
E-value 6.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920628|Adiantum capillus-veneris mRNA, clone:
YMU001_000139_E01.
         (586 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q01227|VB05_VACCW Plaque-size/host range protein OS=Vaccinia ...    30   6.8  
sp|Q9JF44|VB05_VACCT Plaque-size/host range protein OS=Vaccinia ...    30   6.8  
sp|P21115|VB05_VACCC Plaque-size/host range protein OS=Vaccinia ...    30   6.8  
sp|O57254|VB05_VACCA Plaque-size/host range protein OS=Vaccinia ...    30   6.8  
sp|P34740|SDC1_MESAU Syndecan-1 OS=Mesocricetus auratus GN=SDC1 ...    30   6.8  

>sp|Q01227|VB05_VACCW Plaque-size/host range protein OS=Vaccinia
           virus (strain Western Reserve) GN=PS/HR PE=3 SV=1
          Length = 317

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -1

Query: 544 ICITKKWVRENPTSRL-VLNESATEVHNKPIF 452
           +C T KW  ENP  ++  +++  +E++NKP++
Sbjct: 60  VCETDKWKYENPCKKMCTVSDYISELYNKPLY 91


>sp|Q9JF44|VB05_VACCT Plaque-size/host range protein OS=Vaccinia
           virus (strain Tian Tan) GN=PS/HR PE=3 SV=1
          Length = 317

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -1

Query: 544 ICITKKWVRENPTSRL-VLNESATEVHNKPIF 452
           +C T KW  ENP  ++  +++  +E++NKP++
Sbjct: 60  VCETDKWKYENPCKKMCTVSDYISELYNKPLY 91


>sp|P21115|VB05_VACCC Plaque-size/host range protein OS=Vaccinia
           virus (strain Copenhagen) GN=PS/HR PE=3 SV=1
          Length = 317

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -1

Query: 544 ICITKKWVRENPTSRL-VLNESATEVHNKPIF 452
           +C T KW  ENP  ++  +++  +E++NKP++
Sbjct: 60  VCETDKWKYENPCKKMCTVSDYISELYNKPLY 91


>sp|O57254|VB05_VACCA Plaque-size/host range protein OS=Vaccinia
           virus (strain Ankara) GN=PS/HR PE=3 SV=1
          Length = 317

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -1

Query: 544 ICITKKWVRENPTSRL-VLNESATEVHNKPIF 452
           +C T KW  ENP  ++  +++  +E++NKP++
Sbjct: 60  VCETDKWKYENPCKKMCTVSDYISELYNKPLY 91


>sp|P34740|SDC1_MESAU Syndecan-1 OS=Mesocricetus auratus GN=SDC1
           PE=2 SV=1
          Length = 309

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +2

Query: 5   TSSIILINWQSHKTNTTQSSPLT---HQSIQKGFEETSLDT 118
           T+ +++ +W S    TT  +P+T   H+ +Q G  ETS  T
Sbjct: 130 TTQLLITHWVSTARATTAQAPVTSHPHRDVQPGLHETSAPT 170
tr_hit_id A0CK54
Definition tr|A0CK54|A0CK54_PARTE Chromosome undetermined scaffold_2, whole genome shotgun sequence OS=Paramecium tetraurelia
Align length 61
Score (bit) 35.0
E-value 3.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP920628|Adiantum capillus-veneris mRNA, clone:
YMU001_000139_E01.
         (586 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0CK54|A0CK54_PARTE Chromosome undetermined scaffold_2, whole...    35   3.1  
tr|B3L8A5|B3L8A5_PLAKH Putative uncharacterized protein OS=Plasm...    35   4.1  
tr|Q0V3K7|Q0V3K7_PHANO Putative uncharacterized protein OS=Phaeo...    34   5.2  
tr|A0CN92|A0CN92_PARTE Chromosome undetermined scaffold_22, whol...    34   6.9  
tr|A0CLB2|A0CLB2_PARTE Chromosome undetermined scaffold_20, whol...    33   9.0  

>tr|A0CK54|A0CK54_PARTE Chromosome undetermined scaffold_2, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00000884001 PE=4 SV=1
          Length = 464

 Score = 35.0 bits (79), Expect = 3.1
 Identities = 20/61 (32%), Positives = 35/61 (57%)
 Frame = -3

Query: 368 VSFSRDACNDDGRWRSIYDHRLGGE*LPDI*QDEDNHRCVQGLVRQNHRISKIPTFKESR 189
           ++F  D C++  RWR+I   R+  E L +I ++E+        ++QN  + KI  FKE+R
Sbjct: 217 LTFKEDQCDERERWRNIVQKRITQEQLQEIMREEE--------LKQNKELVKI--FKETR 266

Query: 188 V 186
           +
Sbjct: 267 I 267


>tr|B3L8A5|B3L8A5_PLAKH Putative uncharacterized protein
           OS=Plasmodium knowlesi (strain H) GN=PKH_120510 PE=4
           SV=1
          Length = 1674

 Score = 34.7 bits (78), Expect = 4.1
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 15/67 (22%)
 Frame = +2

Query: 419 LVIITRTHYTKENRL------VVNF-----CRRFVQHKPRSRVLPHPLLSYTNVN----S 553
           LV +T  HY KENR+      + NF     CR F++ KP+ + +     S   +     S
Sbjct: 213 LVALTAVHYAKENRINSITSKMNNFKENYICRNFIRKKPKGKAMFAKYESRKTIEIKKYS 272

Query: 554 KHFFLSS 574
           K+FFL S
Sbjct: 273 KYFFLKS 279


>tr|Q0V3K7|Q0V3K7_PHANO Putative uncharacterized protein
           OS=Phaeosphaeria nodorum GN=SNOG_01407 PE=4 SV=1
          Length = 447

 Score = 34.3 bits (77), Expect = 5.2
 Identities = 24/84 (28%), Positives = 40/84 (47%)
 Frame = -3

Query: 266 DNHRCVQGLVRQNHRISKIPTFKESRVKPLGYLLSMVLFVSKVNLCWYVLYRGLFPQNPF 87
           DN   V+GLV      S   T  ++  +P GYL + +L      + W   +  L P++PF
Sbjct: 240 DNRLIVRGLVEGGSYTSARLTTNQTLQRPRGYLTATILAPVAEGI-WPAYW--LLPKDPF 296

Query: 86  ECFDE*EVNFVSCWSCEIANLSIL 15
           +  ++ EV+    W+ +  N S L
Sbjct: 297 QWPNDGEVDIFESWNGDCVNHSCL 320


>tr|A0CN92|A0CN92_PARTE Chromosome undetermined scaffold_22, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00008700001 PE=4 SV=1
          Length = 466

 Score = 33.9 bits (76), Expect = 6.9
 Identities = 20/61 (32%), Positives = 35/61 (57%)
 Frame = -3

Query: 368 VSFSRDACNDDGRWRSIYDHRLGGE*LPDI*QDEDNHRCVQGLVRQNHRISKIPTFKESR 189
           ++F  D C++  RWR+I   R+  E L +I ++E+        ++QN  + KI  FKE+R
Sbjct: 219 LTFKEDQCDEMERWRNIVQKRITQEQLLEIMREEE--------LKQNKELVKI--FKETR 268

Query: 188 V 186
           +
Sbjct: 269 I 269


>tr|A0CLB2|A0CLB2_PARTE Chromosome undetermined scaffold_20, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00008126001 PE=4 SV=1
          Length = 469

 Score = 33.5 bits (75), Expect = 9.0
 Identities = 19/61 (31%), Positives = 34/61 (55%)
 Frame = -3

Query: 368 VSFSRDACNDDGRWRSIYDHRLGGE*LPDI*QDEDNHRCVQGLVRQNHRISKIPTFKESR 189
           + F  DAC++  RWR+I   R+  E +  I  DE+        ++QN ++ +I  FK++R
Sbjct: 228 IKFKEDACDEVERWRNIVQKRITQEQMQKILADEE--------MKQNKQLVQI--FKDTR 277

Query: 188 V 186
           +
Sbjct: 278 I 278